Rmu_sc0004101.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004101.1
OG0000127
Physical Location & Seq
Forward (+)
14833 .. 16881
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004101.1_g000004.1.cds

Sequence Viewer

Length: 1032 bp
atgaacagtgtcgcgggcttttgtatatttagaatttcaggttgtgtaaggctagattgtggtggttgcagtgctattgatggtggtgattttagtgataatgttcttatggttcagggtgttggcagttttgatgaaggtgatgctagtgaagaaaacgtggctgacgttagccacggacacgcagagagagacgtggaggagaggcagtgtggaggacaaggacaaatgaggaagcgccagctagcagactgcgtcagcatcaactttttttcgcctagcgacagtgagtgggacggaggaggacacgtggaatgtatccgttgctctcatcatccaaatttgtttatatccaatatggccgaacaaaggggaaacacacgtctagtggccggacaacagggagatcaaagtgaagatgataatatcgaatccgggaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaagctggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattaaggcaagctcgtaattggtataagagtcgttcgaatgcggttgatgagcttgatgaagcacataaattggggaagagaaaagagaagaccaaaagacacaattttcagagttttgattggtacgctcttgtggagggttttgcacaatttaaagacatctctagccatacattcggaggaacatcaaatgaaggaagtcaacatacgcacacacaaccaattgctgaaaattctcctatcaacttggacatggatgtagatgaggtaattgccggtgaaactgtagatcctaatgtgaggcctcaaggaaggaagactgtgaaaaaaaaaacaattcagaaaggaaagaaggcagcaaaggatcaaagtcccctatcaaccgatgtcgagagtatagcgagcatccaaaaagaggcaacagcttgcaagaaaaaactcgatgaggaattcgctcgaagtctccaagaggaaaatcaacgagcttgtatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.32

Weight (kDa)

5.55

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 14, 578
AclWI GGATC 2 cut(s) 821, 909
AcoI YGGCCR 2 cut(s) 360, 390
AcsI RAATTY 5 cut(s) 33, 340, 501, 769, 986
AcvI CACGTG 1 cut(s) 310
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 2 cut(s) 369, 952
AflIII ACRYGT 2 cut(s) 307, 380
AgsI TTSAA 3 cut(s) 467, 508, 515
AjiI CACGTC 2 cut(s) 196, 383
AluBI AGCT 6 cut(s) 244, 488, 548, 589, 962, 1022
AluI AGCT 6 cut(s) 244, 488, 548, 589, 962, 1022
Alw26I GTCTC 2 cut(s) 186, 1004
AlwI GGATC 2 cut(s) 821, 909
AoxI GGCC 3 cut(s) 360, 390, 839
ApeKI GCWGC 1 cut(s) 893
ApoI RAATTY 5 cut(s) 33, 340, 501, 769, 986
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 3 cut(s) 98, 152, 827
AsuII TTCGAA 1 cut(s) 572
AsuNHI GCTAGC 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 727, 759
BbrPI CACGTG 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 632, 860
BbvI GCAGC 1 cut(s) 905
BccI CCATC 2 cut(s) 74, 438
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 186, 1004
BfaI CTAG 6 cut(s) 53, 147, 245, 279, 386, 702
BfmI CTRYAG 1 cut(s) 822
BfoI RGCGCY 1 cut(s) 241
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 1 cut(s) 894
BlsI GCNGC 1 cut(s) 895
Bme1390I CCNGG 1 cut(s) 436
BmgBI CACGTC 2 cut(s) 196, 383
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 3 cut(s) 133, 270, 951
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 632, 860
Bpu14I TTCGAA 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 952
Bse118I RCCGGY 1 cut(s) 812
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 4 cut(s) 334, 457, 799, 942
BseLI CCNNNNNNNGG 2 cut(s) 369, 952
BseRI GAGGAG 3 cut(s) 215, 315, 454
BseXI GCAGC 1 cut(s) 905
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 362, 392, 841
BsiSI CCGG 3 cut(s) 393, 435, 813
BslFI GGGAC 2 cut(s) 308, 894
BslI CCNNNNNNNGG 2 cut(s) 369, 952
BsmAI GTCTC 2 cut(s) 186, 1004
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 308, 894
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 3 cut(s) 362, 392, 841
Bsp119I TTCGAA 1 cut(s) 572
Bsp143I GATC 3 cut(s) 406, 826, 901
BspACI CCGC 2 cut(s) 14, 578
BspANI GGCC 3 cut(s) 362, 392, 841
BspFNI CGCG 1 cut(s) 14
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 821, 909
BspT104I TTCGAA 1 cut(s) 572
BsrFI RCCGGY 1 cut(s) 812
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 3 cut(s) 406, 826, 901
Bst4CI ACNGT 4 cut(s) 8, 287, 823, 859
Bst6I CTCTTC 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 6 cut(s) 16, 242, 246, 546, 940, 964
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 4 cut(s) 334, 457, 799, 942
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 3 cut(s) 409, 829, 904
BstMAI GTCTC 2 cut(s) 186, 1004
BstMBI GATC 3 cut(s) 406, 826, 901
BstSCI CCNGG 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 905
BstV2I GAAGAC 2 cut(s) 632, 860
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 3 cut(s) 362, 392, 841
BtgI CCRYGG 1 cut(s) 175
BtrI CACGTC 2 cut(s) 196, 383
BtsCI GGATG 4 cut(s) 334, 457, 799, 942
BtsI GCAGTG 2 cut(s) 76, 215
BtsIMutI CAGTG 4 cut(s) 13, 76, 215, 292
Cac8I GCNNGC 6 cut(s) 16, 242, 246, 546, 940, 964
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 812
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 661
CviAII CATG 1 cut(s) 790
CviQI GTAC 1 cut(s) 661
DpnI GATC 3 cut(s) 408, 828, 903
DpnII GATC 3 cut(s) 406, 826, 901
DraI TTTAAA 1 cut(s) 691
EaeI YGGCCR 2 cut(s) 360, 390
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 841
Eco72I CACGTG 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 986
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 793
FaqI GGGAC 2 cut(s) 308, 894
FatI CATG 1 cut(s) 789
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 894
FokI GGATG 4 cut(s) 321, 464, 806, 929
Fsp4HI GCNGC 1 cut(s) 894
FspBI CTAG 6 cut(s) 53, 147, 245, 279, 386, 702
GlaI GCGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 894
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 3 cut(s) 362, 392, 841
HapII CCGG 3 cut(s) 393, 435, 813
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 793
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 740
HindII GTYRAC 1 cut(s) 740
HinfI GANTC 2 cut(s) 431, 565
HpaII CCGG 3 cut(s) 393, 435, 813
HphI GGTGA 3 cut(s) 98, 152, 827
Hpy166II GTNNAC 1 cut(s) 740
Hpy188I TCNGA 4 cut(s) 648, 716, 879, 1031
Hpy188III TCNNGA 1 cut(s) 928
Hpy8I GTNNAC 1 cut(s) 740
HpyAV CCTTC 6 cut(s) 131, 486, 502, 725, 843, 883
HpyCH4III ACNGT 4 cut(s) 8, 287, 823, 859
HpyCH4IV ACGT 5 cut(s) 159, 168, 195, 309, 382
HpyCH4V TGCA 5 cut(s) 69, 474, 536, 683, 966
HpySE526I ACGT 5 cut(s) 159, 168, 195, 309, 382
Hsp92II CATG 1 cut(s) 793
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 406, 826, 901
LpnPI CCDG 8 cut(s) 24, 101, 254, 386, 406, 448, 474, 826
Lsp1109I GCAGC 1 cut(s) 905
LweI GCATC 3 cut(s) 133, 270, 951
MaeI CTAG 6 cut(s) 53, 147, 245, 279, 386, 702
MaeII ACGT 5 cut(s) 159, 168, 195, 309, 382
MalI GATC 3 cut(s) 408, 828, 903
MboI GATC 3 cut(s) 406, 826, 901
MboII GAAGA 6 cut(s) 164, 428, 470, 625, 637, 865
MfeI CAATTG 2 cut(s) 467, 759
MflI RGATCY 1 cut(s) 826
MlyI GAGTC 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 2 cut(s) 539, 690
MspI CCGG 3 cut(s) 393, 435, 813
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 2 cut(s) 467, 759
Mva1269I GAATGC 1 cut(s) 580
MvnI CGCG 1 cut(s) 14
NciI CCSGG 1 cut(s) 436
NdeII GATC 3 cut(s) 406, 826, 901
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 1 cut(s) 793
NspV TTCGAA 1 cut(s) 572
PceI AGGCCT 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 1 cut(s) 895
PleI GAGTC 1 cut(s) 573
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
PpsI GAGTC 1 cut(s) 573
Ppu21I YACGTR 1 cut(s) 310
PspCI CACGTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 826
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
SaqAI TTAA 2 cut(s) 539, 690
SatI GCNGC 1 cut(s) 894
Sau3AI GATC 3 cut(s) 406, 826, 901
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 436
SfaNI GCATC 3 cut(s) 133, 270, 951
SfcI CTRYAG 1 cut(s) 822
SfuI TTCGAA 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SseBI AGGCCT 1 cut(s) 841
SsiI CCGC 2 cut(s) 14, 578
SspMI CTAG 6 cut(s) 53, 147, 245, 279, 386, 702
StuI AGGCCT 1 cut(s) 841
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 4 cut(s) 8, 287, 823, 859
TaiI ACGT 5 cut(s) 162, 171, 198, 312, 385
TaqI TCGA 5 cut(s) 429, 572, 927, 978, 994
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 539, 690
Tru9I TTAA 2 cut(s) 539, 690
TscAI CASTG 4 cut(s) 13, 76, 215, 292
TseI GCWGC 1 cut(s) 893
TspDTI ATGAA 4 cut(s) 17, 150, 609, 744
TspGWI ACGGA 4 cut(s) 192, 311, 312, 464
TspRI CASTG 4 cut(s) 13, 76, 215, 292
Tth111I GACNNNGTC 1 cut(s) 254
XapI RAATTY 5 cut(s) 33, 340, 501, 769, 986
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 6 cut(s) 53, 147, 245, 279, 386, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.