Rroxscaffold_2G00143500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000127
Physical Location & Seq
Reverse (-)
81506197 .. 81506860
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143500.1

Sequence Viewer

Length: 378 bp
ATGACCAAATCGAAAGGAAAACAAAAAAAAGGAGATTTCATTAGTTTAGAATGTTACGAGATTGTTAAGGGGTTTCAACAATTTGATGACATTCCAAATCATTCCTCTTCGGCTGGAGGAACCTCTAGGGGAGGAACTGAACGGATGCACACACAACAATCCGCTCCCGATTCTCATGTCCAGTTGGAGATAGATGCGGATGAGGTAAACGCCGATGCAACTCCCAATCCTTCGGTGAGGCCTCAAGGAAAGAAGGCTGCCAAAGAAGCTCTTCGGAAAGGAAAGAAAGCATCTAATGATTCCAGCCCTCTCGACAGCCGCTGTGGAGACTATAGCAACCAACCAAACATCAATGATGTCTGCCAAGGAGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.5

Weight (kDa)

6.28

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 3 cut(s) 162, 197, 319
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 321
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 247
BbvI GCAGC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 331
BisI GCNGC 2 cut(s) 258, 319
BlsI GCNGC 2 cut(s) 259, 320
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 4 cut(s) 135, 184, 205, 299
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 150, 205
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 241
BspACI CCGC 3 cut(s) 162, 197, 319
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 112, 276
BstF5I GGATG 2 cut(s) 150, 205
BstMAI GTCTC 1 cut(s) 321
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 150, 205
CaiI CAGNNNCTG 1 cut(s) 321
CviAII CATG 1 cut(s) 176
CviJI RGCY 6 cut(s) 113, 241, 257, 269, 306, 318
CviKI_1 RGCY 6 cut(s) 113, 241, 257, 269, 306, 318
Eam1104I CTCTTC 2 cut(s) 112, 276
EarI CTCTTC 2 cut(s) 112, 276
Eco130I CCWWGG 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 1 cut(s) 179
FaiI YATR 2 cut(s) 177, 333
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 258, 319
FokI GGATG 2 cut(s) 157, 212
Fsp4HI GCNGC 2 cut(s) 258, 319
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 258, 319
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 1 cut(s) 179
HinfI GANTC 2 cut(s) 170, 299
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 2 cut(s) 167, 311
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 240, 247
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 148, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 1 cut(s) 179
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 99, 194, 316
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 4 cut(s) 135, 184, 205, 299
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 164
MboII GAAGA 2 cut(s) 99, 263
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 8 cut(s) 110, 115, 125, 133, 196, 231, 252, 318
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 121
PceI AGGCCT 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 170, 299
PkrI GCNGC 2 cut(s) 259, 320
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 258, 319
SetI ASST 4 cut(s) 125, 207, 271, 377
SfaNI GCATC 4 cut(s) 135, 184, 205, 299
SfcI CTRYAG 1 cut(s) 331
SgeI CNNG 9 cut(s) 70, 126, 138, 179, 188, 193, 257, 315, 323
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 3 cut(s) 162, 197, 319
SspMI CTAG 1 cut(s) 126
StuI AGGCCT 1 cut(s) 241
StyI CCWWGG 1 cut(s) 364
TaiI ACGT 1 cut(s) 377
TaqI TCGA 2 cut(s) 11, 312
TasI AATT 1 cut(s) 80
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 2 cut(s) 170, 299
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.