FvH4_3g19631

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
12705704 .. 12706146
443 bp
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UTR
Exon/CDS
Intron
FvH4_3g19631.t1

Sequence Viewer

Length: 336 bp
ATGTCCGGAGTTAACACAACTTTGGCGAGATGGAGTCCGGAGGAAGACCTCCAATTGTGCAAGTCGTGGAGGTTTATTAGCCAAGATTCAAGAAAGGGTAATAATCAAAAGAAAGCCGAGCTATGGGATAATGTCTGCAAACACTACTTTGAAAATTTACCGGATGCTACGGATCGAAGTGCATCTGCATTTATAGGGAGGTGGAGAATTTTGAAACCCGAATTGTTTCAATGGCATTGTGCATTACGACAAGCTAAGAATTGGGTAAAGAGTGGAACAAATCCACTTGATGAGTATAAGAAAGCACAAGAGATTTGGAAAACAAGCCATGTCTAA

Protein Analysis

112

Amino Acids

13.1

Weight (kDa)

9.27

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 5, 37
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 2 cut(s) 154, 207
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 4 cut(s) 90, 152, 214, 230
AluBI AGCT 2 cut(s) 121, 254
AluI AGCT 2 cut(s) 121, 254
AlwI GGATC 1 cut(s) 180
Aor13HI TCCGGA 2 cut(s) 5, 37
ApoI RAATTY 2 cut(s) 154, 207
Asp700I GAANNNNTTC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 51
BccI CCATC 1 cut(s) 24
BmsI GCATC 2 cut(s) 154, 191
BpiI GAAGAC 1 cut(s) 51
BsaWI WCCGGW 3 cut(s) 5, 37, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 123
BseAI TCCGGA 2 cut(s) 5, 37
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 123
BsiSI CCGG 3 cut(s) 6, 38, 161
BslI CCNNNNNNNGG 1 cut(s) 123
Bsp13I TCCGGA 2 cut(s) 5, 37
Bsp143I GATC 1 cut(s) 172
BspEI TCCGGA 2 cut(s) 5, 37
BspPI GGATC 1 cut(s) 180
BssMI GATC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 169
CviAII CATG 1 cut(s) 329
CviJI RGCY 5 cut(s) 81, 116, 121, 254, 327
CviKI_1 RGCY 5 cut(s) 81, 116, 121, 254, 327
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 124, 194, 297, 330
FatI CATG 1 cut(s) 328
FokI GGATG 1 cut(s) 176
HapII CCGG 3 cut(s) 6, 38, 161
Hin1II CATG 1 cut(s) 332
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 34, 86
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 3 cut(s) 6, 38, 161
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 6, 38, 90
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4V TGCA 5 cut(s) 60, 138, 182, 188, 242
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 332
Kpn2I TCCGGA 2 cut(s) 5, 37
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 19, 51, 174
LweI GCATC 2 cut(s) 154, 191
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 56
MfeI CAATTG 1 cut(s) 53
MluCI AATT 5 cut(s) 53, 154, 207, 221, 259
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 4 cut(s) 34, 59, 63, 192
MroI TCCGGA 2 cut(s) 5, 37
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 12
MspI CCGG 3 cut(s) 6, 38, 161
MunI CAATTG 1 cut(s) 53
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 332
NmeAIII GCCGAG 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 86
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 43
SetI ASST 5 cut(s) 51, 74, 123, 203, 256
SfaNI GCATC 2 cut(s) 154, 191
Sse9I AATT 5 cut(s) 53, 154, 207, 221, 259
TaqI TCGA 1 cut(s) 175
TasI AATT 5 cut(s) 53, 154, 207, 221, 259
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 2 cut(s) 154, 207
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.