FvH4_1g19463

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000127
Physical Location & Seq
Reverse (-)
11730260 .. 11731067
808 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19463.t1

Sequence Viewer

Length: 771 bp
ATGTCCAAAGGGAAATCAATCAAAAACCAAAAGGATTTCTCGAGTTTTGCTTGCTATGAAGTTGTTCAAGGTTTTCAAGCATTTCACGACATTCCATCTCCGACTGAGATGAGTGCGGCAACATCAATGGGAGGCAATGAAGGGATGTCTACGCAACCAAGTTGTGATGAATCTCCTATCAACTTAGAAAAAGATGTTGATGAAGTTGCTCCCGACCGGAATGTGCGACCTATAGGAAGAAAGGCTGCAAAGGAAGCACACCGAAAAGGGAAGGCGACCAAAGAAGAATCACCTGTTGCAACTGCTGTCGTGACGCTTGCAAACAGCCAAGCATCAATCTTGTCAGCAAGGGAAAAACGAGATGAAGCATACGCAAGGCAATTGCAAGACCAACAACAACGAGAATATATGCGGCTCCAAATGGATATGCGGAATGAGCAATTCAAAATCCAAGAGAGGGAAGAGCGTATCATGGAGATGAATCCAAGCACTATGTCGCCAGGGCCTAGGAAAGATTATTGGCTAGCAAAAAAAAAGGCGATAACGGAGACACAAGCAAATTTGTCGGGGTCTTTCCCCGGAGGATATCCCCAACCATCTTTCCCCGGAGGATATCCCCAAACACATTTCCCTGGTGGATATCCCCAAACACCCTATCCTGGTGGATGTTACCAACCACCTTCCACCGATGAATCTACAAACCCCATCAATGACAATGATCCTTCAAACACCGATTTCTTTTGTAATGAGAATAATAATCCTGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.5

Weight (kDa)

5.27

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 12 - 181 4.7e-12 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AciI CCGC 3 cut(s) 116, 412, 430
AclWI GGATC 1 cut(s) 713
AcsI RAATTY 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 457, 659
AgsI TTSAA 4 cut(s) 68, 77, 445, 726
AjnI CCWGG 3 cut(s) 499, 631, 658
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 63
AspA2I CCTAGG 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 2 cut(s) 579, 606
AsuHPI GGTGA 1 cut(s) 282
AsuNHI GCTAGC 1 cut(s) 523
AvaI CYCGRG 1 cut(s) 40
AvrII CCTAGG 1 cut(s) 506
BbvI GCAGC 1 cut(s) 232
BccI CCATC 3 cut(s) 103, 604, 713
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BciT130I CCWGG 3 cut(s) 501, 633, 660
BcnI CCSGG 2 cut(s) 579, 606
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 507, 524
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 3 cut(s) 117, 246, 413
BlnI CCTAGG 1 cut(s) 506
BlsI GCNGC 3 cut(s) 118, 247, 414
Bme1390I CCNGG 5 cut(s) 501, 579, 606, 633, 660
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 5 cut(s) 501, 579, 606, 633, 660
BmsI GCATC 1 cut(s) 341
BmtI GCTAGC 1 cut(s) 527
BpuMI CCSGG 2 cut(s) 579, 606
BsaJI CCNNGG 5 cut(s) 500, 506, 577, 604, 631
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 659
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 3 cut(s) 501, 633, 660
BseDI CCNNGG 5 cut(s) 500, 506, 577, 604, 631
BseGI GGATG 2 cut(s) 150, 671
BseLI CCNNNNNNNGG 2 cut(s) 457, 659
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 505
BsiEI CGRYCG 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 217, 579, 606
BslI CCNNNNNNNGG 2 cut(s) 457, 659
BsmAI GTCTC 1 cut(s) 542
BsnI GGCC 1 cut(s) 505
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 1 cut(s) 718
BspACI CCGC 3 cut(s) 116, 412, 430
BspANI GGCC 1 cut(s) 505
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 416
BspOI GCTAGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 713
BspQI GCTCTTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 5 cut(s) 500, 506, 577, 604, 631
BssMI GATC 1 cut(s) 718
BssT1I CCWWGG 1 cut(s) 506
Bst2UI CCWGG 3 cut(s) 501, 633, 660
Bst6I CTCTTC 1 cut(s) 456
BstC8I GCNNGC 3 cut(s) 52, 318, 525
BstDEI CTNAG 2 cut(s) 105, 184
BstF5I GGATG 2 cut(s) 150, 671
BstKTI GATC 1 cut(s) 721
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 1 cut(s) 718
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 254, 436
BstNI CCWGG 3 cut(s) 501, 633, 660
BstSCI CCNGG 5 cut(s) 499, 577, 604, 631, 658
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 505
BtsCI GGATG 2 cut(s) 150, 671
Cac8I GCNNGC 3 cut(s) 52, 318, 525
Cfr13I GGNCC 1 cut(s) 503
CseI GACGC 1 cut(s) 322
CviAII CATG 1 cut(s) 472
CviJI RGCY 5 cut(s) 245, 327, 415, 505, 523
CviKI_1 RGCY 5 cut(s) 245, 327, 415, 505, 523
DdeI CTNAG 2 cut(s) 105, 184
DpnI GATC 1 cut(s) 720
DpnII GATC 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 506
Eco32I GATATC 3 cut(s) 587, 614, 641
Eco88I CYCGRG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 3 cut(s) 499, 631, 658
EcoRV GATATC 3 cut(s) 587, 614, 641
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 1 cut(s) 475
FaiI YATR 8 cut(s) 57, 233, 370, 408, 410, 428, 473, 494
FatI CATG 1 cut(s) 471
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 117, 246, 413
FokI GGATG 2 cut(s) 157, 678
Fsp4HI GCNGC 3 cut(s) 117, 246, 413
FspBI CTAG 2 cut(s) 507, 524
GluI GCNGC 3 cut(s) 117, 246, 413
HaeIII GGCC 1 cut(s) 505
HapII CCGG 3 cut(s) 217, 579, 606
HgaI GACGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 475
HinfI GANTC 4 cut(s) 170, 287, 481, 692
HpaII CCGG 3 cut(s) 217, 579, 606
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 5 cut(s) 40, 86, 212, 310, 761
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 4 cut(s) 134, 265, 690, 732
HpyCH4V TGCA 4 cut(s) 248, 299, 320, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 436
HpyF3I CTNAG 2 cut(s) 105, 184
Hsp92II CATG 1 cut(s) 475
Kzo9I GATC 1 cut(s) 718
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 214, 420
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 507, 524
MaeIII GTNAC 2 cut(s) 310, 668
MalI GATC 1 cut(s) 720
MboI GATC 1 cut(s) 718
MboII GAAGA 3 cut(s) 249, 296, 473
MfeI CAATTG 1 cut(s) 380
MluCI AATT 4 cut(s) 380, 440, 559, 766
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 4 cut(s) 125, 450, 575, 602
MroXI GAANNNNTTC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 3 cut(s) 217, 579, 606
MspR9I CCNGG 5 cut(s) 501, 579, 606, 633, 660
MunI CAATTG 1 cut(s) 380
MvaI CCWGG 3 cut(s) 501, 633, 660
MwoI GCNNNNNNNGC 2 cut(s) 254, 436
NciI CCSGG 2 cut(s) 579, 606
NdeII GATC 1 cut(s) 718
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 4 cut(s) 170, 287, 481, 692
PkrI GCNGC 3 cut(s) 118, 247, 414
Psp6I CCWGG 3 cut(s) 499, 631, 658
PspGI CCWGG 3 cut(s) 499, 631, 658
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 456
SatI GCNGC 3 cut(s) 117, 246, 413
Sau3AI GATC 1 cut(s) 718
Sau96I GGNCC 1 cut(s) 503
ScrFI CCNGG 5 cut(s) 501, 579, 606, 633, 660
SetI ASST 4 cut(s) 73, 232, 295, 682
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 4 cut(s) 380, 440, 559, 766
SsiI CCGC 3 cut(s) 116, 412, 430
SspMI CTAG 2 cut(s) 507, 524
StyD4I CCNGG 5 cut(s) 499, 577, 604, 631, 658
StyI CCWWGG 1 cut(s) 506
TaqI TCGA 1 cut(s) 41
TasI AATT 4 cut(s) 380, 440, 559, 766
TauI GCSGC 2 cut(s) 119, 415
TfiI GAWTC 4 cut(s) 170, 287, 481, 692
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 7 cut(s) 72, 153, 183, 216, 378, 494, 705
TspGWI ACGGA 1 cut(s) 560
XapI RAATTY 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 40
XmaJI CCTAGG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 507, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.