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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 574 |
| AccBSI | CCGCTC | 1 cut(s) | 204 |
| AccII | CGCG | 1 cut(s) | 704 |
| AciI | CCGC | 5 cut(s) | 204, 215, 314, 702, 704 |
| AclWI | GGATC | 1 cut(s) | 566 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 4 cut(s) | 138, 237, 514, 728 |
| AfaI | GTAC | 2 cut(s) | 197, 296 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 12, 35, 694 |
| AflIII | ACRYGT | 1 cut(s) | 23 |
| AgsI | TTSAA | 6 cut(s) | 104, 145, 152, 244, 251, 309 |
| AjiI | CACGTC | 1 cut(s) | 26 |
| AluBI | AGCT | 1 cut(s) | 638 |
| AluI | AGCT | 1 cut(s) | 638 |
| Alw26I | GTCTC | 2 cut(s) | 671, 746 |
| AlwI | GGATC | 1 cut(s) | 566 |
| Ama87I | CYCGRG | 1 cut(s) | 668 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 3 cut(s) | 557, 602, 635 |
| ApoI | RAATTY | 4 cut(s) | 138, 237, 514, 728 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 99 |
| AsuC2I | CCSGG | 1 cut(s) | 36 |
| AsuII | TTCGAA | 1 cut(s) | 209 |
| AvaI | CYCGRG | 1 cut(s) | 668 |
| BaeGI | GKGCMC | 1 cut(s) | 36 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 472, 504 |
| BbsI | GAAGAC | 1 cut(s) | 377 |
| BbvI | GCAGC | 3 cut(s) | 569, 589, 647 |
| BccI | CCATC | 2 cut(s) | 75, 413 |
| BciVI | GTATCC | 1 cut(s) | 779 |
| BcnI | CCSGG | 1 cut(s) | 36 |
| BcoDI | GTCTC | 2 cut(s) | 671, 746 |
| BfaI | CTAG | 1 cut(s) | 447 |
| BfmI | CTRYAG | 1 cut(s) | 567 |
| BfuAI | ACCTGC | 1 cut(s) | 574 |
| BfuI | GTATCC | 1 cut(s) | 779 |
| BisI | GCNGC | 3 cut(s) | 558, 603, 636 |
| BlsI | GCNGC | 3 cut(s) | 559, 604, 637 |
| Bme1390I | CCNGG | 1 cut(s) | 36 |
| BmeT110I | CYCGRG | 1 cut(s) | 668 |
| BmgBI | CACGTC | 1 cut(s) | 26 |
| BmrFI | CCNGG | 1 cut(s) | 36 |
| BmsI | GCATC | 1 cut(s) | 595 |
| BpiI | GAAGAC | 1 cut(s) | 377 |
| Bpu14I | TTCGAA | 1 cut(s) | 209 |
| BpuMI | CCSGG | 1 cut(s) | 36 |
| Bsa29I | ATCGAT | 1 cut(s) | 720 |
| BsaJI | CCNNGG | 1 cut(s) | 702 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 12, 35, 694 |
| Bse1I | ACTGG | 1 cut(s) | 29 |
| BseCI | ATCGAT | 1 cut(s) | 720 |
| BseDI | CCNNGG | 1 cut(s) | 702 |
| BseGI | GGATG | 5 cut(s) | 331, 360, 424, 441, 455 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 12, 35, 694 |
| BseNI | ACTGG | 1 cut(s) | 29 |
| BseSI | GKGCMC | 1 cut(s) | 36 |
| BseXI | GCAGC | 3 cut(s) | 569, 589, 647 |
| Bsh1236I | CGCG | 1 cut(s) | 704 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshVI | ATCGAT | 1 cut(s) | 720 |
| BsiHKCI | CYCGRG | 1 cut(s) | 668 |
| BsiSI | CCGG | 1 cut(s) | 36 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 12, 35, 694 |
| BsmAI | GTCTC | 2 cut(s) | 671, 746 |
| BsmI | GAATGC | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 5 |
| BsoBI | CYCGRG | 1 cut(s) | 668 |
| Bsp119I | TTCGAA | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 1 cut(s) | 36 |
| Bsp143I | GATC | 3 cut(s) | 49, 571, 643 |
| BspACI | CCGC | 5 cut(s) | 204, 215, 314, 702, 704 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspDI | ATCGAT | 1 cut(s) | 720 |
| BspFNI | CGCG | 1 cut(s) | 704 |
| BspMAI | CTGCAG | 1 cut(s) | 571 |
| BspMI | ACCTGC | 1 cut(s) | 574 |
| BspPI | GGATC | 1 cut(s) | 566 |
| BspT104I | TTCGAA | 1 cut(s) | 209 |
| BsrBI | CCGCTC | 1 cut(s) | 204 |
| BsrI | ACTGG | 1 cut(s) | 29 |
| BssECI | CCNNGG | 1 cut(s) | 702 |
| BssMI | GATC | 3 cut(s) | 49, 571, 643 |
| Bst6I | CTCTTC | 1 cut(s) | 747 |
| BstBI | TTCGAA | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 2 cut(s) | 282, 706 |
| BstDSI | CCRYGG | 1 cut(s) | 702 |
| BstF5I | GGATG | 5 cut(s) | 331, 360, 424, 441, 455 |
| BstFNI | CGCG | 1 cut(s) | 704 |
| BstKTI | GATC | 3 cut(s) | 52, 574, 646 |
| BstMAI | GTCTC | 2 cut(s) | 671, 746 |
| BstMBI | GATC | 3 cut(s) | 49, 571, 643 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 566, 611 |
| BstNSI | RCATGY | 1 cut(s) | 768 |
| BstSCI | CCNGG | 1 cut(s) | 34 |
| BstSFI | CTRYAG | 1 cut(s) | 567 |
| BstSLI | GKGCMC | 1 cut(s) | 36 |
| BstUI | CGCG | 1 cut(s) | 704 |
| BstV1I | GCAGC | 3 cut(s) | 569, 589, 647 |
| BstV2I | GAAGAC | 1 cut(s) | 377 |
| BstX2I | RGATCY | 1 cut(s) | 571 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 529 |
| BstYI | RGATCY | 1 cut(s) | 571 |
| Bsu15I | ATCGAT | 1 cut(s) | 720 |
| BsuI | GTATCC | 1 cut(s) | 779 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BsuTUI | ATCGAT | 1 cut(s) | 720 |
| BtgI | CCRYGG | 1 cut(s) | 702 |
| BtrI | CACGTC | 1 cut(s) | 26 |
| BtsCI | GGATG | 5 cut(s) | 331, 360, 424, 441, 455 |
| BtsIMutI | CAGTG | 1 cut(s) | 36 |
| BveI | ACCTGC | 1 cut(s) | 574 |
| Cac8I | GCNNGC | 2 cut(s) | 282, 706 |
| Cfr42I | CCGCGG | 1 cut(s) | 705 |
| ClaI | ATCGAT | 1 cut(s) | 720 |
| Csp6I | GTAC | 2 cut(s) | 196, 295 |
| CviAII | CATG | 2 cut(s) | 535, 765 |
| CviJI | RGCY | 6 cut(s) | 5, 423, 450, 560, 602, 638 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 423, 450, 560, 602, 638 |
| CviQI | GTAC | 2 cut(s) | 196, 295 |
| DpnI | GATC | 3 cut(s) | 51, 573, 645 |
| DpnII | GATC | 3 cut(s) | 49, 571, 643 |
| DraI | TTTAAA | 1 cut(s) | 436 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 747 |
| EarI | CTCTTC | 1 cut(s) | 747 |
| Eco88I | CYCGRG | 1 cut(s) | 668 |
| FaeI | CATG | 2 cut(s) | 538, 768 |
| FaiI | YATR | 7 cut(s) | 343, 348, 453, 489, 536, 677, 766 |
| FatI | CATG | 2 cut(s) | 534, 764 |
| FauI | CCCGC | 1 cut(s) | 697 |
| Fnu4HI | GCNGC | 3 cut(s) | 558, 603, 636 |
| FokI | GGATG | 5 cut(s) | 338, 367, 428, 431, 442 |
| Fsp4HI | GCNGC | 3 cut(s) | 558, 603, 636 |
| FspBI | CTAG | 1 cut(s) | 447 |
| GluI | GCNGC | 3 cut(s) | 558, 603, 636 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 36 |
| Hin1II | CATG | 2 cut(s) | 538, 768 |
| HincII | GTYRAC | 1 cut(s) | 485 |
| HindII | GTYRAC | 1 cut(s) | 485 |
| HpaII | CCGG | 1 cut(s) | 36 |
| Hpy166II | GTNNAC | 1 cut(s) | 485 |
| Hpy188I | TCNGA | 2 cut(s) | 393, 460 |
| Hpy188III | TCNNGA | 2 cut(s) | 668, 670 |
| Hpy8I | GTNNAC | 1 cut(s) | 485 |
| HpyAV | CCTTC | 6 cut(s) | 123, 139, 238, 455, 588, 592 |
| HpyCH4IV | ACGT | 1 cut(s) | 25 |
| HpyCH4V | TGCA | 8 cut(s) | 111, 173, 272, 428, 557, 569, 605, 778 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 566, 611 |
| HpySE526I | ACGT | 1 cut(s) | 25 |
| Hsp92II | CATG | 2 cut(s) | 538, 768 |
| KspI | CCGCGG | 1 cut(s) | 705 |
| Kzo9I | GATC | 3 cut(s) | 49, 571, 643 |
| LpnPI | CCDG | 4 cut(s) | 42, 49, 398, 579 |
| Lsp1109I | GCAGC | 3 cut(s) | 569, 589, 647 |
| LweI | GCATC | 1 cut(s) | 595 |
| MaeI | CTAG | 1 cut(s) | 447 |
| MaeII | ACGT | 1 cut(s) | 25 |
| MaeIII | GTNAC | 1 cut(s) | 404 |
| MalI | GATC | 3 cut(s) | 51, 573, 645 |
| MbiI | CCGCTC | 1 cut(s) | 204 |
| MboI | GATC | 3 cut(s) | 49, 571, 643 |
| MboII | GAAGA | 5 cut(s) | 71, 107, 370, 382, 764 |
| MfeI | CAATTG | 2 cut(s) | 104, 504 |
| MflI | RGATCY | 1 cut(s) | 571 |
| MhlI | GDGCHC | 1 cut(s) | 36 |
| MmeI | TCCRAC | 1 cut(s) | 106 |
| MroXI | GAANNNNTTC | 1 cut(s) | 99 |
| MseI | TTAA | 4 cut(s) | 176, 275, 435, 525 |
| MspA1I | CMGCKG | 1 cut(s) | 704 |
| MspI | CCGG | 1 cut(s) | 36 |
| MspR9I | CCNGG | 1 cut(s) | 36 |
| MunI | CAATTG | 2 cut(s) | 104, 504 |
| Mva1269I | GAATGC | 1 cut(s) | 217 |
| MvnI | CGCG | 1 cut(s) | 704 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 566, 611 |
| NciI | CCSGG | 1 cut(s) | 36 |
| NdeII | GATC | 3 cut(s) | 49, 571, 643 |
| NlaIII | CATG | 2 cut(s) | 538, 768 |
| NspI | RCATGY | 1 cut(s) | 768 |
| NspV | TTCGAA | 1 cut(s) | 209 |
| PaeR7I | CTCGAG | 1 cut(s) | 668 |
| PctI | GAATGC | 1 cut(s) | 217 |
| PdmI | GAANNNNTTC | 1 cut(s) | 99 |
| PkrI | GCNGC | 3 cut(s) | 559, 604, 637 |
| PstI | CTGCAG | 1 cut(s) | 571 |
| PsuI | RGATCY | 1 cut(s) | 571 |
| RsaI | GTAC | 2 cut(s) | 197, 296 |
| RsaNI | GTAC | 2 cut(s) | 196, 295 |
| SacII | CCGCGG | 1 cut(s) | 705 |
| SaqAI | TTAA | 4 cut(s) | 176, 275, 435, 525 |
| SatI | GCNGC | 3 cut(s) | 558, 603, 636 |
| Sau3AI | GATC | 3 cut(s) | 49, 571, 643 |
| ScrFI | CCNGG | 1 cut(s) | 36 |
| SduI | GDGCHC | 1 cut(s) | 36 |
| SetI | ASST | 9 cut(s) | 28, 134, 150, 249, 307, 387, 552, 568, 640 |
| SfaNI | GCATC | 1 cut(s) | 595 |
| SfcI | CTRYAG | 1 cut(s) | 567 |
| Sfr274I | CTCGAG | 1 cut(s) | 668 |
| Sfr303I | CCGCGG | 1 cut(s) | 705 |
| SfuI | TTCGAA | 1 cut(s) | 209 |
| SgrBI | CCGCGG | 1 cut(s) | 705 |
| SlaI | CTCGAG | 1 cut(s) | 668 |
| SmlI | CTYRAG | 1 cut(s) | 668 |
| SmoI | CTYRAG | 1 cut(s) | 668 |
| SsiI | CCGC | 5 cut(s) | 204, 215, 314, 702, 704 |
| SspMI | CTAG | 1 cut(s) | 447 |
| StyD4I | CCNGG | 1 cut(s) | 34 |
| TaiI | ACGT | 1 cut(s) | 28 |
| TaqI | TCGA | 5 cut(s) | 209, 669, 720, 736, 783 |
| Tru1I | TTAA | 4 cut(s) | 176, 275, 435, 525 |
| Tru9I | TTAA | 4 cut(s) | 176, 275, 435, 525 |
| TscAI | CASTG | 1 cut(s) | 36 |
| TseI | GCWGC | 3 cut(s) | 557, 602, 635 |
| TspDTI | ATGAA | 3 cut(s) | 342, 371, 551 |
| TspRI | CASTG | 1 cut(s) | 36 |
| XapI | RAATTY | 4 cut(s) | 138, 237, 514, 728 |
| XceI | RCATGY | 1 cut(s) | 768 |
| XhoI | CTCGAG | 1 cut(s) | 668 |
| XmnI | GAANNNNTTC | 1 cut(s) | 99 |
| XspI | CTAG | 1 cut(s) | 447 |