RchiOBHm_Chr5g0011791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000127
Physical Location & Seq
Forward (+)
7847657 .. 7849473
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29240

Sequence Viewer

Length: 1050 bp
ATGAAGAGAAAAAAGAAGCCAAAAAAACACAATTTTCAGAGTTTTGCTAGTTACGCTGTTGTGGAGGGTTTTCAACAATTTAAAGATATTCCTAGTCATACATCTGGAGGAACATCAAATGAAGGAAATCAACATACGCCTACACAACCAATTCCTGGAAATTCTCCCATCAACTTGGACATGGATGTAGATGAGGTAATTGCAGGTGAAACTGCAAATCCCAGTATGAGGCCTCAAGGAAGGAAGGCTGCCAAAGAAGCAATACGGAAAGGAAAGAAGGCAACGAAAGATCAAAGTCCTTTGTCAAACAGTCTCGAGAGTATAGCGAACAACCAAATAGAGGCAACCAAGGGCAAGAAAAAACTCAATGACGAATTCGCTCGAAGTCTCCAAGAGGAAGAGAAAAGAGCATGTATCCTCTTGCAAATCGAAATACGAAAAGAGCAACTCCTATTTCAAGAAAGGCAAGATCGAATTATAGAGAGAGAAGAGCGAAATAAAGAGAGGGAAGAGCGTATTATGGAGATTGATACAAGTAAAATGACGCCAAATAAAAAGCGTTATTGGTCAAGAAAACAAAAGAAGATAGCGGAGAAAGAAGATCTTGACGAGCAGCCGCCACCTTTTATGAGTGGATACTATCCGCAACCAAATTTTGGTGGTGCATACCCACAACCTCCTTACCCTGGTGCATACCCACAAGCACTTTACCCCGGCGCATACCCACAACCACCTTACCCCGGTGCATACCCACAACCACCTTGCCCCGATGGATTCCCACAATCTCCCTTAACCGGTGGATTCCCACCACCTCCCTTCACCGGTGGATTCCCACAACCCTCTGCTTCTATGGGTGGATTCCCACAACCCTCTGCTTCTATAGGTGGATACTATCCGCAATCACCTTACCCCGGGGGATATCCTACACAACCACAATTTTCACCTTTCTCTACGGATGATTCCACCAACCCTAACCCTCATGATGACCATTCAAACGCAAATTGGATGTCTAGAGAAAATGAGGATTATGATTATGATTTGAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

39.21

Weight (kDa)

6.56

Isoelectric Point (pI)

72.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 29 - 196 1.3e-07 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccB7I CCANNNNNTGG 2 cut(s) 155, 656
AciI CCGC 4 cut(s) 590, 617, 644, 896
AcsI RAATTY 3 cut(s) 160, 374, 652
AcyI GRCGYC 1 cut(s) 545
AfiI CCNNNNNNNGG 9 cut(s) 155, 228, 340, 656, 686, 740, 794, 821, 911
AgeI ACCGGT 2 cut(s) 794, 821
AgsI TTSAA 4 cut(s) 74, 458, 993, 1042
AjnI CCWGG 2 cut(s) 154, 685
Alw26I GTCTC 2 cut(s) 317, 392
Ama87I CYCGRG 2 cut(s) 314, 911
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 248, 613
ApoI RAATTY 3 cut(s) 160, 374, 652
ArsI GACNNNNNNTTYG 2 cut(s) 992, 1024
AsiGI ACCGGT 2 cut(s) 794, 821
AspLEI GCGC 1 cut(s) 719
AsuC2I CCSGG 4 cut(s) 714, 741, 912, 913
AsuHPI GGTGA 4 cut(s) 218, 811, 894, 933
AvaI CYCGRG 2 cut(s) 314, 911
BbvI GCAGC 2 cut(s) 235, 625
BccI CCATC 2 cut(s) 176, 764
BciT130I CCWGG 2 cut(s) 156, 687
BciVI GTATCC 3 cut(s) 425, 629, 881
BcnI CCSGG 4 cut(s) 714, 741, 912, 913
BcoDI GTCTC 2 cut(s) 317, 392
BfaI CTAG 3 cut(s) 48, 93, 1011
BfmI CTRYAG 1 cut(s) 879
BfuAI ACCTGC 1 cut(s) 194
BfuI GTATCC 3 cut(s) 425, 629, 881
BglII AGATCT 1 cut(s) 601
BisI GCNGC 3 cut(s) 249, 614, 617
BlsI GCNGC 3 cut(s) 250, 615, 618
Bme1390I CCNGG 6 cut(s) 156, 687, 714, 741, 912, 913
BmeT110I CYCGRG 2 cut(s) 314, 911
BmrFI CCNGG 6 cut(s) 156, 687, 714, 741, 912, 913
BmrI ACTGGG 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 4 cut(s) 714, 741, 912, 913
BsaHI GRCGYC 1 cut(s) 545
BsaJI CCNNGG 7 cut(s) 348, 685, 712, 739, 910, 911, 912
BsaWI WCCGGW 2 cut(s) 794, 821
Bsc4I CCNNNNNNNGG 9 cut(s) 155, 228, 340, 656, 686, 740, 794, 821, 911
Bse118I RCCGGY 2 cut(s) 794, 821
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 156, 687
BseDI CCNNGG 7 cut(s) 348, 685, 712, 739, 910, 911, 912
BseGI GGATG 3 cut(s) 190, 961, 1011
BseLI CCNNNNNNNGG 9 cut(s) 155, 228, 340, 656, 686, 740, 794, 821, 911
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 235, 625
BshFI GGCC 1 cut(s) 232
BshTI ACCGGT 2 cut(s) 794, 821
BsiHKCI CYCGRG 2 cut(s) 314, 911
BsiSI CCGG 5 cut(s) 714, 741, 795, 822, 912
BslI CCNNNNNNNGG 9 cut(s) 155, 228, 340, 656, 686, 740, 794, 821, 911
BsmAI GTCTC 2 cut(s) 317, 392
BsnI GGCC 1 cut(s) 232
BsoBI CYCGRG 2 cut(s) 314, 911
Bsp143I GATC 3 cut(s) 289, 469, 601
BspACI CCGC 4 cut(s) 590, 617, 644, 896
BspANI GGCC 1 cut(s) 232
BspHI TCATGA 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 194
BspQI GCTCTTC 2 cut(s) 483, 504
BsrFI RCCGGY 2 cut(s) 794, 821
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 2 cut(s) 794, 821
BssECI CCNNGG 7 cut(s) 348, 685, 712, 739, 910, 911, 912
BssMI GATC 3 cut(s) 289, 469, 601
BssNI GRCGYC 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 156, 687
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 3 cut(s) 393, 483, 504
BstACI GRCGYC 1 cut(s) 545
BstF5I GGATG 3 cut(s) 190, 961, 1011
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 3 cut(s) 292, 472, 604
BstMAI GTCTC 2 cut(s) 317, 392
BstMBI GATC 3 cut(s) 289, 469, 601
BstMWI GCNNNNNNNGC 2 cut(s) 53, 257
BstNI CCWGG 2 cut(s) 156, 687
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 6 cut(s) 154, 685, 712, 739, 910, 911
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 2 cut(s) 235, 625
BstX2I RGATCY 1 cut(s) 601
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 1 cut(s) 601
BsuI GTATCC 3 cut(s) 425, 629, 881
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 3 cut(s) 190, 961, 1011
BveI ACCTGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 979
CfoI GCGC 1 cut(s) 719
Cfr10I RCCGGY 2 cut(s) 794, 821
Cfr9I CCCGGG 1 cut(s) 911
CseI GACGC 1 cut(s) 553
CspAI ACCGGT 2 cut(s) 794, 821
CviAII CATG 3 cut(s) 181, 411, 980
CviJI RGCY 4 cut(s) 19, 232, 248, 616
CviKI_1 RGCY 4 cut(s) 19, 232, 248, 616
DpnI GATC 3 cut(s) 291, 471, 603
DpnII GATC 3 cut(s) 289, 469, 601
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 393, 483, 504
EarI CTCTTC 3 cut(s) 393, 483, 504
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 232
Eco32I GATATC 1 cut(s) 920
Eco88I CYCGRG 2 cut(s) 314, 911
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 154, 685
EcoRV GATATC 1 cut(s) 920
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 3 cut(s) 184, 414, 983
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 3 cut(s) 180, 410, 979
Fnu4HI GCNGC 3 cut(s) 249, 614, 617
FokI GGATG 3 cut(s) 197, 968, 1018
Fsp4HI GCNGC 3 cut(s) 249, 614, 617
FspBI CTAG 3 cut(s) 48, 93, 1011
GlaI GCGC 1 cut(s) 718
GluI GCNGC 3 cut(s) 249, 614, 617
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 232
HapII CCGG 5 cut(s) 714, 741, 795, 822, 912
HgaI GACGC 1 cut(s) 553
HhaI GCGC 1 cut(s) 719
Hin1I GRCGYC 1 cut(s) 545
Hin1II CATG 3 cut(s) 184, 414, 983
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HinfI GANTC 5 cut(s) 774, 801, 828, 858, 959
HpaII CCGG 5 cut(s) 714, 741, 795, 822, 912
HphI GGTGA 4 cut(s) 218, 811, 894, 933
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 8 cut(s) 105, 314, 316, 458, 570, 605, 980, 1011
HpyAV CCTTC 5 cut(s) 116, 234, 238, 271, 826
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 6 cut(s) 203, 215, 424, 665, 692, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 257
Hsp92I GRCGYC 1 cut(s) 545
Hsp92II CATG 3 cut(s) 184, 414, 983
HspAI GCGC 1 cut(s) 717
Kzo9I GATC 3 cut(s) 289, 469, 601
LguI GCTCTTC 2 cut(s) 483, 504
Lsp1109I GCAGC 2 cut(s) 235, 625
MaeI CTAG 3 cut(s) 48, 93, 1011
MaeIII GTNAC 1 cut(s) 50
MalI GATC 3 cut(s) 291, 471, 603
MboI GATC 3 cut(s) 289, 469, 601
MboII GAAGA 6 cut(s) 16, 410, 500, 521, 595, 611
MflI RGATCY 1 cut(s) 601
MseI TTAA 2 cut(s) 81, 791
MspI CCGG 5 cut(s) 714, 741, 795, 822, 912
MspR9I CCNGG 6 cut(s) 156, 687, 714, 741, 912, 913
MvaI CCWGG 2 cut(s) 156, 687
MwoI GCNNNNNNNGC 2 cut(s) 53, 257
NciI CCSGG 4 cut(s) 714, 741, 912, 913
NdeII GATC 3 cut(s) 289, 469, 601
NlaIII CATG 3 cut(s) 184, 414, 983
NspI RCATGY 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 314
PagI TCATGA 1 cut(s) 979
PaqCI CACCTGC 1 cut(s) 194
PceI AGGCCT 1 cut(s) 232
PciSI GCTCTTC 2 cut(s) 483, 504
PfeI GAWTC 5 cut(s) 774, 801, 828, 858, 959
PflMI CCANNNNNTGG 2 cut(s) 155, 656
PfoI TCCNGGA 1 cut(s) 154
PinAI ACCGGT 2 cut(s) 794, 821
PkrI GCNGC 3 cut(s) 250, 615, 618
Psp6I CCWGG 2 cut(s) 154, 685
PspGI CCWGG 2 cut(s) 154, 685
PsuI RGATCY 1 cut(s) 601
SapI GCTCTTC 2 cut(s) 483, 504
SaqAI TTAA 2 cut(s) 81, 791
SatI GCNGC 3 cut(s) 249, 614, 617
Sau3AI GATC 3 cut(s) 289, 469, 601
ScrFI CCNGG 6 cut(s) 156, 687, 714, 741, 912, 913
SfcI CTRYAG 1 cut(s) 879
Sfr274I CTCGAG 1 cut(s) 314
SgrAI CRCCGGYG 1 cut(s) 821
SlaI CTCGAG 1 cut(s) 314
SmaI CCCGGG 1 cut(s) 913
SmlI CTYRAG 2 cut(s) 234, 314
SmoI CTYRAG 2 cut(s) 234, 314
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 4 cut(s) 590, 617, 644, 896
SspMI CTAG 3 cut(s) 48, 93, 1011
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 6 cut(s) 154, 685, 712, 739, 910, 911
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 4 cut(s) 315, 382, 429, 472
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 5 cut(s) 774, 801, 828, 858, 959
Tru1I TTAA 2 cut(s) 81, 791
Tru9I TTAA 2 cut(s) 81, 791
TseI GCWGC 2 cut(s) 248, 613
TspDTI ATGAA 2 cut(s) 17, 135
TspGWI ACGGA 2 cut(s) 280, 968
TspMI CCCGGG 1 cut(s) 911
Van91I CCANNNNNTGG 2 cut(s) 155, 656
XapI RAATTY 3 cut(s) 160, 374, 652
XbaI TCTAGA 1 cut(s) 1010
XceI RCATGY 1 cut(s) 414
XhoI CTCGAG 1 cut(s) 314
XmaI CCCGGG 1 cut(s) 911
XspI CTAG 3 cut(s) 48, 93, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.