Rmu_sc0021213.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021213.1
Physical Location & Seq
Forward (+)
567 .. 1987
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021213.1_g000002.1.cds

Sequence Viewer

Length: 798 bp
atggccgaacagaggggaaacacacgtccagtggccggacacgtgggagatcaaagtgaaaatgataataccgaagaaaaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaagctaaaggaaagaagacagcgaaagatcaaagtcctttgtcaagcacactcgagagtatagcgaacaaccaaatagaggcaaccgcgggcaagaaaaaacttgatgaggaagtcgctcgaagtctccaagagaaaaatcaacgagcatgtatcctcttgcaaatcgaaatgcgaaaagagaaactcctattacaagagaggaaagagcgaattaaagagagggaagagcgaaataaagagagggaagagcgtattatggagattgatacaagtcaaatgatgccaaataaaaaatgttattggtcaagaaagcaaaagaagatagcggagaaagaagatcttggcgagcagactccaccttctatgggtggatactatccgcaaccaaattttggtggtgcatacccacaacctccttaccccggtgcatactcacaaccaccttacccctgtgcatacctacaaccaccttgccccgatggattcccacaacctcccttcaccggtggattcccaccacctcccttcaccagtggattcccacaactctcttaccccggtggatactatccgcaaccaccttacctagggggatatcttacacaaccacaattttcacttttctctacgggtgattccaccaaccctaaccctaatgatgaaccttca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.18

Weight (kDa)

6.09

Isoelectric Point (pI)

73.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 1 cut(s) 215
AciI CCGC 5 cut(s) 213, 215, 455, 509, 701
AcoI YGGCCR 2 cut(s) 3, 33
AcsI RAATTY 1 cut(s) 517
AcvI CACGTG 1 cut(s) 43
AfiI CCNNNNNNNGG 8 cut(s) 12, 35, 205, 494, 521, 551, 632, 716
AflIII ACRYGT 2 cut(s) 23, 40
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 1 cut(s) 110
AjiI CACGTC 1 cut(s) 26
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 2 cut(s) 3, 33
ApoI RAATTY 1 cut(s) 517
AsiGI ACCGGT 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 715
AsuC2I CCSGG 2 cut(s) 552, 687
AsuHPI GGTGA 3 cut(s) 622, 649, 773
AvaI CYCGRG 1 cut(s) 179
AvrII CCTAGG 1 cut(s) 715
BbrPI CACGTG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 149
BccI CCATC 2 cut(s) 81, 602
BciVI GTATCC 3 cut(s) 290, 494, 686
BcnI CCSGG 2 cut(s) 552, 687
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 716
BfuI GTATCC 3 cut(s) 290, 494, 686
BglII AGATCT 1 cut(s) 466
BlnI CCTAGG 1 cut(s) 715
Bme1390I CCNGG 2 cut(s) 552, 687
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 26
BmrFI CCNGG 2 cut(s) 552, 687
BmsI GCATC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 552, 687
BsaAI YACGTR 1 cut(s) 43
BsaJI CCNNGG 4 cut(s) 213, 550, 685, 715
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 8 cut(s) 12, 35, 205, 494, 521, 551, 632, 716
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 2 cut(s) 29, 660
BseDI CCNNGG 4 cut(s) 213, 550, 685, 715
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 8 cut(s) 12, 35, 205, 494, 521, 551, 632, 716
BseNI ACTGG 2 cut(s) 29, 660
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 2 cut(s) 5, 35
BshTI ACCGGT 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 4 cut(s) 36, 552, 633, 687
BslI CCNNNNNNNGG 8 cut(s) 12, 35, 205, 494, 521, 551, 632, 716
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 2 cut(s) 5, 35
BsoBI CYCGRG 1 cut(s) 179
Bsp143I GATC 3 cut(s) 49, 154, 466
BspACI CCGC 5 cut(s) 213, 215, 455, 509, 701
BspANI GGCC 2 cut(s) 5, 35
BspFNI CGCG 1 cut(s) 215
BspQI GCTCTTC 2 cut(s) 348, 369
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 2 cut(s) 29, 660
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 213, 550, 685, 715
BssMI GATC 3 cut(s) 49, 154, 466
BssT1I CCWWGG 1 cut(s) 715
Bst6I CTCTTC 2 cut(s) 348, 369
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 217, 476
BstDSI CCRYGG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 714
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 215
BstKTI GATC 3 cut(s) 52, 157, 469
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 3 cut(s) 49, 154, 466
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 550, 685
BstUI CGCG 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 3 cut(s) 290, 494, 686
BsuRI GGCC 2 cut(s) 5, 35
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 36, 667
Cac8I GCNNGC 2 cut(s) 217, 476
Cfr10I RCCGGY 1 cut(s) 632
Cfr42I CCGCGG 1 cut(s) 216
CspAI ACCGGT 1 cut(s) 632
CviAII CATG 1 cut(s) 276
CviJI RGCY 3 cut(s) 5, 35, 131
CviKI_1 RGCY 3 cut(s) 5, 35, 131
DpnI GATC 3 cut(s) 51, 156, 468
DpnII GATC 3 cut(s) 49, 154, 466
EaeI YGGCCR 2 cut(s) 3, 33
Eam1104I CTCTTC 2 cut(s) 348, 369
EarI CTCTTC 2 cut(s) 348, 369
Eco130I CCWWGG 1 cut(s) 715
Eco32I GATATC 1 cut(s) 725
Eco72I CACGTG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 714
EcoRV GATATC 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 715
FaeI CATG 1 cut(s) 279
FaiI YATR 7 cut(s) 188, 277, 386, 494, 532, 559, 586
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 1 cut(s) 275
FauI CCCGC 1 cut(s) 208
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 716
HaeIII GGCC 2 cut(s) 5, 35
HapII CCGG 4 cut(s) 36, 552, 633, 687
Hin1II CATG 1 cut(s) 279
HinfI GANTC 5 cut(s) 481, 612, 639, 666, 764
HpaII CCGG 4 cut(s) 36, 552, 633, 687
HphI GGTGA 3 cut(s) 622, 649, 773
Hpy188III TCNNGA 2 cut(s) 181, 435
HpyAV CCTTC 3 cut(s) 498, 637, 664
HpyCH4IV ACGT 2 cut(s) 25, 42
HpyCH4V TGCA 5 cut(s) 117, 289, 530, 557, 584
HpySE526I ACGT 2 cut(s) 25, 42
Hsp92II CATG 1 cut(s) 279
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 3 cut(s) 49, 154, 466
LguI GCTCTTC 2 cut(s) 348, 369
LpnPI CCDG 7 cut(s) 42, 49, 565, 592, 646, 673, 700
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 716
MaeII ACGT 2 cut(s) 25, 42
MalI GATC 3 cut(s) 51, 156, 468
MboI GATC 3 cut(s) 49, 154, 466
MboII GAAGA 7 cut(s) 86, 113, 154, 365, 386, 460, 476
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 466
MluCI AATT 4 cut(s) 110, 339, 517, 740
MlyI GAGTC 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 4 cut(s) 36, 552, 633, 687
MspR9I CCNGG 2 cut(s) 552, 687
MunI CAATTG 1 cut(s) 110
MvnI CGCG 1 cut(s) 215
NciI CCSGG 2 cut(s) 552, 687
NdeII GATC 3 cut(s) 49, 154, 466
NlaIII CATG 1 cut(s) 279
NspI RCATGY 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 179
PciSI GCTCTTC 2 cut(s) 348, 369
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 612, 639, 666, 764
PflMI CCANNNNNTGG 1 cut(s) 521
PinAI ACCGGT 1 cut(s) 632
PleI GAGTC 1 cut(s) 475
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 43
PspCI CACGTG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 466
SacII CCGCGG 1 cut(s) 216
SapI GCTCTTC 2 cut(s) 348, 369
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 3 cut(s) 49, 154, 466
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 552, 687
SfaNI GCATC 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 179
Sfr303I CCGCGG 1 cut(s) 216
SgrAI CRCCGGYG 1 cut(s) 632
SgrBI CCGCGG 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 4 cut(s) 110, 339, 517, 740
SsiI CCGC 5 cut(s) 213, 215, 455, 509, 701
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 2 cut(s) 550, 685
StyI CCWWGG 1 cut(s) 715
TaiI ACGT 2 cut(s) 28, 45
TaqI TCGA 3 cut(s) 180, 247, 294
TasI AATT 4 cut(s) 110, 339, 517, 740
TfiI GAWTC 4 cut(s) 612, 639, 666, 764
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 36, 667
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 36, 667
Van91I CCANNNNNTGG 1 cut(s) 521
XagI CCTNNNNNAGG 1 cut(s) 714
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 179
XmaJI CCTAGG 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.