Rmu_sc0000455.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000455.1
OG0000127
Physical Location & Seq
Forward (+)
14777 .. 15567
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000455.1_g000003.1.cds

Sequence Viewer

Length: 603 bp
atgcgcacacaaccaattcctggaaattctcccatcaacttggacatggatgtagatgaggtaattgcaggtgaaactgcagatcctaacgtcaggcctcaaggaaggaaggctgcgaaagaagcaattcggaaaggaaagaaggtagcaaaagatcaaagtcttttgtcaagcactctcgagaatatagcgaccaaccaaatagagacaaccgcgggcaagaaaaaactcgatgacgaattcgctcgaaatctccaagaggaagataaaagaacatgtatcctcttgcaaatcgaaatgcgaaaagagcaactcctattccaagagagaaaacaaaagaaaatagcggagcaagaagatcttggtgagcagacgccaccttctatgggtggatactatccgcaacccaattttggtagtgcattcccacaaccaaattttggtggtgcatacccacaacttccttacccgggtggattcccaccacctcccttcaccggtgatttcccacaacccccttaccccggtggatactatccgcaaccaccttacccccgggggatatcctacacaaccacaattttcacctttctctacgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.31

Weight (kDa)

5.67

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 59
AccB7I CCANNNNNTGG 2 cut(s) 20, 440
AccII CGCG 1 cut(s) 215
AciI CCGC 5 cut(s) 213, 215, 347, 401, 539
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 3 cut(s) 25, 239, 436
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 7 cut(s) 20, 386, 413, 440, 470, 497, 524
AflIII ACRYGT 1 cut(s) 275
AgeI ACCGGT 1 cut(s) 497
AjnI CCWGG 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 3 cut(s) 179, 469, 555
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 3 cut(s) 25, 239, 436
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 126
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 5 cut(s) 470, 471, 525, 556, 557
AsuHPI GGTGA 5 cut(s) 83, 377, 487, 512, 577
AvaI CYCGRG 3 cut(s) 179, 469, 555
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 21
BciVI GTATCC 3 cut(s) 290, 386, 524
BcnI CCSGG 5 cut(s) 470, 471, 525, 556, 557
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 59
BfuI GTATCC 3 cut(s) 290, 386, 524
BglII AGATCT 1 cut(s) 358
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 6 cut(s) 21, 470, 471, 525, 556, 557
BmeT110I CYCGRG 3 cut(s) 179, 469, 555
BmrFI CCNGG 6 cut(s) 21, 470, 471, 525, 556, 557
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 5 cut(s) 470, 471, 525, 556, 557
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 6 cut(s) 213, 469, 523, 554, 555, 556
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 386, 413, 440, 470, 497, 524
Bse118I RCCGGY 1 cut(s) 497
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 6 cut(s) 213, 469, 523, 554, 555, 556
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 7 cut(s) 20, 386, 413, 440, 470, 497, 524
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 497
BsiHKCI CYCGRG 3 cut(s) 179, 469, 555
BsiSI CCGG 4 cut(s) 470, 498, 525, 556
BslI CCNNNNNNNGG 7 cut(s) 20, 386, 413, 440, 470, 497, 524
BsmAI GTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 97
BsoBI CYCGRG 3 cut(s) 179, 469, 555
Bsp143I GATC 3 cut(s) 82, 154, 358
BspACI CCGC 5 cut(s) 213, 215, 347, 401, 539
BspANI GGCC 1 cut(s) 97
BspFNI CGCG 1 cut(s) 215
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 6 cut(s) 213, 469, 523, 554, 555, 556
BssMI GATC 3 cut(s) 82, 154, 358
BssNI GRCGYC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 85, 157, 361
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 3 cut(s) 82, 154, 358
BstMWI GCNNNNNNNGC 2 cut(s) 122, 307
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 6 cut(s) 19, 468, 469, 523, 554, 555
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 82, 358
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 2 cut(s) 82, 358
BsuI GTATCC 3 cut(s) 290, 386, 524
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 497
Cfr42I CCGCGG 1 cut(s) 216
Cfr9I CCCGGG 2 cut(s) 469, 555
CseI GACGC 1 cut(s) 382
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 2 cut(s) 46, 276
CviJI RGCY 2 cut(s) 97, 113
CviKI_1 RGCY 2 cut(s) 97, 113
DpnI GATC 3 cut(s) 84, 156, 360
DpnII GATC 3 cut(s) 82, 154, 358
Eco147I AGGCCT 1 cut(s) 97
Eco32I GATATC 1 cut(s) 564
Eco88I CYCGRG 3 cut(s) 179, 469, 555
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 19
EcoRV GATATC 1 cut(s) 564
FaeI CATG 2 cut(s) 49, 279
FaiI YATR 5 cut(s) 47, 188, 277, 386, 451
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 2 cut(s) 45, 275
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 114
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 97
HapII CCGG 4 cut(s) 470, 498, 525, 556
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 2 cut(s) 49, 279
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 477
HpaII CCGG 4 cut(s) 470, 498, 525, 556
HphI GGTGA 5 cut(s) 83, 377, 487, 512, 577
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 179, 181
HpyAV CCTTC 5 cut(s) 99, 103, 136, 390, 502
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 68, 80, 289, 422, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 307
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 49, 279
HspAI GCGC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 3 cut(s) 82, 154, 358
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 6, 33, 54, 79, 483, 511, 538, 569
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 84, 156, 360
MboI GATC 3 cut(s) 82, 154, 358
MboII GAAGA 2 cut(s) 275, 368
MflI RGATCY 2 cut(s) 82, 358
MluCI AATT 8 cut(s) 15, 25, 63, 126, 239, 409, 436, 579
MnlI CCTC 5 cut(s) 52, 108, 253, 293, 498
MroXI GAANNNNTTC 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 4 cut(s) 470, 498, 525, 556
MspR9I CCNGG 6 cut(s) 21, 470, 471, 525, 556, 557
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 122, 307
NciI CCSGG 5 cut(s) 470, 471, 525, 556, 557
NdeII GATC 3 cut(s) 82, 154, 358
NlaIII CATG 2 cut(s) 49, 279
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 179
PaqCI CACCTGC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 97
PciI ACATGT 1 cut(s) 275
PctI GAATGC 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 477
PflMI CCANNNNNTGG 2 cut(s) 20, 440
PfoI TCCNGGA 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 2 cut(s) 82, 358
SacII CCGCGG 1 cut(s) 216
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 82, 154, 358
ScrFI CCNGG 6 cut(s) 21, 470, 471, 525, 556, 557
SetI ASST 8 cut(s) 63, 73, 93, 147, 382, 490, 550, 590
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 179
Sfr303I CCGCGG 1 cut(s) 216
SgrAI CRCCGGYG 1 cut(s) 497
SgrBI CCGCGG 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 179
SmaI CCCGGG 2 cut(s) 471, 557
SmlI CTYRAG 2 cut(s) 99, 179
SmoI CTYRAG 2 cut(s) 99, 179
Sse9I AATT 8 cut(s) 15, 25, 63, 126, 239, 409, 436, 579
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 5 cut(s) 213, 215, 347, 401, 539
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 6 cut(s) 19, 468, 469, 523, 554, 555
TaiI ACGT 1 cut(s) 93
TaqI TCGA 4 cut(s) 180, 231, 247, 294
TasI AATT 8 cut(s) 15, 25, 63, 126, 239, 409, 436, 579
TfiI GAWTC 1 cut(s) 477
TseI GCWGC 1 cut(s) 113
TspMI CCCGGG 2 cut(s) 469, 555
Van91I CCANNNNNTGG 2 cut(s) 20, 440
XapI RAATTY 3 cut(s) 25, 239, 436
XceI RCATGY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 179
XmaI CCCGGG 2 cut(s) 469, 555
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.