Rmu_sc0008441.1_g000011

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008441.1
Physical Location & Seq
Forward (+)
70426 .. 71510
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008441.1_g000011.1.cds

Sequence Viewer

Length: 741 bp
atgttagcagatgaagacattcaattgtgcaagtcttggagggctgttagccaagatccagcaaagggtacggaacgaagaaaagatgatctatggatagaggtacaccaacactatgtcgaacattgggatggatatgtccgatcattgcaagcttttcaagggaggtggaaaaccttgaaagtcaaactttttgattggcattgtgcgttaaggcaagcgaaaagttggtacaagagtggtgcgaatatgattgatgagcgacgtcaagcacaagatttgtggagagctgcgatgaccaaatcaaaaggaaaacaaaaaaaaggtgatttcattagtttagaatgttacgagattgttaaggggtttcaacaatttggtgacattccaagccattcctcttcggttggaggaacccccaggggaggaactgaacaaatgcacacacaacaatccattcctgattctcatgtccagttggacatagatgcagatgagctaaatgccgatacaactcccaatccttcggtgaggcctcaaggaaaaaaggctgccaaagaagctattcagaaaggaaagaaagcatctaatgattccagtcctctgacagccgctgtggagactatagcaaccaaccaaacatcaatgttatctgccaaggagaaacgcgatgaggaatattctcgacatcttcatgaccaacaacaacgagattatatacgcttgcaaatggatatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

28.14

Weight (kDa)

8.32

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 268
AccII CGCG 1 cut(s) 669
AciI CCGC 1 cut(s) 612
AclWI GGATC 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 3 cut(s) 70, 105, 233
AfiI CCNNNNNNNGG 2 cut(s) 65, 425
AgsI TTSAA 4 cut(s) 23, 161, 181, 371
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 4 cut(s) 155, 290, 499, 563
AluI AGCT 4 cut(s) 155, 290, 499, 563
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 2 cut(s) 290, 551
Asp700I GAANNNNTTC 2 cut(s) 18, 564
AsuHPI GGTGA 3 cut(s) 338, 392, 541
BaeI ACNNNNGTAYC 2 cut(s) 223, 256
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 277, 538
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 3 cut(s) 291, 552, 612
BlsI GCNGC 3 cut(s) 292, 553, 613
Bme1390I CCNGG 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 478, 593
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 419, 420, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 425
Bse1I ACTGG 2 cut(s) 475, 597
Bse3DI GCAATG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 419, 420, 657
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 65, 425
BseMI GCAATG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 475, 597
BseXI GCAGC 2 cut(s) 277, 538
Bsh1236I CGCG 1 cut(s) 669
BshFI GGCC 1 cut(s) 535
BslI CCNNNNNNNGG 2 cut(s) 65, 425
BsmAI GTCTC 1 cut(s) 614
BsnI GGCC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 55, 88, 143
BspACI CCGC 1 cut(s) 612
BspANI GGCC 1 cut(s) 535
BspFNI CGCG 1 cut(s) 669
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 2 cut(s) 475, 597
BssECI CCNNGG 3 cut(s) 419, 420, 657
BssMI GATC 3 cut(s) 55, 88, 143
BssNI GRCGYC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 406
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 153, 219, 725
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 669
BstKTI GATC 3 cut(s) 58, 91, 146
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 55, 88, 143
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 277, 538
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 535
BtgZI GCGATG 2 cut(s) 308, 684
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 153, 219, 725
CaiI CAGNNNCTG 1 cut(s) 614
CciI TCATGA 1 cut(s) 694
Csp6I GTAC 3 cut(s) 69, 104, 232
CspCI CAANNNNNGTGG 4 cut(s) 149, 184, 263, 298
CviAII CATG 2 cut(s) 470, 695
CviQI GTAC 3 cut(s) 69, 104, 232
DpnI GATC 3 cut(s) 57, 90, 145
DpnII GATC 3 cut(s) 55, 88, 143
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 657
Eco147I AGGCCT 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 2 cut(s) 473, 698
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 469, 694
Fnu4HI GCNGC 3 cut(s) 291, 552, 612
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 291, 552, 612
GluI GCNGC 3 cut(s) 291, 552, 612
HaeIII GGCC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 2 cut(s) 473, 698
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 464, 593
HphI GGTGA 3 cut(s) 338, 392, 541
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 143, 570, 606
Hpy188III TCNNGA 3 cut(s) 461, 684, 695
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 534
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 30, 151, 442, 491, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpySE526I ACGT 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 2 cut(s) 473, 698
Kzo9I GATC 3 cut(s) 55, 88, 143
LpnPI CCDG 6 cut(s) 72, 406, 433, 474, 488, 610
Lsp1109I GCAGC 2 cut(s) 277, 538
LweI GCATC 2 cut(s) 478, 593
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 347, 380
MalI GATC 3 cut(s) 57, 90, 145
MboI GATC 3 cut(s) 55, 88, 143
MboII GAAGA 4 cut(s) 26, 90, 393, 683
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 55
MluCI AATT 2 cut(s) 23, 374
MmeI TCCRAC 2 cut(s) 388, 459
MroXI GAANNNNTTC 2 cut(s) 18, 564
MseI TTAA 2 cut(s) 212, 360
MslI CAYNNNNRTG 2 cut(s) 129, 693
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 421
MunI CAATTG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 1 cut(s) 560
NdeII GATC 3 cut(s) 55, 88, 143
NlaIII CATG 2 cut(s) 473, 698
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 380
PagI TCATGA 1 cut(s) 694
PasI CCCWGGG 1 cut(s) 420
PceI AGGCCT 1 cut(s) 535
PdmI GAANNNNTTC 2 cut(s) 18, 564
PfeI GAWTC 2 cut(s) 464, 593
PkrI GCNGC 3 cut(s) 292, 553, 613
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 3 cut(s) 70, 105, 233
RsaNI GTAC 3 cut(s) 69, 104, 232
RseI CAYNNNNRTG 2 cut(s) 129, 693
SaqAI TTAA 2 cut(s) 212, 360
SatI GCNGC 3 cut(s) 291, 552, 612
Sau3AI GATC 3 cut(s) 55, 88, 143
ScrFI CCNGG 1 cut(s) 421
SetI ASST 9 cut(s) 105, 157, 170, 179, 268, 292, 328, 501, 565
SfaNI GCATC 2 cut(s) 478, 593
SfcI CTRYAG 1 cut(s) 624
SmiMI CAYNNNNRTG 2 cut(s) 129, 693
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
Sse9I AATT 2 cut(s) 23, 374
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 1 cut(s) 612
SspI AATATT 1 cut(s) 680
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 657
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 120, 685
TasI AATT 2 cut(s) 23, 374
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 2 cut(s) 464, 593
Tru1I TTAA 2 cut(s) 212, 360
Tru9I TTAA 2 cut(s) 212, 360
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 290, 551
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 27, 322, 683
TspGWI ACGGA 1 cut(s) 86
XmnI GAANNNNTTC 2 cut(s) 18, 564
ZraI GACGTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.