Rmu_sc0002548.1_g000007

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002548.1
OG0000127
Physical Location & Seq
Reverse (-)
19309 .. 20138
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002548.1_g000007.1.cds

Sequence Viewer

Length: 618 bp
atgactggggaagacgggggaagaagggggaaggaaggctgccaactcggcccgatgattgccgtgaagcgacagcagcaacaggcggtccaggctaacgcgctgaaggcagcgactgggtctccaacggacgacgcgtggcgctgcaaatcccaggcgagtaactacagtctcttgtcgtgtagtgcatctgctttaggccagcaggtgccacgtgctgcagacccgttgggtaattttgaaattgctgccaaacgctctcattatccatatttttcattatccactatggccgaacaaatgggagatcaaaatgaagatgaggttacccaagacaaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaagttgtaggccaatgtcctgctgtgggcacaaatcagaaaaaaaatgacttatggttgcgcgtgaagcgacactttgacgcaaattggccgaagagccgatcagcccaatctttgcagggaaggtggaaaattttgaagatagaactctttgagtggcattgtgcattaaggcaagcgaaacattggtacaagagcggttcgaatgcggttgatgaggtatgtatttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

205

Amino Acids

23.06

Weight (kDa)

8.9

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 582
AccII CGCG 3 cut(s) 101, 137, 447
AciI CCGC 3 cut(s) 86, 582, 593
AcoI YGGCCR 2 cut(s) 291, 473
AcsI RAATTY 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 125
AcvI CACGTG 1 cut(s) 215
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 242, 368, 523
AjnI CCWGG 2 cut(s) 90, 153
Alw26I GTCTC 2 cut(s) 126, 176
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 5 cut(s) 49, 199, 291, 394, 473
ApeKI GCWGC 6 cut(s) 39, 76, 110, 144, 218, 248
ApoI RAATTY 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 3 cut(s) 103, 144, 447
AspS9I GGNCC 2 cut(s) 50, 88
AsuII TTCGAA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 208
BbrPI CACGTG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 6 cut(s) 26, 88, 122, 131, 205, 235
BccI CCATC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 92, 155
BcoDI GTCTC 2 cut(s) 126, 176
BfmI CTRYAG 2 cut(s) 166, 219
BfoI RGCGCY 1 cut(s) 145
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 6 cut(s) 40, 77, 111, 145, 219, 249
BlsI GCNGC 6 cut(s) 41, 78, 112, 146, 220, 250
Bme1390I CCNGG 2 cut(s) 92, 155
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 50, 88
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 92, 155
BmrI ACTGGG 2 cut(s) 15, 126
BmsI GCATC 1 cut(s) 197
BmuI ACTGGG 2 cut(s) 15, 126
BpiI GAAGAC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 587
BsaAI YACGTR 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 10, 121
BseBI CCWGG 2 cut(s) 92, 155
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 410
BseNI ACTGG 2 cut(s) 10, 121
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 6 cut(s) 26, 88, 122, 131, 205, 235
Bsh1236I CGCG 3 cut(s) 101, 137, 447
BshFI GGCC 5 cut(s) 51, 201, 293, 396, 475
BshNI GGYRCC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 2 cut(s) 126, 176
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 5 cut(s) 51, 201, 293, 396, 475
Bso31I GGTCTC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 2 cut(s) 307, 485
BspACI CCGC 3 cut(s) 86, 582, 593
BspANI GGCC 5 cut(s) 51, 201, 293, 396, 475
BspFNI CGCG 3 cut(s) 101, 137, 447
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 473
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 582
BsrI ACTGG 2 cut(s) 10, 121
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 307, 485
Bst2UI CCWGG 2 cut(s) 92, 155
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 473
BstBAI YACGTR 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 203, 561
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 3 cut(s) 101, 137, 447
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 3 cut(s) 103, 144, 447
BstKTI GATC 2 cut(s) 310, 488
BstMAI GTCTC 2 cut(s) 126, 176
BstMBI GATC 2 cut(s) 307, 485
BstMWI GCNNNNNNNGC 5 cut(s) 48, 76, 92, 107, 451
BstNI CCWGG 2 cut(s) 92, 155
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 90, 153
BstSFI CTRYAG 2 cut(s) 166, 219
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 3 cut(s) 101, 137, 447
BstV1I GCAGC 6 cut(s) 26, 88, 122, 131, 205, 235
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 5 cut(s) 51, 201, 293, 396, 475
BtsCI GGATG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 203, 561
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 3 cut(s) 103, 144, 447
Cfr13I GGNCC 2 cut(s) 50, 88
CseI GACGC 2 cut(s) 143, 473
Csp6I GTAC 1 cut(s) 574
CviJI RGCY 9 cut(s) 39, 51, 95, 201, 293, 396, 475, 483, 491
CviKI_1 RGCY 9 cut(s) 39, 51, 95, 201, 293, 396, 475, 483, 491
CviQI GTAC 1 cut(s) 574
DpnI GATC 2 cut(s) 309, 487
DpnII GATC 2 cut(s) 307, 485
EaeI YGGCCR 2 cut(s) 291, 473
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 125
Eco72I CACGTG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 90, 153
FaiI YATR 4 cut(s) 271, 290, 439, 607
FalI AAGNNNNNCTT 2 cut(s) 443, 475
Fnu4HI GCNGC 6 cut(s) 40, 77, 111, 145, 219, 249
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 6 cut(s) 40, 77, 111, 145, 219, 249
GlaI GCGC 3 cut(s) 102, 143, 446
GluI GCNGC 6 cut(s) 40, 77, 111, 145, 219, 249
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 5 cut(s) 51, 201, 293, 396, 475
HgaI GACGC 2 cut(s) 143, 473
HhaI GCGC 3 cut(s) 103, 144, 447
Hin6I GCGC 3 cut(s) 101, 142, 445
HinP1I GCGC 3 cut(s) 101, 142, 445
Hpy188I TCNGA 1 cut(s) 423
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 5 cut(s) 18, 25, 29, 100, 501
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 6 cut(s) 147, 188, 221, 375, 502, 551
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 76, 92, 107, 451
HpySE526I ACGT 1 cut(s) 214
HspAI GCGC 3 cut(s) 101, 142, 445
Kzo9I GATC 2 cut(s) 307, 485
LguI GCTCTTC 1 cut(s) 473
Lsp1109I GCAGC 6 cut(s) 26, 88, 122, 131, 205, 235
LweI GCATC 1 cut(s) 197
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 161, 325
MalI GATC 2 cut(s) 309, 487
MbiI CCGCTC 1 cut(s) 582
MboI GATC 2 cut(s) 307, 485
MboII GAAGA 6 cut(s) 23, 33, 329, 371, 490, 535
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 5 cut(s) 235, 243, 368, 469, 516
MluI ACGCGT 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 3 cut(s) 316, 349, 595
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 554
MspR9I CCNGG 2 cut(s) 92, 155
MunI CAATTG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 2 cut(s) 92, 155
MvnI CGCG 3 cut(s) 101, 137, 447
MwoI GCNNNNNNNGC 5 cut(s) 48, 76, 92, 107, 451
NdeII GATC 2 cut(s) 307, 485
NlaIV GGNNCC 1 cut(s) 210
NmeAIII GCCGAG 1 cut(s) 27
NspV TTCGAA 1 cut(s) 587
PaqCI CACCTGC 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 363
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 6 cut(s) 41, 78, 112, 146, 220, 250
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
Ppu21I YACGTR 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 90, 153
PspCI CACGTG 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 2 cut(s) 90, 153
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 50, 88
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 6 cut(s) 40, 77, 111, 145, 219, 249
Sau3AI GATC 2 cut(s) 307, 485
Sau96I GGNCC 2 cut(s) 50, 88
ScrFI CCNGG 2 cut(s) 92, 155
SduI GDGCHC 1 cut(s) 416
SetI ASST 5 cut(s) 210, 217, 327, 512, 606
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 2 cut(s) 166, 219
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 1 cut(s) 88
Sse9I AATT 5 cut(s) 235, 243, 368, 469, 516
SsiI CCGC 3 cut(s) 86, 582, 593
StyD4I CCNGG 2 cut(s) 90, 153
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 587
TasI AATT 5 cut(s) 235, 243, 368, 469, 516
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TseI GCWGC 6 cut(s) 39, 76, 110, 144, 218, 248
TspDTI ATGAA 2 cut(s) 267, 330
TspGWI ACGGA 2 cut(s) 143, 365
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.