Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006086

Physical Location & Seq

Genomic Coordinates Forward (+)

20963686 .. 20966341

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGAGAGCAGCTTGTAGCAGTGTCGTCACGGCTATGGCTTTGTTACCCTCTAAGTCTCTTCTCTGTAGAAACCAGTTATTATTCTCCGGTAATTCCAAGTTCGTCGGAGTTTTGACTCTCCAGAAGCGATGCTTTTCCTCCAAAGTAAGCATGAGTTTGAAAGCTGGTATCGTCGGTCTTCCTAACGTCGGAAAGTCTACTCTTTTTAACGCCGTCGTTGAGAATGGAAAGGCTCAAGCTGCTAATTTTCCCTTTTGTACGATTGAGCCTAATGTGGGTATTGTTGCTGTTCCTGATTCGCGTCTTCAAGTGCTTTCTAAACTTAGTGGTTCTCAGAAAACGGTTCCTGCTTCTATTGAGTTTGTGGACATTGCTGGTCTTGTCAAGGGTGCTAGTCAAGGCGAAGGTTTAGGCAATAAGTTCTTATCTCACATCAGAGAAGTTGATTCCATCCTCCAGGTGGTGAGATGTTTTGAGGACAATGACATTATTCATGTGAATGGTAAAGTTGATCCAAAGTCTGACATTGATGTCATCAATCTCGAGCTTATTTTCTGCGACTTAGATCAGATTGGTAAAAGGATCGAGAGACTAAAGAAAGGGAAGGCTAAGGATTCACAATCCAAAGTCAAGGAGGAAGCTGAAAAATCTGCTTTGGAAAGAATTCAGGAAGCTCTTCTGGAAGGAAAACCTGCACGGTCAGTTGCATTGTCCGATCTCGAGATGGAAGTTGTAAAGCATCTCTGCTTGCTTACAATGAAACCTATGATCTACGTGGCAAATGTTGCTGAAACTGATCTTGCTGAGCCAGAGAAGAATGCTTACGTTGAAGAAGTGAAGGGTCTTTCTTCTGATTTGCAGTCCGGACATGTAGTTGTTTCAGCACAGGTTGAGTCAGAGCTAACCGAACTTCCTCTTGAAGAACGCACAGAATATTTGAACTCTCTTGGTGTCAGTGAAAGTGGCCTCGGGAACCTTATCAGGGCAACATACAGCCTGCTAGGTTTGCAGACATATTTCACTTCTGGTGAAAAGGAAACAAGAGCATGGACAATACACGCTGGCATGACTGCACCACAAGCTGCTGGCGTCATTCATTCTGACTTTGAGAAAGGTTTTATTAGAGCTGAGACTGTTGCATATGAAGATTTTGTCACTGCTGGATCTATAGCAGCAGCAAGGGAGAAAGGACTTTTGAGATCAGAGGGTAAAGAGTACATTGTTAAAGAAGGAGATGTGATGCTTTTCCGCTTCAACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

421

Amino Acids

45.63

Weight (kDa)

5.73

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	56 - 161	5.3e-21	50S ribosome-binding GTPase
FeoB_N	PF02421	57 - 105	3e-06	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	337 - 420	4.4e-38	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56050
fragaria_vesca	FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830
malus_domestica	MD10G1202000.v1.1
prunus_persica	Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1
pyrus_communis	pycom10g17280
rosa_chinensis	RchiOBHm_Chr5g0026631
rosa_laevigata	RLG00000032941
rosa_multiflora	Rmu_sc0004490.1_g000004 Rmu_sc0011370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052840
rosa_rugosa	Rorug05G0094300 Rorug05G0094400 Rorug05G0094500
rosa_samantha	Rh5CG204200 Rh5DG186600
rosa_wichuraiana	Rw5G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	1 cut(s)	304
AccIII	TCCGGA	1 cut(s)	866
AciI	CCGC	1 cut(s)	1252
AclWI	GGATC	3 cut(s)	509, 593, 1174
AcsI	RAATTY	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	1092
AfaI	GTAC	2 cut(s)	262, 1220
AfiI	CCNNNNNNNGG	4 cut(s)	191, 278, 463, 985
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	6 cut(s)	163, 311, 833, 923, 943, 1258
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	9 cut(s)	14, 167, 242, 550, 644, 677, 904, 1085, 1130
AluI	AGCT	9 cut(s)	14, 167, 242, 550, 644, 677, 904, 1085, 1130
Alw26I	GTCTC	3 cut(s)	63, 586, 1127
AlwI	GGATC	3 cut(s)	509, 593, 1174
Ama87I	CYCGRG	3 cut(s)	545, 722, 971
Aor13HI	TCCGGA	1 cut(s)	866
AoxI	GGCC	1 cut(s)	967
ApeKI	GCWGC	5 cut(s)	11, 242, 1085, 1175, 1178
ApoI	RAATTY	1 cut(s)	666
Asp700I	GAANNNNTTC	2 cut(s)	666, 678
AsuHPI	GGTGA	2 cut(s)	478, 1043
AvaI	CYCGRG	3 cut(s)	545, 722, 971
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
BbsI	GAAGAC	2 cut(s)	173, 299
BbvI	GCAGC	5 cut(s)	23, 229, 1072, 1187, 1190
BccI	CCATC	2 cut(s)	461, 721
BceAI	ACGGC	2 cut(s)	48, 200
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	63, 586, 1127
BfaI	CTAG	2 cut(s)	396, 1004
BfmI	CTRYAG	2 cut(s)	67, 1170
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	5 cut(s)	12, 243, 1086, 1176, 1179
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	5 cut(s)	13, 244, 1087, 1177, 1180
Bme1390I	CCNGG	1 cut(s)	461
BmeT110I	CYCGRG	3 cut(s)	545, 722, 971
BmiI	GGNNCC	2 cut(s)	348, 977
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	122, 751, 1233
BpiI	GAAGAC	2 cut(s)	173, 299
BpmI	CTGGAG	2 cut(s)	107, 443
Bpu10I	CCTNAGC	1 cut(s)	612
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	1092
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	2 cut(s)	89, 866
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 278, 463, 985
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	191, 278, 463, 985
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	3 cut(s)	350, 798, 1122
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	5 cut(s)	23, 229, 1072, 1187, 1190
BsgI	GTGCAG	2 cut(s)	681, 1059
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	969
BsiHKCI	CYCGRG	3 cut(s)	545, 722, 971
BsiSI	CCGG	2 cut(s)	90, 867
BslI	CCNNNNNNNGG	4 cut(s)	191, 278, 463, 985
BsmAI	GTCTC	3 cut(s)	63, 586, 1127
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	969
BsoBI	CYCGRG	3 cut(s)	545, 722, 971
Bsp13I	TCCGGA	1 cut(s)	866
Bsp143I	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
Bsp1720I	GCTNAGC	1 cut(s)	807
BspACI	CCGC	1 cut(s)	1252
BspANI	GGCC	1 cut(s)	969
BspCNI	CTCAG	3 cut(s)	349, 799, 1123
BspEI	TCCGGA	1 cut(s)	866
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	348, 977
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	3 cut(s)	509, 593, 1174
BspQI	GCTCTTC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
BssNI	GRCGYC	1 cut(s)	1092
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	3 cut(s)	346, 702, 1138
Bst6I	CTCTTC	2 cut(s)	66, 684
BstACI	GRCGYC	1 cut(s)	1092
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstBAI	YACGTR	1 cut(s)	778
BstC8I	GCNNGC	4 cut(s)	752, 1001, 1066, 1090
BstDEI	CTNAG	7 cut(s)	54, 326, 336, 565, 612, 807, 1131
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	8 cut(s)	517, 571, 588, 721, 774, 802, 1169, 1205
BstMAI	GTCTC	3 cut(s)	63, 586, 1127
BstMBI	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 242, 788, 1009, 1082
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	2 cut(s)	67, 1170
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	5 cut(s)	23, 229, 1072, 1187, 1190
BstV2I	GAAGAC	2 cut(s)	173, 299
BstX2I	RGATCY	1 cut(s)	1166
BstYI	RGATCY	1 cut(s)	1166
BsuRI	GGCC	1 cut(s)	969
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	2 cut(s)	28, 1158
BtsIMutI	CAGTG	3 cut(s)	28, 964, 1158
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	4 cut(s)	752, 1001, 1066, 1090
CseI	GACGC	2 cut(s)	293, 1081
Csp6I	GTAC	2 cut(s)	261, 1219
CviAII	CATG	5 cut(s)	154, 497, 872, 1050, 1069
CviQI	GTAC	2 cut(s)	261, 1219
DdeI	CTNAG	7 cut(s)	54, 326, 336, 565, 612, 807, 1131
DpnI	GATC	8 cut(s)	516, 570, 587, 720, 773, 801, 1168, 1204
DpnII	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
Eam1104I	CTCTTC	2 cut(s)	66, 684
EarI	CTCTTC	2 cut(s)	66, 684
Eco88I	CYCGRG	3 cut(s)	545, 722, 971
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	459
FaeI	CATG	5 cut(s)	157, 500, 875, 1053, 1072
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	5 cut(s)	153, 496, 871, 1049, 1068
FauNDI	CATATG	1 cut(s)	1144
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	5 cut(s)	12, 243, 1086, 1176, 1179
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	5 cut(s)	12, 243, 1086, 1176, 1179
FspBI	CTAG	2 cut(s)	396, 1004
GluI	GCNGC	5 cut(s)	12, 243, 1086, 1176, 1179
GsuI	CTGGAG	2 cut(s)	107, 443
HaeIII	GGCC	1 cut(s)	969
HapII	CCGG	2 cut(s)	90, 867
HgaI	GACGC	2 cut(s)	293, 1081
Hin1I	GRCGYC	1 cut(s)	1092
Hin1II	CATG	5 cut(s)	157, 500, 875, 1053, 1072
HinfI	GANTC	5 cut(s)	118, 299, 449, 617, 896
HpaII	CCGG	2 cut(s)	90, 867
HphI	GGTGA	2 cut(s)	478, 1043
Hpy166II	GTNNAC	2 cut(s)	201, 370
Hpy8I	GTNNAC	2 cut(s)	201, 370
Hpy99I	CGWCG	4 cut(s)	110, 179, 194, 221
HpyAV	CCTTC	5 cut(s)	401, 601, 680, 835, 1226
HpyCH4III	ACNGT	3 cut(s)	346, 702, 1138
HpyCH4IV	ACGT	4 cut(s)	189, 777, 828, 1260
HpyCH4V	TGCA	6 cut(s)	698, 710, 862, 1012, 1076, 1142
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 242, 788, 1009, 1082
HpyF3I	CTNAG	7 cut(s)	54, 326, 336, 565, 612, 807, 1131
HpySE526I	ACGT	4 cut(s)	189, 777, 828, 1260
Hsp92I	GRCGYC	1 cut(s)	1092
Hsp92II	CATG	5 cut(s)	157, 500, 875, 1053, 1072
Kpn2I	TCCGGA	1 cut(s)	866
Kzo9I	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
LguI	GCTCTTC	1 cut(s)	684
Lsp1109I	GCAGC	5 cut(s)	23, 229, 1072, 1187, 1190
LweI	GCATC	3 cut(s)	122, 751, 1233
MaeI	CTAG	2 cut(s)	396, 1004
MaeII	ACGT	4 cut(s)	189, 777, 828, 1260
MaeIII	GTNAC	3 cut(s)	28, 45, 1156
MalI	GATC	8 cut(s)	516, 570, 587, 720, 773, 801, 1168, 1204
MboI	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
MboII	GAAGA	9 cut(s)	53, 173, 299, 671, 829, 843, 845, 935, 1160
MflI	RGATCY	1 cut(s)	1166
MluCI	AATT	3 cut(s)	94, 247, 666
MlyI	GAGTC	2 cut(s)	112, 905
MmeI	TCCRAC	2 cut(s)	88, 172
MnlI	CCTC	8 cut(s)	61, 151, 467, 472, 631, 927, 980, 1201
MroI	TCCGGA	1 cut(s)	866
MroXI	GAANNNNTTC	2 cut(s)	666, 678
MseI	TTAA	2 cut(s)	210, 1227
MslI	CAYNNNNRTG	2 cut(s)	35, 501
MspI	CCGG	2 cut(s)	90, 867
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	5 cut(s)	11, 242, 788, 1009, 1082
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
NlaIII	CATG	5 cut(s)	157, 500, 875, 1053, 1072
NlaIV	GGNNCC	2 cut(s)	348, 977
NmuCI	GTSAC	2 cut(s)	28, 1156
NspI	RCATGY	1 cut(s)	875
PaeR7I	CTCGAG	2 cut(s)	545, 722
PciI	ACATGT	1 cut(s)	871
PciSI	GCTCTTC	1 cut(s)	684
PctI	GAATGC	1 cut(s)	826
PdmI	GAANNNNTTC	2 cut(s)	666, 678
PfeI	GAWTC	3 cut(s)	299, 449, 617
PkrI	GCNGC	5 cut(s)	13, 244, 1087, 1177, 1180
PleI	GAGTC	2 cut(s)	112, 904
PpsI	GAGTC	2 cut(s)	112, 904
Ppu21I	YACGTR	1 cut(s)	778
PscI	ACATGT	1 cut(s)	871
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	348, 977
PsuI	RGATCY	1 cut(s)	1166
RsaI	GTAC	2 cut(s)	262, 1220
RsaNI	GTAC	2 cut(s)	261, 1219
RseI	CAYNNNNRTG	2 cut(s)	35, 501
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	210, 1227
SatI	GCNGC	5 cut(s)	12, 243, 1086, 1176, 1179
Sau3AI	GATC	8 cut(s)	514, 568, 585, 718, 771, 799, 1166, 1202
SchI	GAGTC	2 cut(s)	112, 905
ScrFI	CCNGG	1 cut(s)	461
SfaNI	GCATC	3 cut(s)	122, 751, 1233
SfcI	CTRYAG	2 cut(s)	67, 1170
Sfr274I	CTCGAG	2 cut(s)	545, 722
SlaI	CTCGAG	2 cut(s)	545, 722
SmiMI	CAYNNNNRTG	2 cut(s)	35, 501
SmlI	CTYRAG	3 cut(s)	237, 545, 722
SmoI	CTYRAG	3 cut(s)	237, 545, 722
Sse9I	AATT	3 cut(s)	94, 247, 666
SsiI	CCGC	1 cut(s)	1252
SspI	AATATT	1 cut(s)	938
SspMI	CTAG	2 cut(s)	396, 1004
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	346, 702, 1138
TaiI	ACGT	4 cut(s)	192, 780, 831, 1263
TaqI	TCGA	3 cut(s)	546, 588, 723
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	94, 247, 666
TatI	WGTACW	1 cut(s)	1218
TfiI	GAWTC	3 cut(s)	299, 449, 617
Tru1I	TTAA	2 cut(s)	210, 1227
Tru9I	TTAA	2 cut(s)	210, 1227
TscAI	CASTG	3 cut(s)	28, 964, 1165
TseFI	GTSAC	2 cut(s)	28, 1156
TseI	GCWGC	5 cut(s)	11, 242, 1085, 1175, 1178
Tsp45I	GTSAC	2 cut(s)	28, 1156
TspDTI	ATGAA	4 cut(s)	485, 776, 1088, 1161
TspRI	CASTG	3 cut(s)	28, 964, 1165
XapI	RAATTY	1 cut(s)	666
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	2 cut(s)	545, 722
XmiI	GTMKAC	1 cut(s)	200
XmnI	GAANNNNTTC	2 cut(s)	666, 678
XspI	CTAG	2 cut(s)	396, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.