Rmu_sc0001565.1_g000058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001565.1
OG0000127
Physical Location & Seq
Forward (+)
283997 .. 284917
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001565.1_g000058.1.cds

Sequence Viewer

Length: 921 bp
atgaccaaattgaaaggaaaacaaaaaatagttgatttcattagtttagaatgttacgagattgtaaaggggtttcaacaatttggtgacattccaagccattcctcttcgactggaggaacctccaggggaggaactgaatggatgcacacacaacaatccattcctgattctcatgtccagttggacaaagatgcagatgaggtaaatgtcaatgcaactctcaatccttcggtgaggcctcaaggaaataaggctgccaaagaagctattcgaaaaggaaagaaagcatctaataattccagtcctctgacagccgctgtggagactatagaaaccaaccaaacatcaatgttgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccatgaccaacaacaacgagattatatacgcttgcaattggatattcaagggagggaattcaaaattcaaaagaggaaagagcgtattatggagatggacacaggtaagatgacaccaaccaaaaagaaatactggcaaagaaaacaaaaaaaaaattgcggagaaagacccgtggatctaacatcccacaaccaccattcaccggtggatattatccaccaacccctttccctagtggctatccacaaccaccattctccggtgggtattatccacaatctcatttccccggtggttttccacaaccaacattcacctgtggcttcccacaaccaccattcaccggtggagtcccttccccacctttcttttctggtgaatcctccaaccccaaccatatggatgacccctcaaacacaaattggattcctaatgaagatgaggtttaggaaaattagggagttatatattttaaataattgtattgttatgattccaatgcttggtttttcacttatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.92

Weight (kDa)

9.53

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 902
AciI CCGC 2 cut(s) 318, 558
AclWI GGATC 1 cut(s) 582
AcsI RAATTY 2 cut(s) 455, 462
AfiI CCNNNNNNNGG 4 cut(s) 601, 658, 742, 902
AgeI ACCGGT 2 cut(s) 601, 742
AgsI TTSAA 5 cut(s) 13, 77, 446, 460, 467
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 582
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 455, 462
AsiGI ACCGGT 2 cut(s) 601, 742
Asp700I GAANNNNTTC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 6 cut(s) 98, 247, 591, 705, 732, 787
AsuII TTCGAA 1 cut(s) 274
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 127
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 2 cut(s) 258, 318
BlsI GCNGC 2 cut(s) 259, 319
Bme1390I CCNGG 2 cut(s) 127, 689
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 127, 689
BmsI GCATC 3 cut(s) 135, 184, 299
BpmI CTGGAG 2 cut(s) 109, 135
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 689
BsaJI CCNNGG 4 cut(s) 126, 363, 570, 687
BsaWI WCCGGW 3 cut(s) 601, 658, 742
Bsc4I CCNNNNNNNGG 4 cut(s) 601, 658, 742, 902
Bse118I RCCGGY 2 cut(s) 601, 742
Bse1I ACTGG 4 cut(s) 118, 181, 303, 536
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 4 cut(s) 126, 363, 570, 687
BseGI GGATG 3 cut(s) 150, 581, 807
BseLI CCNNNNNNNGG 4 cut(s) 601, 658, 742, 902
BseNI ACTGG 4 cut(s) 118, 181, 303, 536
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 241
BshTI ACCGGT 2 cut(s) 601, 742
BsiSI CCGG 4 cut(s) 602, 659, 689, 743
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 4 cut(s) 601, 658, 742, 902
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 274
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 2 cut(s) 318, 558
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 582
BspT104I TTCGAA 1 cut(s) 274
BsrFI RCCGGY 2 cut(s) 601, 742
BsrI ACTGG 4 cut(s) 118, 181, 303, 536
BssAI RCCGGY 2 cut(s) 601, 742
BssECI CCNNGG 4 cut(s) 126, 363, 570, 687
BssMI GATC 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 3 cut(s) 150, 581, 807
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 125, 687
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 798
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 3 cut(s) 150, 581, 807
Cac8I GCNNGC 1 cut(s) 431
CaiI CAGNNNCTG 1 cut(s) 320
Cfr10I RCCGGY 2 cut(s) 601, 742
CspAI ACCGGT 2 cut(s) 601, 742
CviAII CATG 2 cut(s) 176, 401
CviJI RGCY 7 cut(s) 99, 241, 257, 269, 317, 638, 722
CviKI_1 RGCY 7 cut(s) 99, 241, 257, 269, 317, 638, 722
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
DraI TTTAAA 1 cut(s) 873
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 363
Eco147I AGGCCT 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 179, 404
FaqI GGGAC 1 cut(s) 736
FatI CATG 2 cut(s) 175, 400
FauNDI CATATG 1 cut(s) 797
Fnu4HI GCNGC 2 cut(s) 258, 318
FokI GGATG 3 cut(s) 157, 568, 814
Fsp4HI GCNGC 2 cut(s) 258, 318
FspBI CTAG 1 cut(s) 632
GluI GCNGC 2 cut(s) 258, 318
GsuI CTGGAG 2 cut(s) 109, 135
HaeIII GGCC 1 cut(s) 241
HapII CCGG 4 cut(s) 602, 659, 689, 743
Hin1II CATG 2 cut(s) 179, 404
HinfI GANTC 5 cut(s) 170, 749, 778, 825, 892
HpaII CCGG 4 cut(s) 602, 659, 689, 743
HphI GGTGA 6 cut(s) 98, 247, 591, 705, 732, 787
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 240, 764
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 4 cut(s) 148, 197, 218, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 2 cut(s) 179, 404
Kzo9I GATC 1 cut(s) 574
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 3 cut(s) 135, 184, 299
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 53, 86
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 2 cut(s) 99, 847
MfeI CAATTG 1 cut(s) 434
MflI RGATCY 1 cut(s) 574
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 2 cut(s) 165, 809
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 872
MslI CAYNNNNRTG 2 cut(s) 399, 800
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 4 cut(s) 602, 659, 689, 743
MspR9I CCNGG 2 cut(s) 127, 689
MunI CAATTG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 689
NdeI CATATG 1 cut(s) 797
NdeII GATC 1 cut(s) 574
NlaIII CATG 2 cut(s) 179, 404
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 86
NspV TTCGAA 1 cut(s) 274
PceI AGGCCT 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 4 cut(s) 170, 778, 825, 892
PflMI CCANNNNNTGG 1 cut(s) 902
PinAI ACCGGT 2 cut(s) 601, 742
PkrI GCNGC 2 cut(s) 259, 319
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 399, 800
SaqAI TTAA 1 cut(s) 872
SatI GCNGC 2 cut(s) 258, 318
Sau3AI GATC 1 cut(s) 574
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 2 cut(s) 127, 689
SetI ASST 8 cut(s) 125, 207, 271, 376, 505, 718, 765, 845
SfaNI GCATC 3 cut(s) 135, 184, 299
SfcI CTRYAG 1 cut(s) 330
SfuI TTCGAA 1 cut(s) 274
SgrAI CRCCGGYG 2 cut(s) 601, 742
SmiMI CAYNNNNRTG 2 cut(s) 399, 800
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 2 cut(s) 318, 558
SspMI CTAG 1 cut(s) 632
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 125, 687
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 110, 274, 391
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 4 cut(s) 170, 778, 825, 892
Tru1I TTAA 1 cut(s) 872
Tru9I TTAA 1 cut(s) 872
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 28, 848
Van91I CCANNNNNTGG 1 cut(s) 902
XapI RAATTY 2 cut(s) 455, 462
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.