Rw1G008260

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000127
Physical Location & Seq
Reverse (-)
17713594 .. 17718762
5169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008260.1

Sequence Viewer

Length: 930 bp
ATGCAATGGATGGATGCTCGGGCATCGAGAAGGAAAATCTGTGATCCATGGAGAAAGACCATACCATGGTCAAAGGCGAAAGACCATGTGGAGATACCATCATTGATCCATGGAAAATTTGCTGGCGATCCCTTCGTTGCAACTAGCTATGAGTGTGAAAGGATTGATTTTAAACAGTTGATACACAATTCATTGGTGGAATTAAATGAAAATAATTCTTTCCAACACCTCCCAACTGATGTCACAAATATGGCCGCTAAAAATACCAAGAGAGGAAGAAAAAAGTTCTTAAAACAATCTTTTGGTGAGAAAGTTGATGAAGGAAAAACTGAATTCAGTCATGTTAGATCAAAGAGATTGAAAAGAATGTTTTGTCCAAGCATTACTGAAGGATCTAATGAATGTGAGAATGGAAGTCAACTTATAGATGGTGATAAAAATAGTACTCCAGGTCAATGCCAACGATCATATGGTCAAGCGTCATATCAAAGGGCGAAGCAAGGATCAACTGTGAGATATGAAGATTTCGGTGATAACAGCTATAGATGTGAGCATTGTGGTGCACGATTCTGGCGTGGAGAAGCTGTTAAACGACCATCCTTTAATGCATCCATCACTTATACAAATTGTTGCAAAAAAGGCGAAATCAAACTAGAACAAGCAAAGCCAACACCGTTATTTCTTGATAATCTATTAAATCCAGATAATAGCCCAGAAAGCAGATTATTTAGAGAAAATATACGAGTTTATAATTCAATGTTTTCCTTTACATCGATGGGAGCATGTATTGATCATAAAATAAATAATGGATCAGGTCCTTACGTTTTTAAAATTAGCGGTCAAGTACATCATTTAATGGGATCTATATTACCTTCTAATGGAGAATCTCTGCTCAATTATATATATATGATACGAAAAATGAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N REPA_OB_2

Protein Analysis

309

Amino Acids

35.35

Weight (kDa)

9.28

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AccB7I CCANNNNNTGG 1 cut(s) 66
AciI CCGC 2 cut(s) 255, 837
AclWI GGATC 7 cut(s) 38, 100, 122, 400, 511, 817, 868
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 116, 332
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 2 cut(s) 445, 846
AfiI CCNNNNNNNGG 2 cut(s) 66, 878
AgsI TTSAA 2 cut(s) 361, 756
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 3 cut(s) 147, 540, 584
AluI AGCT 3 cut(s) 147, 540, 584
Alw21I GWGCWC 1 cut(s) 565
Alw44I GTGCAC 1 cut(s) 561
AlwI GGATC 7 cut(s) 38, 100, 122, 400, 511, 817, 868
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 1 cut(s) 252
ApaLI GTGCAC 1 cut(s) 561
ApoI RAATTY 2 cut(s) 116, 332
AspS9I GGNCC 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 317, 443, 542
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 565
BccI CCATC 6 cut(s) 4, 106, 422, 604, 620, 769
BciT130I CCWGG 1 cut(s) 450
BclI TGATCA 1 cut(s) 790
BfaI CTAG 2 cut(s) 144, 653
BfmI CTRYAG 1 cut(s) 541
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 815
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 815
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 3 cut(s) 4, 32, 617
BpmI CTGGAG 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 773
BsaJI CCNNGG 3 cut(s) 47, 65, 109
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 878
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 450
BseCI ATCGAT 1 cut(s) 773
BseDI CCNNGG 3 cut(s) 47, 65, 109
BseGI GGATG 4 cut(s) 15, 19, 596, 608
BseLI CCNNNNNNNGG 2 cut(s) 66, 878
BseMI GCAATG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 565
BshFI GGCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 773
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 66, 878
BsnI GGCC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 565
Bsp19I CCATGG 3 cut(s) 47, 65, 109
BspACI CCGC 2 cut(s) 255, 837
BspANI GGCC 1 cut(s) 254
BspDI ATCGAT 1 cut(s) 773
BspPI GGATC 7 cut(s) 38, 100, 122, 400, 511, 817, 868
BsrDI GCAATG 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 47, 65, 109
BssT1I CCWWGG 3 cut(s) 47, 65, 109
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 3 cut(s) 177, 511, 675
BstC8I GCNNGC 1 cut(s) 124
BstDSI CCRYGG 3 cut(s) 47, 65, 109
BstF5I GGATG 4 cut(s) 15, 19, 596, 608
BstMWI GCNNNNNNNGC 2 cut(s) 639, 717
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 565
BstX2I RGATCY 2 cut(s) 392, 860
BstYI RGATCY 2 cut(s) 392, 860
Bsu15I ATCGAT 1 cut(s) 773
BsuRI GGCC 1 cut(s) 254
BsuTUI ATCGAT 1 cut(s) 773
BtgI CCRYGG 3 cut(s) 47, 65, 109
BtsCI GGATG 4 cut(s) 15, 19, 596, 608
Cac8I GCNNGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 815
ClaI ATCGAT 1 cut(s) 773
CseI GACGC 1 cut(s) 468
Csp6I GTAC 2 cut(s) 444, 845
CviAII CATG 6 cut(s) 48, 66, 86, 110, 341, 783
CviJI RGCY 6 cut(s) 147, 254, 540, 584, 667, 711
CviKI_1 RGCY 6 cut(s) 147, 254, 540, 584, 667, 711
CviQI GTAC 2 cut(s) 444, 845
DraI TTTAAA 2 cut(s) 172, 829
EaeI YGGCCR 1 cut(s) 252
Eco130I CCWWGG 3 cut(s) 47, 65, 109
Eco47I GGWCC 1 cut(s) 815
Eco57I CTGAAG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 3 cut(s) 47, 65, 109
EcoT22I ATGCAT 1 cut(s) 610
ErhI CCWWGG 3 cut(s) 47, 65, 109
FaeI CATG 6 cut(s) 51, 69, 89, 113, 344, 786
FatI CATG 6 cut(s) 47, 65, 85, 109, 340, 782
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 4 cut(s) 22, 26, 583, 595
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 144, 653
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 254
HgaI GACGC 1 cut(s) 468
Hin1II CATG 6 cut(s) 51, 69, 89, 113, 344, 786
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HinfI GANTC 2 cut(s) 567, 884
HphI GGTGA 3 cut(s) 317, 443, 542
Hpy166II GTNNAC 2 cut(s) 419, 563
Hpy188III TCNNGA 3 cut(s) 27, 683, 701
Hpy8I GTNNAC 2 cut(s) 419, 563
HpyAV CCTTC 5 cut(s) 24, 142, 314, 383, 882
HpyCH4III ACNGT 3 cut(s) 177, 511, 675
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 5 cut(s) 4, 140, 563, 608, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 639, 717
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 6 cut(s) 51, 69, 89, 113, 344, 786
Ksp22I TGATCA 1 cut(s) 790
LmnI GCTCC 1 cut(s) 779
LpnPI CCDG 7 cut(s) 108, 435, 462, 556, 714, 726, 798
LweI GCATC 3 cut(s) 4, 32, 617
MaeI CTAG 2 cut(s) 144, 653
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 1 cut(s) 241
MboII GAAGA 2 cut(s) 288, 533
MflI RGATCY 2 cut(s) 392, 860
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 9 cut(s) 116, 187, 200, 214, 332, 625, 751, 831, 895
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 2 cut(s) 239, 266
Mph1103I ATGCAT 1 cut(s) 610
MseI TTAA 9 cut(s) 171, 203, 290, 588, 603, 695, 828, 854, 928
MslI CAYNNNNRTG 2 cut(s) 248, 558
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 639, 717
NcoI CCATGG 3 cut(s) 47, 65, 109
NdeI CATATG 1 cut(s) 469
NlaIII CATG 6 cut(s) 51, 69, 89, 113, 344, 786
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PfeI GAWTC 2 cut(s) 567, 884
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 815
PsiI TTATAA 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 1 cut(s) 815
PspPPI RGGWCCY 1 cut(s) 815
PsuI RGATCY 2 cut(s) 392, 860
RsaI GTAC 2 cut(s) 445, 846
RsaNI GTAC 2 cut(s) 444, 845
RseI CAYNNNNRTG 2 cut(s) 248, 558
SaqAI TTAA 9 cut(s) 171, 203, 290, 588, 603, 695, 828, 854, 928
SatI GCNGC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 815
ScaI AGTACT 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 565
SetI ASST 8 cut(s) 149, 231, 454, 542, 586, 817, 825, 874
SfaNI GCATC 3 cut(s) 4, 32, 617
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 815
SmiMI CAYNNNNRTG 2 cut(s) 248, 558
Sse9I AATT 9 cut(s) 116, 187, 200, 214, 332, 625, 751, 831, 895
SsiI CCGC 2 cut(s) 255, 837
SspMI CTAG 2 cut(s) 144, 653
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 3 cut(s) 47, 65, 109
TaaI ACNGT 3 cut(s) 177, 511, 675
TaiI ACGT 1 cut(s) 825
TaqI TCGA 2 cut(s) 26, 773
TasI AATT 9 cut(s) 116, 187, 200, 214, 332, 625, 751, 831, 895
TatI WGTACW 2 cut(s) 443, 844
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 567, 884
Tru1I TTAA 9 cut(s) 171, 203, 290, 588, 603, 695, 828, 854, 928
Tru9I TTAA 9 cut(s) 171, 203, 290, 588, 603, 695, 828, 854, 928
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 5 cut(s) 180, 222, 333, 414, 534
Van91I CCANNNNNTGG 1 cut(s) 66
VneI GTGCAC 1 cut(s) 561
VpaK11BI GGWCC 1 cut(s) 815
XapI RAATTY 2 cut(s) 116, 332
XceI RCATGY 1 cut(s) 786
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XspI CTAG 2 cut(s) 144, 653
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.