Rw1G035940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000127
Physical Location & Seq
Forward (+)
63750955 .. 63751470
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035940.1

Sequence Viewer

Length: 516 bp
ATGAAGAGAAAAACTGGGAAGGCCCAAAGACACAATTTTCAGAGCTTTGATAGTTACACTGTTGTGGAGGGCTTTGCACAATTTAAAGACATCCCTAGCCATACATCCGGAGGAACATCAAATGAAGGAAATCAACATATGCGCACACAACCAATTCCTGGAAATTCTCCCATCAACTTGGACATGGATGTAGATGAGGTAATTGCAAGTGAAACTGCATATCCTAATATGAGGCCTCAAGGAATGAAGGTTGCAAAAGAAGCAATACGGAAAGGAAAGAATGCAGCGAAATATCAAAGTCCTTTGTCAAGCACTCTCGAGAGTATAGCGAACAACCAGATAAAGGCAACCGCGGGCAAGAAAAAACTCGATGACGAATTCGCTCGAAGTCTCCAAGAGGAAGAGAAAAGAGCATGTATCCTCTTGCAAATCGAAATGCGAAAAGAGAAACTCCTATTTCAAGAAAGGCAAGATCGAATTAAAGAGAGGGAAGAGCGAAATAAAGAGAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.57

Weight (kDa)

9.28

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 158
AccII CGCG 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 2 cut(s) 351, 353
AcsI RAATTY 2 cut(s) 163, 377
AfiI CCNNNNNNNGG 2 cut(s) 158, 343
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 1 cut(s) 157
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 2 cut(s) 21, 233
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 163, 377
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 317
BbvI GCAGC 1 cut(s) 296
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 96
BfuI GTATCC 1 cut(s) 428
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 343
Bse1I ACTGG 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 3 cut(s) 90, 104, 193
BseLI CCNNNNNNNGG 2 cut(s) 158, 343
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 2 cut(s) 23, 235
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 158, 343
BsmAI GTCTC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 2 cut(s) 23, 235
BsoBI CYCGRG 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 2 cut(s) 351, 353
BspANI GGCC 2 cut(s) 23, 235
BspEI TCCGGA 1 cut(s) 107
BspFNI CGCG 1 cut(s) 353
BspQI GCTCTTC 1 cut(s) 486
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 396, 486
BstC8I GCNNGC 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 90, 104, 193
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 178
BsuI GTATCC 1 cut(s) 428
BsuRI GGCC 2 cut(s) 23, 235
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 90, 104, 193
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 22
Cfr42I CCGCGG 1 cut(s) 354
CviAII CATG 2 cut(s) 184, 414
CviJI RGCY 5 cut(s) 23, 45, 72, 99, 235
CviKI_1 RGCY 5 cut(s) 23, 45, 72, 99, 235
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 396, 486
EarI CTCTTC 2 cut(s) 396, 486
Eco147I AGGCCT 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 187, 417
FaiI YATR 8 cut(s) 102, 138, 140, 185, 220, 230, 326, 415
FatI CATG 2 cut(s) 183, 413
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 3 cut(s) 77, 91, 200
Fsp4HI GCNGC 1 cut(s) 285
FspAI RTGCGCAY 1 cut(s) 143
FspBI CTAG 1 cut(s) 96
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 23, 235
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 144
Hin1II CATG 2 cut(s) 187, 417
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HpaII CCGG 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 4 cut(s) 108, 317, 319, 461
HpyAV CCTTC 3 cut(s) 13, 119, 241
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 6 cut(s) 77, 206, 218, 254, 284, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
Hsp92II CATG 2 cut(s) 187, 417
HspAI GCGC 1 cut(s) 142
Kpn2I TCCGGA 1 cut(s) 107
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 1 cut(s) 472
LguI GCTCTTC 1 cut(s) 486
LpnPI CCDG 4 cut(s) 121, 144, 171, 350
Lsp1109I GCAGC 1 cut(s) 296
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 3 cut(s) 16, 413, 503
MluCI AATT 7 cut(s) 34, 80, 153, 163, 201, 377, 477
MnlI CCTC 9 cut(s) 61, 104, 190, 225, 246, 391, 431, 480, 501
MroI TCCGGA 1 cut(s) 107
MseI TTAA 2 cut(s) 84, 480
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeI CATATG 1 cut(s) 138
NdeII GATC 1 cut(s) 472
NlaIII CATG 2 cut(s) 187, 417
NsbI TGCGCA 1 cut(s) 143
NspI RCATGY 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 317
PceI AGGCCT 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspPI GGNCC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 62
SacII CCGCGG 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 84, 480
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 159
SetI ASST 3 cut(s) 47, 201, 252
Sfr274I CTCGAG 1 cut(s) 317
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 237, 317
SmoI CTYRAG 2 cut(s) 237, 317
Sse9I AATT 7 cut(s) 34, 80, 153, 163, 201, 377, 477
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 2 cut(s) 351, 353
SspMI CTAG 1 cut(s) 96
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 5 cut(s) 318, 369, 385, 432, 475
TasI AATT 7 cut(s) 34, 80, 153, 163, 201, 377, 477
Tru1I TTAA 2 cut(s) 84, 480
Tru9I TTAA 2 cut(s) 84, 480
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 17, 138, 260
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 158
XapI RAATTY 2 cut(s) 163, 377
XceI RCATGY 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.