Rmu_sc0002147.1_g000007

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002147.1
Physical Location & Seq
Forward (+)
40540 .. 44212
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002147.1_g000007.1.cds

Sequence Viewer

Length: 897 bp
atgagtgtgcgaggcaatacgattgtccaacccgtaggagatccaagtattgacgggacacgttggcagactaatgaagacattcaattgtgcaagtcttggagggctgttagccaagatccggcaaagggtacggaacgaagaaaagatgagctatggttagaggtacgccaacactatgccgaacattgggatggatatgtccgatcattgcaagcttttcaagggaggtggaaaaccttgaaagtcgaactctatgcttggcattgtgcgttaaggcaagcgaaactttggtacaagagtggtgcgaatatgattgatgagctacgtcaagcacaagatttgtggagagctgcgatgaccaaatctaaaggaaaacaaaaaaaaggtgatttcattaatttagaatgttacgagattgttaaggggtttcaacaatttgaagacattccaaaccattcctcttcggctggaggaacctccaggggaggaactgaacggatgcacacacaacaatccgctcctgattctcatgtccagttggacatagatgtagatgaggtaaacgccgatgcaactccaaatctttcggtgaggcctcaaggaaagaaggctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctttgacagccgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaacaacgagattatatacgcttgcaaatggatatgcgaaacgaggcattcaaaattcaagagagggaagagctggcagtgaatagtttcctgccctggtgccctggtgacctggtgactgtgacctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

34.16

Weight (kDa)

8.24

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 864
AccBSI CCGCTC 1 cut(s) 521
AciI CCGC 2 cut(s) 519, 675
AclWI GGATC 2 cut(s) 35, 113
AcsI RAATTY 1 cut(s) 819
AfaI GTAC 3 cut(s) 133, 168, 296
AfiI CCNNNNNNNGG 3 cut(s) 121, 128, 189
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 7 cut(s) 86, 224, 244, 434, 443, 817, 824
AjnI CCWGG 5 cut(s) 482, 860, 868, 876, 890
AluBI AGCT 6 cut(s) 154, 218, 325, 353, 626, 838
AluI AGCT 6 cut(s) 154, 218, 325, 353, 626, 838
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 2 cut(s) 35, 113
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 1 cut(s) 596
ApeKI GCWGC 2 cut(s) 353, 614
ApoI RAATTY 1 cut(s) 819
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 4 cut(s) 81, 447, 627, 851
AsuHPI GGTGA 4 cut(s) 401, 604, 884, 892
BaeGI GKGCMC 1 cut(s) 869
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BanI GGYRCC 1 cut(s) 864
BbsI GAAGAC 2 cut(s) 84, 450
BbvI GCAGC 2 cut(s) 340, 601
BccI CCATC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 5 cut(s) 484, 862, 870, 878, 892
BcoDI GTCTC 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 3 cut(s) 354, 615, 675
BlsI GCNGC 3 cut(s) 355, 616, 676
Bme1390I CCNGG 5 cut(s) 484, 862, 870, 878, 892
BmiI GGNNCC 2 cut(s) 478, 866
BmrFI CCNGG 5 cut(s) 484, 862, 870, 878, 892
BmsI GCATC 3 cut(s) 492, 562, 656
BpiI GAAGAC 2 cut(s) 84, 450
BpmI CTGGAG 2 cut(s) 466, 492
BpuEI CTTGAG 1 cut(s) 585
BsaJI CCNNGG 4 cut(s) 483, 720, 860, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 128, 189
Bse1I ACTGG 2 cut(s) 538, 660
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 5 cut(s) 484, 862, 870, 878, 892
BseDI CCNNGG 4 cut(s) 483, 720, 860, 868
BseGI GGATG 2 cut(s) 199, 507
BseLI CCNNNNNNNGG 3 cut(s) 121, 128, 189
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 538, 660
BseSI GKGCMC 1 cut(s) 869
BseXI GCAGC 2 cut(s) 340, 601
BshFI GGCC 1 cut(s) 598
BshNI GGYRCC 1 cut(s) 864
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 3 cut(s) 121, 128, 189
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 812
BsnI GGCC 1 cut(s) 598
Bsp1286I GDGCHC 1 cut(s) 869
Bsp143I GATC 3 cut(s) 40, 118, 206
BspACI CCGC 2 cut(s) 519, 675
BspANI GGCC 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 478, 866
BspPI GGATC 2 cut(s) 35, 113
BspQI GCTCTTC 2 cut(s) 633, 828
BspT107I GGYRCC 1 cut(s) 864
BsrBI CCGCTC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 2 cut(s) 538, 660
BssECI CCNNGG 4 cut(s) 483, 720, 860, 868
BssMI GATC 3 cut(s) 40, 118, 206
BssT1I CCWWGG 1 cut(s) 720
Bst2UI CCWGG 5 cut(s) 484, 862, 870, 878, 892
Bst4CI ACNGT 1 cut(s) 886
Bst6I CTCTTC 3 cut(s) 469, 633, 828
BstC8I GCNNGC 4 cut(s) 216, 282, 788, 840
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 2 cut(s) 199, 507
BstKTI GATC 3 cut(s) 43, 121, 209
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 3 cut(s) 40, 118, 206
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 5 cut(s) 484, 862, 870, 878, 892
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 5 cut(s) 482, 860, 868, 876, 890
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 869
BstV1I GCAGC 2 cut(s) 340, 601
BstV2I GAAGAC 2 cut(s) 84, 450
BstX2I RGATCY 2 cut(s) 40, 118
BstYI RGATCY 2 cut(s) 40, 118
BsuRI GGCC 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 199, 507
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 1 cut(s) 849
Cac8I GCNNGC 4 cut(s) 216, 282, 788, 840
CaiI CAGNNNCTG 1 cut(s) 677
CsiI ACCWGGT 2 cut(s) 876, 890
Csp6I GTAC 3 cut(s) 132, 167, 295
CspCI CAANNNNNGTGG 4 cut(s) 212, 247, 326, 361
CviAII CATG 1 cut(s) 533
CviQI GTAC 3 cut(s) 132, 167, 295
DpnI GATC 3 cut(s) 42, 120, 208
DpnII GATC 3 cut(s) 40, 118, 206
Eam1104I CTCTTC 3 cut(s) 469, 633, 828
EarI CTCTTC 3 cut(s) 469, 633, 828
Eco130I CCWWGG 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 598
Eco91I GGTNACC 1 cut(s) 872
EcoO65I GGTNACC 1 cut(s) 872
EcoRII CCWGG 5 cut(s) 482, 860, 868, 876, 890
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 1 cut(s) 536
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 612, 644
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 354, 615, 675
FokI GGATG 2 cut(s) 206, 514
Fsp4HI GCNGC 3 cut(s) 354, 615, 675
GluI GCNGC 3 cut(s) 354, 615, 675
GsuI CTGGAG 2 cut(s) 466, 492
HaeIII GGCC 1 cut(s) 598
HapII CCGG 1 cut(s) 122
Hin1II CATG 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 527, 656
HpaII CCGG 1 cut(s) 122
HphI GGTGA 4 cut(s) 401, 604, 884, 892
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 2 cut(s) 206, 633
Hpy188III TCNNGA 2 cut(s) 524, 824
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 1 cut(s) 886
HpyCH4IV ACGT 3 cut(s) 61, 328, 730
HpyCH4V TGCA 5 cut(s) 93, 214, 505, 575, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpySE526I ACGT 3 cut(s) 61, 328, 730
Hsp92II CATG 1 cut(s) 536
Kzo9I GATC 3 cut(s) 40, 118, 206
LguI GCTCTTC 2 cut(s) 633, 828
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 340, 601
LweI GCATC 3 cut(s) 492, 562, 656
MabI ACCWGGT 2 cut(s) 876, 890
MaeII ACGT 3 cut(s) 61, 328, 730
MaeIII GTNAC 5 cut(s) 410, 758, 872, 880, 886
MalI GATC 3 cut(s) 42, 120, 208
MbiI CCGCTC 1 cut(s) 521
MboI GATC 3 cut(s) 40, 118, 206
MboII GAAGA 6 cut(s) 89, 153, 455, 456, 620, 845
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 2 cut(s) 40, 118
MhlI GDGCHC 1 cut(s) 869
MluCI AATT 4 cut(s) 86, 400, 437, 819
MmeI TCCRAC 2 cut(s) 52, 522
MroXI GAANNNNTTC 4 cut(s) 81, 447, 627, 851
MseI TTAA 3 cut(s) 275, 399, 423
MslI CAYNNNNRTG 2 cut(s) 192, 756
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 5 cut(s) 484, 862, 870, 878, 892
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 812
MvaI CCWGG 5 cut(s) 484, 862, 870, 878, 892
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeII GATC 3 cut(s) 40, 118, 206
NlaIII CATG 1 cut(s) 536
NlaIV GGNNCC 2 cut(s) 478, 866
NmuCI GTSAC 4 cut(s) 758, 872, 880, 886
PceI AGGCCT 1 cut(s) 598
PciSI GCTCTTC 2 cut(s) 633, 828
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PctI GAATGC 1 cut(s) 812
PdmI GAANNNNTTC 4 cut(s) 81, 447, 627, 851
PfeI GAWTC 2 cut(s) 527, 656
PkrI GCNGC 3 cut(s) 355, 616, 676
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 5 cut(s) 482, 860, 868, 876, 890
PspEI GGTNACC 1 cut(s) 872
PspGI CCWGG 5 cut(s) 482, 860, 868, 876, 890
PspN4I GGNNCC 2 cut(s) 478, 866
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 40, 118
RsaI GTAC 3 cut(s) 133, 168, 296
RsaNI GTAC 3 cut(s) 132, 167, 295
RseI CAYNNNNRTG 2 cut(s) 192, 756
SapI GCTCTTC 2 cut(s) 633, 828
SaqAI TTAA 3 cut(s) 275, 399, 423
SatI GCNGC 3 cut(s) 354, 615, 675
Sau3AI GATC 3 cut(s) 40, 118, 206
ScrFI CCNGG 5 cut(s) 484, 862, 870, 878, 892
SduI GDGCHC 1 cut(s) 869
SexAI ACCWGGT 2 cut(s) 876, 890
SfaNI GCATC 3 cut(s) 492, 562, 656
SfcI CTRYAG 1 cut(s) 687
SmiMI CAYNNNNRTG 2 cut(s) 192, 756
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
Sse9I AATT 4 cut(s) 86, 400, 437, 819
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 2 cut(s) 519, 675
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 5 cut(s) 482, 860, 868, 876, 890
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 1 cut(s) 886
TaiI ACGT 3 cut(s) 64, 331, 733
TaqI TCGA 2 cut(s) 249, 748
TasI AATT 4 cut(s) 86, 400, 437, 819
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 2 cut(s) 527, 656
Tru1I TTAA 3 cut(s) 275, 399, 423
Tru9I TTAA 3 cut(s) 275, 399, 423
TscAI CASTG 1 cut(s) 849
TseFI GTSAC 4 cut(s) 758, 872, 880, 886
TseI GCWGC 2 cut(s) 353, 614
Tsp45I GTSAC 4 cut(s) 758, 872, 880, 886
TspDTI ATGAA 2 cut(s) 90, 385
TspGWI ACGGA 3 cut(s) 149, 514, 746
TspRI CASTG 1 cut(s) 849
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 1 cut(s) 819
XmnI GAANNNNTTC 4 cut(s) 81, 447, 627, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.