FvH4_2g18491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000127
Physical Location & Seq
Reverse (-)
15875829 .. 15877771
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18491.t1

Sequence Viewer

Length: 735 bp
ATGGAAGCAAGAGATGACAAGGATCAAAGGAAAGAAACAAAAGAGCGAGTTCAAGACGCAAGATTGCTACGCTATCGTGGAAGGTTTCAAATGTTCCAAGACATTCCTAGCAACATGGAGATGCATGAGTCACCATTAATGGGAGCCGATTGTGAAAGGATGGCTTCACAATCAACTCAACATGAAGAAGTTGATGAACCTCCTATCAACTTGGCCCAAGATAGTAATGAGGTACCCCCGAATCCAAATGTGGGGCCTATTGGAAGGAAGACAACAAAAAACACCGCCTGGAAAGGAAATAAGGCGGTCAAAGATGCGTGTCCCATGACATCCGCTGTTGTCACGATTGCAACCAACCGATCATCAATATTGCAATTGAGGGAGAAACGCGACGAGACATACGCAAAACAATTGCAAGAGCAACAACAACGAGAATATATGCGATTGCAAATGGATCTTCAGAGTGAGCACTTCAAACTCCAAGAGAGGGAAGATCGTATCAAAGAGAGAAAGAAGAAAAGATTATGGAGACAGGCTCCAACAGGCTCAACCCGCATGACCCCATTAAATGGCGGGTTTTTGACGGGCGGGTTTTCTTTAACACGTTTTGTAAAATGGGCGGGTTTCGAGCTGGCTCGCGGCTCGCGGCTCGCGGGCCAAAAAGCCAGGCCTAGCGAAAAGAGACGGCTTCAAAATTATGGGCAATGGTCTAGATATCATGGACTAAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.39

Weight (kDa)

9.93

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 1 cut(s) 569
AccII CGCG 4 cut(s) 390, 639, 646, 653
AclWI GGATC 2 cut(s) 30, 462
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 4 cut(s) 140, 251, 487, 569
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 4 cut(s) 53, 89, 475, 692
AjnI CCWGG 2 cut(s) 287, 665
AluBI AGCT 1 cut(s) 631
AluI AGCT 1 cut(s) 631
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 3 cut(s) 389, 523, 676
AlwI GGATC 2 cut(s) 30, 462
AoxI GGCC 4 cut(s) 213, 254, 655, 668
AseI ATTAAT 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 232
AspS9I GGNCC 3 cut(s) 214, 254, 655
AsuHPI GGTGA 1 cut(s) 123
BanI GGYRCC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 471
BccI CCATC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 701
BciT130I CCWGG 2 cut(s) 289, 667
BcoDI GTCTC 3 cut(s) 389, 523, 676
BfaI CTAG 3 cut(s) 108, 672, 711
BisI GCNGC 2 cut(s) 640, 647
BlsI GCNGC 2 cut(s) 641, 648
Bme1390I CCNGG 2 cut(s) 289, 667
BmgT120I GGNCC 3 cut(s) 214, 254, 655
BmiI GGNNCC 4 cut(s) 145, 234, 255, 537
BmrFI CCNGG 2 cut(s) 289, 667
BmsI GCATC 2 cut(s) 111, 304
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 520, 552
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 251, 487, 569
Bse3DI GCAATG 1 cut(s) 710
BseBI CCWGG 2 cut(s) 289, 667
BseGI GGATG 2 cut(s) 165, 329
BseLI CCNNNNNNNGG 4 cut(s) 140, 251, 487, 569
BseMI GCAATG 1 cut(s) 710
Bsh1236I CGCG 4 cut(s) 390, 639, 646, 653
BshFI GGCC 4 cut(s) 215, 256, 657, 670
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 471
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 140, 251, 487, 569
BsmAI GTCTC 3 cut(s) 389, 523, 676
BsmBI CGTCTC 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 4 cut(s) 215, 256, 657, 670
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 4 cut(s) 22, 359, 454, 493
BspANI GGCC 4 cut(s) 215, 256, 657, 670
BspFNI CGCG 4 cut(s) 390, 639, 646, 653
BspLI GGNNCC 4 cut(s) 145, 234, 255, 537
BspPI GGATC 2 cut(s) 30, 462
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 710
BssMI GATC 4 cut(s) 22, 359, 454, 493
Bst2UI CCWGG 2 cut(s) 289, 667
BstC8I GCNNGC 5 cut(s) 633, 637, 644, 651, 655
BstF5I GGATG 2 cut(s) 165, 329
BstFNI CGCG 4 cut(s) 390, 639, 646, 653
BstKTI GATC 4 cut(s) 25, 362, 457, 496
BstMAI GTCTC 3 cut(s) 389, 523, 676
BstMBI GATC 4 cut(s) 22, 359, 454, 493
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNI CCWGG 2 cut(s) 289, 667
BstSCI CCNGG 2 cut(s) 287, 665
BstUI CGCG 4 cut(s) 390, 639, 646, 653
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 4 cut(s) 215, 256, 657, 670
BtsCI GGATG 2 cut(s) 165, 329
Cac8I GCNNGC 5 cut(s) 633, 637, 644, 651, 655
Cfr13I GGNCC 3 cut(s) 214, 254, 655
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 233
CviAII CATG 6 cut(s) 115, 125, 182, 325, 556, 719
CviQI GTAC 1 cut(s) 233
DpnI GATC 4 cut(s) 24, 361, 456, 495
DpnII GATC 4 cut(s) 22, 359, 454, 493
Eco147I AGGCCT 1 cut(s) 670
Eco32I GATATC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 287, 665
EcoRV GATATC 1 cut(s) 716
EcoT22I ATGCAT 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 676
FaeI CATG 6 cut(s) 118, 128, 185, 328, 559, 722
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FaqI GGGAC 1 cut(s) 306
FatI CATG 6 cut(s) 114, 124, 181, 324, 555, 718
FauI CCCGC 5 cut(s) 560, 566, 581, 613, 646
Fnu4HI GCNGC 2 cut(s) 640, 647
FokI GGATG 2 cut(s) 172, 316
Fsp4HI GCNGC 2 cut(s) 640, 647
FspBI CTAG 3 cut(s) 108, 672, 711
GluI GCNGC 2 cut(s) 640, 647
HaeIII GGCC 4 cut(s) 215, 256, 657, 670
HgaI GACGC 1 cut(s) 65
Hin1II CATG 6 cut(s) 118, 128, 185, 328, 559, 722
HinfI GANTC 2 cut(s) 128, 241
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 3 cut(s) 53, 343, 711
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 75, 258
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 5 cut(s) 124, 350, 373, 415, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 6 cut(s) 118, 128, 185, 328, 559, 722
KpnI GGTACC 1 cut(s) 236
Kzo9I GATC 4 cut(s) 22, 359, 454, 493
LmnI GCTCC 2 cut(s) 143, 541
LpnPI CCDG 7 cut(s) 274, 301, 518, 528, 617, 652, 679
LweI GCATC 2 cut(s) 111, 304
MaeI CTAG 3 cut(s) 108, 672, 711
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 2 cut(s) 129, 340
MalI GATC 4 cut(s) 24, 361, 456, 495
MboI GATC 4 cut(s) 22, 359, 454, 493
MboII GAAGA 5 cut(s) 197, 280, 449, 503, 526
MfeI CAATTG 2 cut(s) 374, 410
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 3 cut(s) 374, 410, 694
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 4 cut(s) 210, 223, 372, 480
Mph1103I ATGCAT 1 cut(s) 126
MseI TTAA 3 cut(s) 137, 566, 599
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 289, 667
MunI CAATTG 2 cut(s) 374, 410
MvaI CCWGG 2 cut(s) 289, 667
MvnI CGCG 4 cut(s) 390, 639, 646, 653
MwoI GCNNNNNNNGC 1 cut(s) 552
NdeII GATC 4 cut(s) 22, 359, 454, 493
NlaIII CATG 6 cut(s) 118, 128, 185, 328, 559, 722
NlaIV GGNNCC 4 cut(s) 145, 234, 255, 537
NmuCI GTSAC 2 cut(s) 129, 340
NsiI ATGCAT 1 cut(s) 126
PceI AGGCCT 1 cut(s) 670
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 2 cut(s) 641, 648
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 287, 665
PspGI CCWGG 2 cut(s) 287, 665
PspN4I GGNNCC 4 cut(s) 145, 234, 255, 537
PspPI GGNCC 3 cut(s) 214, 254, 655
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 3 cut(s) 137, 566, 599
SatI GCNGC 2 cut(s) 640, 647
Sau3AI GATC 4 cut(s) 22, 359, 454, 493
Sau96I GGNCC 3 cut(s) 214, 254, 655
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 289, 667
SduI GDGCHC 1 cut(s) 471
SetI ASST 5 cut(s) 86, 202, 234, 607, 633
SfaNI GCATC 2 cut(s) 111, 304
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 3 cut(s) 374, 410, 694
SseBI AGGCCT 1 cut(s) 670
SspI AATATT 1 cut(s) 369
SspMI CTAG 3 cut(s) 108, 672, 711
StuI AGGCCT 1 cut(s) 670
StyD4I CCNGG 2 cut(s) 287, 665
TaiI ACGT 1 cut(s) 607
TaqI TCGA 1 cut(s) 627
TasI AATT 3 cut(s) 374, 410, 694
TauI GCSGC 2 cut(s) 642, 649
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 3 cut(s) 137, 566, 599
Tru9I TTAA 3 cut(s) 137, 566, 599
TseFI GTSAC 2 cut(s) 129, 340
Tsp45I GTSAC 2 cut(s) 129, 340
TspDTI ATGAA 2 cut(s) 198, 210
Van91I CCANNNNNTGG 1 cut(s) 569
VspI ATTAAT 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 710
XspI CTAG 3 cut(s) 108, 672, 711
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.