Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006086

Physical Location & Seq

Genomic Coordinates Forward (+)

29990468 .. 29996434

Gene Structure 5967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1202000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCTCGAATAGGACTATGCAGTCAGCTGCTTCCGTCTCTGCTCGTTCCTCTGAAGCAGAGGAACCATCAACAGCTGATGGGCGTCATAGCCACCGGTTTCGGCAGAAGGCGGGGCTTCTCTGCTGGGTCCTCATCAAAAATTAGCATGAGCCTCAAAGCCGGCATCGTTGGCCTCCCAAATGTCGGCAAGTCCACTCTCTTCAACGCCGTCGTTGAGAATGGAAAGGCTCAAGCTGCCAACTTTCCTTTTTGTACTATAGAGCCGAATGTAGGAATTGTCGCAGTTCCAGATCCCCGTCTCAGTGTGCTTTCAGATCTCAGCAAATCTCAGAGGGCAGTTCCAGCATCTATAGAACTTGTAGATATTGCTGGCCTCGTCAAGGGTGCCAGTCAAGGGGAGGGGTTAGGGAATAAATTTTTATCAAATATTCGCGAGGTGGACTCCATACTTCAGGTCGTTCGCTGTTTTGAAGATAACGATGTTGTTCATGTGAGTGGCAAAGTTGATCCTAAGGCAGATATTGATGTTATCAACTTGGAGCTTATTTTCTCAGATCTAGACCAGATTGAGAAGAGAATGGAGAAGCTGAAAAAAGGAAAGGCAAAAGACTCACAAACCAAAGCTAAGGAGGAAACAGAAAGGTCCACCTTAGACAAAATTCAGAATGCACTGATGGATGGAAAACCAGCACGATCAGTCGCTTTAACAGATTTGGAAAAAGATGCTGTGAAGCATCTTTGCTTGCTTACAATGAAACCTATTATATATGTTGCTAATGTTGCAGAATCTGATCTAGCTGAACCTGAGCTTAATCCTCACGTCAAAGAAGTGATGAATCTTGCTCCTGAGTTGCAATCTGGAGTTGTGACTATTTCTGCACAGGTTGAGTCTGAGCTCACTGAATTACCATATGAAGAAAGAACAGAATTTTTGGAATCTCTTGGTGTTGGTGAAAGTGGTCTCGGAAACCTTATCAGAGCAACATATAGCGTTTTGGGGCTACGTACTTACTTTACATCCGGAGAGAAGGAAACAAAAGCATGGACCATACTTGCAGGAATGACTGCACCCCAAGCTGCTGGGGTCATACACTCTGACTTTGAGAAAGGTTTCATTCGAGCTGAGACGGTGGCTTATGATGATTTTGTCGCTGCTGGTTCGCTTGCTGCAGCAAGGGAAAGAGGAGTTTTGAGATCTGAGGGCAAAGATTACATTGTACAAGAAGGAGACGTGATGCTGTTTCGTTTTAACGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

420

Amino Acids

45.31

Weight (kDa)

5.52

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	54 - 161	1.5e-20	50S ribosome-binding GTPase
FeoB_N	PF02421	55 - 101	5.6e-06	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	335 - 418	1.1e-36	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56050
fragaria_vesca	FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830
malus_domestica	MD10G1202000.v1.1
prunus_persica	Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1
pyrus_communis	pycom10g17280
rosa_chinensis	RchiOBHm_Chr5g0026631
rosa_laevigata	RLG00000032941
rosa_multiflora	Rmu_sc0004490.1_g000004 Rmu_sc0011370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052840
rosa_rugosa	Rorug05G0094300 Rorug05G0094400 Rorug05G0094500
rosa_samantha	Rh5CG204200 Rh5DG186600
rosa_wichuraiana	Rw5G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	386
AccII	CGCG	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	1022
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	287, 503
AcsI	RAATTY	3 cut(s)	416, 660, 929
AcuI	CTGAAG	2 cut(s)	74, 437
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	256, 1009, 1221
AfiI	CCNNNNNNNGG	4 cut(s)	185, 272, 382, 396
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	205, 473
AjiI	CACGTC	2 cut(s)	823, 1234
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	5 cut(s)	42, 305, 968, 1121, 1224
AlwI	GGATC	2 cut(s)	287, 503
AlwNI	CAGNNNCTG	1 cut(s)	791
Aor13HI	TCCGGA	1 cut(s)	1022
AoxI	GGCC	2 cut(s)	172, 373
ApeKI	GCWGC	6 cut(s)	28, 236, 1079, 1154, 1169, 1172
ApoI	RAATTY	3 cut(s)	416, 660, 929
AsiGI	ACCGGT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	1112
AspS9I	GGNCC	3 cut(s)	129, 645, 1047
AsuHPI	GGTGA	1 cut(s)	965
AvaII	GGWCC	3 cut(s)	129, 645, 1047
AxyI	CCTNAGG	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	900
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	6 cut(s)	15, 223, 1066, 1141, 1156, 1184
BccI	CCATC	4 cut(s)	73, 75, 670, 674
BceAI	ACGGC	1 cut(s)	194
BcoDI	GTCTC	5 cut(s)	42, 305, 968, 1121, 1224
BfaI	CTAG	2 cut(s)	560, 797
BfmI	CTRYAG	3 cut(s)	258, 351, 1170
BglII	AGATCT	3 cut(s)	316, 556, 1196
BisI	GCNGC	6 cut(s)	29, 237, 1080, 1155, 1170, 1173
BlsI	GCNGC	6 cut(s)	30, 238, 1081, 1156, 1171, 1174
Bme18I	GGWCC	3 cut(s)	129, 645, 1047
BmgBI	CACGTC	2 cut(s)	823, 1234
BmgT120I	GGNCC	3 cut(s)	129, 645, 1047
BmiI	GGNNCC	3 cut(s)	65, 130, 388
BmsI	GCATC	5 cut(s)	174, 356, 715, 745, 1227
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	2 cut(s)	627, 807
BpuEI	CTTGAG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	1007
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	968
BsaWI	WCCGGW	2 cut(s)	95, 1022
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 272, 382, 396
Bse118I	RCCGGY	2 cut(s)	95, 161
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	1022
BseGI	GGATG	2 cut(s)	685, 1019
BseLI	CCNNNNNNNGG	4 cut(s)	185, 272, 382, 396
BseMII	CTCAG	9 cut(s)	316, 334, 344, 567, 798, 840, 885, 1116, 1191
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	1200
BseXI	GCAGC	6 cut(s)	15, 223, 1066, 1141, 1156, 1184
BseYI	CCCAGC	2 cut(s)	125, 1082
BsgI	GTGCAG	2 cut(s)	864, 1053
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	174, 375
BshNI	GGYRCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	900
BsiSI	CCGG	3 cut(s)	96, 162, 1023
BslI	CCNNNNNNNGG	4 cut(s)	185, 272, 382, 396
BsmAI	GTCTC	5 cut(s)	42, 305, 968, 1121, 1224
BsmBI	CGTCTC	4 cut(s)	42, 305, 1121, 1224
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	174, 375
Bso31I	GGTCTC	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp13I	TCCGGA	1 cut(s)	1022
Bsp1407I	TGTACA	1 cut(s)	1219
Bsp143I	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
Bsp68I	TCGCGA	1 cut(s)	435
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	174, 375
BspCNI	CTCAG	9 cut(s)	315, 333, 343, 566, 799, 841, 886, 1117, 1192
BspEI	TCCGGA	1 cut(s)	1022
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	3 cut(s)	65, 130, 388
BspMAI	CTGCAG	1 cut(s)	1174
BspPI	GGATC	2 cut(s)	287, 503
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	968
BsrFI	RCCGGY	2 cut(s)	95, 161
BsrGI	TGTACA	1 cut(s)	1219
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	95, 161
BssMI	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	1132
Bst6I	CTCTTC	2 cut(s)	206, 569
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	1219
BstBAI	YACGTR	1 cut(s)	1007
BstC8I	GCNNGC	4 cut(s)	163, 373, 746, 1167
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	685, 1019
BstFNI	CGCG	1 cut(s)	435
BstKTI	GATC	7 cut(s)	295, 319, 511, 559, 698, 796, 1199
BstMAI	GTCTC	5 cut(s)	42, 305, 968, 1121, 1224
BstMBI	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 236, 344, 782, 1076
BstSFI	CTRYAG	3 cut(s)	258, 351, 1170
BstSNI	TACGTA	1 cut(s)	1007
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	6 cut(s)	15, 223, 1066, 1141, 1156, 1184
BstX2I	RGATCY	4 cut(s)	292, 316, 556, 1196
BstXI	CCANNNNNNTGG	1 cut(s)	1082
BstYI	RGATCY	4 cut(s)	292, 316, 556, 1196
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	174, 375
BtrI	CACGTC	2 cut(s)	823, 1234
BtsCI	GGATG	2 cut(s)	685, 1019
BtsIMutI	CAGTG	3 cut(s)	310, 671, 900
BtuMI	TCGCGA	1 cut(s)	435
Cac8I	GCNNGC	4 cut(s)	163, 373, 746, 1167
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr10I	RCCGGY	2 cut(s)	95, 161
Cfr13I	GGNCC	3 cut(s)	129, 645, 1047
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	255, 1008, 1220
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	148, 491, 1044
CviQI	GTAC	3 cut(s)	255, 1008, 1220
DpnI	GATC	7 cut(s)	294, 318, 510, 558, 697, 795, 1198
DpnII	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
DrdI	GACNNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	206, 569
EarI	CTCTTC	2 cut(s)	206, 569
Ecl136II	GAGCTC	1 cut(s)	898
Eco105I	TACGTA	1 cut(s)	1007
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	968
Eco47I	GGWCC	3 cut(s)	129, 645, 1047
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	74, 437
Eco81I	CCTNAGG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	898
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	900
Esp3I	CGTCTC	4 cut(s)	42, 305, 1121, 1224
FaeI	CATG	3 cut(s)	151, 494, 1047
FatI	CATG	3 cut(s)	147, 490, 1043
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	913
Fnu4HI	GCNGC	6 cut(s)	29, 237, 1080, 1155, 1170, 1173
FokI	GGATG	2 cut(s)	692, 1006
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	6 cut(s)	29, 237, 1080, 1155, 1170, 1173
FspBI	CTAG	2 cut(s)	560, 797
GluI	GCNGC	6 cut(s)	29, 237, 1080, 1155, 1170, 1173
GsaI	CCCAGC	2 cut(s)	129, 1086
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	174, 375
HapII	CCGG	3 cut(s)	96, 162, 1023
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	151, 494, 1047
HinfI	GANTC	6 cut(s)	443, 611, 788, 838, 890, 938
HpaII	CCGG	3 cut(s)	96, 162, 1023
HphI	GGTGA	1 cut(s)	965
Hpy166II	GTNNAC	3 cut(s)	195, 442, 648
Hpy188III	TCNNGA	6 cut(s)	290, 434, 560, 848, 861, 1023
Hpy8I	GTNNAC	3 cut(s)	195, 442, 648
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	102, 1024, 1220
HpyCH4III	ACNGT	1 cut(s)	1132
HpyCH4IV	ACGT	4 cut(s)	822, 1006, 1233, 1254
HpyCH4V	TGCA	8 cut(s)	21, 671, 785, 856, 881, 1058, 1070, 1172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 236, 344, 782, 1076
HpySE526I	ACGT	4 cut(s)	822, 1006, 1233, 1254
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	151, 494, 1047
Kpn2I	TCCGGA	1 cut(s)	1022
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
LmnI	GCTCC	2 cut(s)	541, 850
Lsp1109I	GCAGC	6 cut(s)	15, 223, 1066, 1141, 1156, 1184
LweI	GCATC	5 cut(s)	174, 356, 715, 745, 1227
MaeI	CTAG	2 cut(s)	560, 797
MaeII	ACGT	4 cut(s)	822, 1006, 1233, 1254
MaeIII	GTNAC	1 cut(s)	868
MalI	GATC	7 cut(s)	294, 318, 510, 558, 697, 795, 1198
MboI	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
MboII	GAAGA	4 cut(s)	193, 485, 586, 929
MflI	RGATCY	4 cut(s)	292, 316, 556, 1196
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	6 cut(s)	141, 276, 416, 660, 905, 929
MlyI	GAGTC	3 cut(s)	437, 605, 899
MroI	TCCGGA	1 cut(s)	1022
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	1112
MseI	TTAA	3 cut(s)	707, 813, 1251
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	28, 76
MspI	CCGG	3 cut(s)	96, 162, 1023
Mva1269I	GAATGC	1 cut(s)	673
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	5 cut(s)	171, 236, 344, 782, 1076
NaeI	GCCGGC	1 cut(s)	163
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	151, 494, 1047
NlaIV	GGNNCC	3 cut(s)	65, 130, 388
NmuCI	GTSAC	1 cut(s)	868
NruI	TCGCGA	1 cut(s)	435
PctI	GAATGC	1 cut(s)	673
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	1112
PfeI	GAWTC	3 cut(s)	788, 838, 938
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	30, 238, 1081, 1156, 1171, 1174
PleI	GAGTC	3 cut(s)	437, 605, 898
PpsI	GAGTC	3 cut(s)	437, 605, 898
Ppu21I	YACGTR	1 cut(s)	1007
PpuMI	RGGWCCY	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	900
Psp5II	RGGWCCY	1 cut(s)	129
PspFI	CCCAGC	2 cut(s)	125, 1082
PspN4I	GGNNCC	3 cut(s)	65, 130, 388
PspPI	GGNCC	3 cut(s)	129, 645, 1047
PspPPI	RGGWCCY	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	1174
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	4 cut(s)	292, 316, 556, 1196
PvuII	CAGCTG	2 cut(s)	28, 76
RruI	TCGCGA	1 cut(s)	435
RsaI	GTAC	3 cut(s)	256, 1009, 1221
RsaNI	GTAC	3 cut(s)	255, 1008, 1220
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	900
SaqAI	TTAA	3 cut(s)	707, 813, 1251
SatI	GCNGC	6 cut(s)	29, 237, 1080, 1155, 1170, 1173
Sau3AI	GATC	7 cut(s)	292, 316, 508, 556, 695, 793, 1196
Sau96I	GGNCC	3 cut(s)	129, 645, 1047
SchI	GAGTC	3 cut(s)	437, 605, 899
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	5 cut(s)	174, 356, 715, 745, 1227
SfcI	CTRYAG	3 cut(s)	258, 351, 1170
SinI	GGWCC	3 cut(s)	129, 645, 1047
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SnaBI	TACGTA	1 cut(s)	1007
Sse9I	AATT	6 cut(s)	141, 276, 416, 660, 905, 929
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	560, 797
SstI	GAGCTC	1 cut(s)	900
TaaI	ACNGT	1 cut(s)	1132
TaiI	ACGT	4 cut(s)	825, 1009, 1236, 1257
TaqI	TCGA	2 cut(s)	7, 1120
TasI	AATT	6 cut(s)	141, 276, 416, 660, 905, 929
TatI	WGTACW	2 cut(s)	254, 1219
TfiI	GAWTC	3 cut(s)	788, 838, 938
Tru1I	TTAA	3 cut(s)	707, 813, 1251
Tru9I	TTAA	3 cut(s)	707, 813, 1251
TscAI	CASTG	3 cut(s)	310, 678, 907
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	6 cut(s)	28, 236, 1079, 1154, 1169, 1172
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	5 cut(s)	479, 770, 851, 930, 1105
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	310, 678, 907
VpaK11BI	GGWCC	3 cut(s)	129, 645, 1047
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	3 cut(s)	416, 660, 929
XbaI	TCTAGA	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	1112
XspI	CTAG	2 cut(s)	560, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.