FvH4_6g40561

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
32037957 .. 32038475
519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40561.t1

Sequence Viewer

Length: 381 bp
ATGGCCGGTGGATCTACTTCCGATAGAAAACTTTGGGAAGCCGATGAAGACCTTCAATTGTGCAAGTCATGGAGATTTGTTAGCCACGATGCGGAAAAGGGCACCGATCAAAAGAAAGCGCAATTTTGGGATAATGTTCTCAAGCACTACTTCGACAATTTTCCGGATGCCTACCCTCGAACAACAAGTGCAATGATAGGAAGGTGGAAATCTCTAATAGAATTGTTTCAATGGCATTGTGCGATAAGGCAAGCTAAAGCTTGGGTAAAAAGCGGTTCATGTCTTGTTGATGAGTACAAAAGAACACAAAATATATGGAAGCAAGAGATGACAAGGATCAAAGGAAAGAAACAAAAGAGCGAGTTCAAGGCCCAAGATTGA

Protein Analysis

127

Amino Acids

14.89

Weight (kDa)

9.28

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 2 cut(s) 92, 273
AclWI GGATC 2 cut(s) 19, 344
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 56, 230, 367
AluBI AGCT 2 cut(s) 254, 260
AluI AGCT 2 cut(s) 254, 260
AlwI GGATC 2 cut(s) 19, 344
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 2 cut(s) 3, 369
Asp700I GAANNNNTTC 2 cut(s) 51, 225
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 2 cut(s) 79, 157
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 163
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 2 cut(s) 5, 371
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 6, 164
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 2 cut(s) 5, 371
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 11, 106, 336
BspACI CCGC 2 cut(s) 92, 273
BspANI GGCC 2 cut(s) 5, 371
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 19, 344
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 3 cut(s) 11, 106, 336
BstC8I GCNNGC 1 cut(s) 252
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 14, 109, 339
BstMBI GATC 3 cut(s) 11, 106, 336
BstSLI GKGCMC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 2 cut(s) 5, 371
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 69, 279
CviJI RGCY 6 cut(s) 5, 41, 84, 254, 260, 371
CviKI_1 RGCY 6 cut(s) 5, 41, 84, 254, 260, 371
CviQI GTAC 1 cut(s) 295
DpnI GATC 3 cut(s) 13, 108, 338
DpnII GATC 3 cut(s) 11, 106, 336
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 2 cut(s) 72, 282
FaiI YATR 4 cut(s) 70, 280, 314, 316
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 2 cut(s) 68, 278
FokI GGATG 1 cut(s) 179
GlaI GCGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 5, 371
HapII CCGG 2 cut(s) 6, 164
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 72, 282
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 258
HpaII CCGG 2 cut(s) 6, 164
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 62, 195
HpyCH4V TGCA 2 cut(s) 63, 191
Hsp92II CATG 2 cut(s) 72, 282
HspAI GCGC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 11, 106, 336
LpnPI CCDG 2 cut(s) 19, 177
LweI GCATC 2 cut(s) 79, 157
MalI GATC 3 cut(s) 13, 108, 338
MboI GATC 3 cut(s) 11, 106, 336
MboII GAAGA 1 cut(s) 59
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 56, 122, 157, 221
MnlI CCTC 1 cut(s) 186
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 51, 225
MspI CCGG 2 cut(s) 6, 164
MunI CAATTG 1 cut(s) 56
NdeII GATC 3 cut(s) 11, 106, 336
NlaIII CATG 2 cut(s) 72, 282
NlaIV GGNNCC 1 cut(s) 103
PdmI GAANNNNTTC 2 cut(s) 51, 225
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 370
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
Sau3AI GATC 3 cut(s) 11, 106, 336
Sau96I GGNCC 1 cut(s) 370
SduI GDGCHC 1 cut(s) 104
SetI ASST 4 cut(s) 54, 206, 256, 262
SfaNI GCATC 2 cut(s) 79, 157
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 4 cut(s) 56, 122, 157, 221
SsiI CCGC 2 cut(s) 92, 273
TaqI TCGA 2 cut(s) 153, 178
TasI AATT 4 cut(s) 56, 122, 157, 221
TatI WGTACW 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 60, 267
XmnI GAANNNNTTC 2 cut(s) 51, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.