Rroxscaffold_6G00391720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000127
Physical Location & Seq
Forward (+)
10423134 .. 10423875
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391720.1

Sequence Viewer

Length: 711 bp
ATGCATACACAACAAGCCGCTCCTGATTCTCAAGTCCAGTTGGACATAGATGCAGATGAGGTAAACGCCGATGCAACTCCCAATCCTTCGGTGAGGCCTCAAGGAAAGAAGGCTGCCAAAGAAGCTCTTCGAAAAGGAAACCGCTGTGGAGACTATAGCATCCAACCAAATATCAATGATGTCGCCAAGGAGAAACGTGATGTGGAATATGCTCGACATCTCCGTGACCAACAACAACGAGATTATATACGCTTGCAAATGGATATGCGAAACGAGGCATTCAAAATTCAAGAGAGGGAAGAGCGTATTATGGAGCTCGACACAAGTAAGATGACGCCAACCAAAAAGAATTACTGGCAAAGAAAACAAAAAAAAATTGCAGAGAAAGAAGCTGAAGATGCAACCCGTGGATCTAACATCCCACAACCACCATTCCCCGGTAGGTATTATCCACAATCTCCTTTCTCCGGTGGCTATCCACAACCTTCTTTCCCCGGTGGCTATCCACAACCTCCTTTCCTCGGTGGCTATCCACAACCACCATTCCCCGGTGGGTATTATCCACAATCTCCTTTCCCCGGTGGCTTCCCACAACCACCATTCACCGGTGGTGTCCCTTCCCCACCTTTCTCTTCGGGTGAATCCACCAACCCCAACCATATGGATGACCCCACAAACACAAATTGGATTCTTAATGAAGATGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.65

Weight (kDa)

5.52

Isoelectric Point (pI)

70.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 7 - 126 2.4e-09 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 2 cut(s) 18, 142
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 437, 467, 521, 548, 578, 605
AgeI ACCGGT 1 cut(s) 605
AgsI TTSAA 2 cut(s) 283, 290
AluBI AGCT 3 cut(s) 125, 316, 392
AluI AGCT 3 cut(s) 125, 316, 392
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 418
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 285
AsiGI ACCGGT 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 126
AsuC2I CCSGG 4 cut(s) 438, 495, 549, 579
AsuHPI GGTGA 3 cut(s) 103, 595, 650
AsuII TTCGAA 1 cut(s) 130
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 100
BcnI CCSGG 4 cut(s) 438, 495, 549, 579
BcoDI GTCTC 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 2 cut(s) 18, 114
BlsI GCNGC 2 cut(s) 19, 115
Bme1390I CCNGG 4 cut(s) 438, 495, 549, 579
BmrFI CCNGG 4 cut(s) 438, 495, 549, 579
BmsI GCATC 4 cut(s) 40, 61, 168, 388
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 2 cut(s) 15, 84
BpuMI CCSGG 4 cut(s) 438, 495, 549, 579
BsaHI GRCGYC 1 cut(s) 335
BsaJI CCNNGG 7 cut(s) 186, 406, 436, 493, 520, 547, 577
BsaWI WCCGGW 2 cut(s) 467, 605
Bsc4I CCNNNNNNNGG 6 cut(s) 437, 467, 521, 548, 578, 605
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 2 cut(s) 37, 359
BseDI CCNNGG 7 cut(s) 186, 406, 436, 493, 520, 547, 577
BseGI GGATG 3 cut(s) 159, 417, 670
BseLI CCNNNNNNNGG 6 cut(s) 437, 467, 521, 548, 578, 605
BseNI ACTGG 2 cut(s) 37, 359
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 6 cut(s) 438, 468, 495, 549, 579, 606
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 6 cut(s) 437, 467, 521, 548, 578, 605
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 410
BspACI CCGC 2 cut(s) 18, 142
BspANI GGCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 2 cut(s) 132, 294
BspT104I TTCGAA 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 2 cut(s) 37, 359
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 7 cut(s) 186, 406, 436, 493, 520, 547, 577
BssMI GATC 1 cut(s) 410
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 186
Bst6I CTCTTC 3 cut(s) 132, 294, 637
BstACI GRCGYC 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 3 cut(s) 159, 417, 670
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 122, 398
BstSCI CCNGG 4 cut(s) 436, 493, 547, 577
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 3 cut(s) 159, 417, 670
Cac8I GCNNGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 605
CseI GACGC 1 cut(s) 343
CspAI ACCGGT 1 cut(s) 605
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eam1104I CTCTTC 3 cut(s) 132, 294, 637
EarI CTCTTC 3 cut(s) 132, 294, 637
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 186
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 599
FauNDI CATATG 1 cut(s) 660
Fnu4HI GCNGC 2 cut(s) 18, 114
FokI GGATG 3 cut(s) 146, 404, 677
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 18, 114
GluI GCNGC 2 cut(s) 18, 114
HaeIII GGCC 1 cut(s) 97
HapII CCGG 6 cut(s) 438, 468, 495, 549, 579, 606
HgaI GACGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 335
HinfI GANTC 3 cut(s) 26, 641, 688
HpaII CCGG 6 cut(s) 438, 468, 495, 549, 579, 606
HphI GGTGA 3 cut(s) 103, 595, 650
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 23, 290
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 96, 103, 495, 627
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 6 cut(s) 4, 53, 74, 256, 380, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 398
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 410
LguI GCTCTTC 2 cut(s) 132, 294
LmnI GCTCC 2 cut(s) 25, 313
LpnPI CCDG 9 cut(s) 36, 50, 340, 451, 481, 508, 562, 592, 619
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 4 cut(s) 40, 61, 168, 388
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 412
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 410
MboII GAAGA 5 cut(s) 119, 311, 407, 624, 710
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 4 cut(s) 285, 349, 375, 682
MmeI TCCRAC 2 cut(s) 21, 187
MnlI CCTC 8 cut(s) 52, 87, 108, 268, 288, 522, 530, 697
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 2 cut(s) 222, 663
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 6 cut(s) 438, 468, 495, 549, 579, 606
MspR9I CCNGG 4 cut(s) 438, 495, 549, 579
Mva1269I GAATGC 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 122, 398
NciI CCSGG 4 cut(s) 438, 495, 549, 579
NdeI CATATG 1 cut(s) 660
NdeII GATC 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 130
PceI AGGCCT 1 cut(s) 97
PciSI GCTCTTC 2 cut(s) 132, 294
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 26, 641, 688
PinAI ACCGGT 1 cut(s) 605
PkrI GCNGC 2 cut(s) 19, 115
Psp124BI GAGCTC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 410
RseI CAYNNNNRTG 2 cut(s) 222, 663
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 2 cut(s) 132, 294
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 2 cut(s) 18, 114
Sau3AI GATC 1 cut(s) 410
ScrFI CCNGG 4 cut(s) 438, 495, 549, 579
SduI GDGCHC 1 cut(s) 318
SetI ASST 9 cut(s) 63, 127, 199, 318, 394, 446, 487, 514, 628
SfaNI GCATC 4 cut(s) 40, 61, 168, 388
SfcI CTRYAG 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 130
SgrAI CRCCGGYG 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 222, 663
SmlI CTYRAG 2 cut(s) 30, 99
SmoI CTYRAG 2 cut(s) 30, 99
Sse9I AATT 4 cut(s) 285, 349, 375, 682
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 18, 142
SstI GAGCTC 1 cut(s) 318
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 4 cut(s) 436, 493, 547, 577
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 199
TaqI TCGA 3 cut(s) 130, 214, 318
TasI AATT 4 cut(s) 285, 349, 375, 682
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 3 cut(s) 26, 641, 688
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 711
TspGWI ACGGA 1 cut(s) 212
XapI RAATTY 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.