Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006086

Physical Location & Seq

Genomic Coordinates Reverse (-)

9957679 .. 9964418

Gene Structure 6740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15830.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCTCGAATATCACTATGCAACCAGCTCATCCCATCTCTTCTTGTTCCAATGAAGCAGAGGAGCCACTATCAGCTCATGGGAGTCTTCGGTTTAACCAGAGGCCGCCGCTTCTCTGCTTCCTCCTCACCCAAGATCAGCATGAGCCTCAAAGCCGGCATCGTCGGCCTCCCCAACGTCGGAAAGTCCACGCTTTTCAACGCCGTCGTTGAGAATGGGAAGGCTCAAGCTGCCAATTTTCCGTTTTGTACGATTGAGCCAAATGTAGGGATTGTTGCAGTTCCGGATCCGCGCCTGAATGTACTTTCTGATCTCAGCAAGTCTCAGCGCGTAGTCCCGGCATCTTTGGAGCTTGTGGATATTGCTGGCCTTGTTAAGGGTGCCAGTCAAGGAGAGGGGTTGGGGAATAAATTTTTGTCAAATATTCGCGAGGTGGACTCCATACTTCAGGTTGTTCGCTGTTTTGAAGATAATGATGTTGTTCATGTGAATGGGAAAGTTGATCCGAAGGATGATATTGATGTTATCAACTTAGAGCTGATTTTCTCAGATCTGGACCAGATTGAGAAAAGAATGGAGAAGCTCAAGAAAAGCAAGACAAAAGATTCACAATCCAAACTTAAGGAGGAATCAGAAAGGTCTGGCTTGGAGAGAATTCAGCAGGCACTCATGGATGGGAAACCAGCACGATCAGTCACTTTAACAGATACAGAAAATGAATCTATAAAGCATCTGTGCTTGCTTACAATGAAACCTGTTATCTATGTTGCTAATGTTGCTGAATCTGATCTAGCTGAACCCGGAGAGAATCCTCATGTCAAAGCACTGATGAATCTTGCTTCTGAGTTGCAATGTGGAGTAGTAACAATTTCAGCACAGGTCGAGTCTGAACTAACTGAATTACCATCTGAAGAAAGAACAGAATTTTTGGAATCTCTTGGTGTTGGTGAAAGTGGTCTTGGAAACCTAATCAGAACAACATACAGTGTTTTGGGGCTGCGTACTTACTTCACTTCAGGAGAGAAGGAAACAAAAGCATGGACCATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGGGTCATCCACTCTGACTTTGAGAAGGGTTTCATTCGAGCTGAGACCGTGTCTTATGATGATTTTGTTGCTGCTGGTTCACTTGCTGCAGCAAGGGAAAGAGGAGTTTTAAGATCTGAGGGTAAAGATTACATCGTACAAGAAGGAGATGTAATGCTGTTCCGGTTTAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

418

Amino Acids

45.43

Weight (kDa)

5.43

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	52 - 163	2.1e-20	50S ribosome-binding GTPase
FeoB_N	PF02421	53 - 100	4.6e-06	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	333 - 397	3.5e-25	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56050
fragaria_vesca	FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830
malus_domestica	MD10G1202000.v1.1
prunus_persica	Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1
pyrus_communis	pycom10g17280
rosa_chinensis	RchiOBHm_Chr5g0026631
rosa_laevigata	RLG00000032941
rosa_multiflora	Rmu_sc0004490.1_g000004 Rmu_sc0011370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052840
rosa_rugosa	Rorug05G0094300 Rorug05G0094400 Rorug05G0094500
rosa_samantha	Rh5CG204200 Rh5DG186600
rosa_wichuraiana	Rw5G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccII	CGCG	3 cut(s)	292, 330, 429
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	3 cut(s)	106, 109, 290
AclI	AACGTT	1 cut(s)	1248
AclWI	GGATC	3 cut(s)	281, 294, 497
AcsI	RAATTY	3 cut(s)	410, 654, 923
AcuI	CTGAAG	3 cut(s)	431, 930, 999
AfaI	GTAC	4 cut(s)	250, 303, 1003, 1215
AfiI	CCNNNNNNNGG	3 cut(s)	179, 266, 376
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	199, 467
AjuI	GAANNNNNNNTTGG	2 cut(s)	942, 974
AluBI	AGCT	9 cut(s)	28, 76, 230, 352, 538, 583, 794, 1076, 1118
AluI	AGCT	9 cut(s)	28, 76, 230, 352, 538, 583, 794, 1076, 1118
Alw26I	GTCTC	2 cut(s)	327, 1115
AlwI	GGATC	3 cut(s)	281, 294, 497
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	3 cut(s)	103, 166, 367
ApeKI	GCWGC	6 cut(s)	230, 997, 1073, 1148, 1163, 1166
ApoI	RAATTY	3 cut(s)	410, 654, 923
Asp700I	GAANNNNTTC	1 cut(s)	1106
AspLEI	GCGC	2 cut(s)	294, 330
AspS9I	GGNCC	2 cut(s)	556, 1041
AsuC2I	CCSGG	2 cut(s)	338, 801
AsuHPI	GGTGA	2 cut(s)	120, 959
AvaII	GGWCC	2 cut(s)	556, 1041
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	6 cut(s)	217, 984, 1085, 1135, 1150, 1178
BccI	CCATC	3 cut(s)	43, 668, 913
BceAI	ACGGC	1 cut(s)	188
BcnI	CCSGG	2 cut(s)	338, 801
BcoDI	GTCTC	2 cut(s)	327, 1115
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	1164
BfrI	CTTAAG	1 cut(s)	620
BglII	AGATCT	2 cut(s)	550, 1190
BisI	GCNGC	8 cut(s)	106, 109, 231, 998, 1074, 1149, 1164, 1167
BlsI	GCNGC	8 cut(s)	107, 110, 232, 999, 1075, 1150, 1165, 1168
Bme1390I	CCNGG	2 cut(s)	338, 801
Bme18I	GGWCC	2 cut(s)	556, 1041
BmgT120I	GGNCC	2 cut(s)	556, 1041
BmiI	GGNNCC	3 cut(s)	65, 288, 382
BmrFI	CCNGG	2 cut(s)	338, 801
BmsI	GCATC	3 cut(s)	168, 350, 739
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpuEI	CTTGAG	3 cut(s)	210, 569, 1053
BpuMI	CCSGG	2 cut(s)	338, 801
BsaI	GGTCTC	1 cut(s)	1115
BsaWI	WCCGGW	2 cut(s)	283, 1239
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 266, 376
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	857
BseAI	TCCGGA	1 cut(s)	283
BseGI	GGATG	4 cut(s)	30, 517, 679, 1083
BseLI	CCNNNNNNNGG	3 cut(s)	179, 266, 376
BseMI	GCAATG	1 cut(s)	857
BseMII	CTCAG	6 cut(s)	328, 338, 561, 834, 1110, 1185
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	3 cut(s)	76, 115, 1194
BseXI	GCAGC	6 cut(s)	217, 984, 1085, 1135, 1150, 1178
BseYI	CCCAGC	1 cut(s)	1076
BsgI	GTGCAG	1 cut(s)	1047
Bsh1236I	CGCG	3 cut(s)	292, 330, 429
BshFI	GGCC	3 cut(s)	105, 168, 369
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	5 cut(s)	156, 284, 338, 801, 1240
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	179, 266, 376
BsmAI	GTCTC	2 cut(s)	327, 1115
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	105, 168, 369
Bso31I	GGTCTC	1 cut(s)	1115
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	3 cut(s)	106, 109, 290
BspANI	GGCC	3 cut(s)	105, 168, 369
BspCNI	CTCAG	6 cut(s)	327, 337, 560, 835, 1111, 1186
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	3 cut(s)	292, 330, 429
BspLI	GGNNCC	3 cut(s)	65, 288, 382
BspMAI	CTGCAG	1 cut(s)	1168
BspPI	GGATC	3 cut(s)	281, 294, 497
BspT107I	GGYRCC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	1115
BsrDI	GCAATG	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
Bst4CI	ACNGT	2 cut(s)	986, 1126
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	157, 367, 663, 740
BstDEI	CTNAG	7 cut(s)	314, 324, 532, 547, 843, 1119, 1194
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	4 cut(s)	30, 517, 679, 1083
BstFNI	CGCG	3 cut(s)	292, 330, 429
BstHHI	GCGC	2 cut(s)	294, 330
BstKTI	GATC	8 cut(s)	138, 289, 313, 505, 553, 692, 790, 1193
BstMAI	GTCTC	2 cut(s)	327, 1115
BstMBI	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 230, 776, 1070
BstSCI	CCNGG	2 cut(s)	336, 799
BstSFI	CTRYAG	1 cut(s)	1164
BstUI	CGCG	3 cut(s)	292, 330, 429
BstV1I	GCAGC	6 cut(s)	217, 984, 1085, 1135, 1150, 1178
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	3 cut(s)	286, 550, 1190
BstYI	RGATCY	3 cut(s)	286, 550, 1190
BsuRI	GGCC	3 cut(s)	105, 168, 369
BtsCI	GGATG	4 cut(s)	30, 517, 679, 1083
BtsIMutI	CAGTG	2 cut(s)	824, 991
BtuMI	TCGCGA	1 cut(s)	429
Cac8I	GCNNGC	4 cut(s)	157, 367, 663, 740
CfoI	GCGC	2 cut(s)	294, 330
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	556, 1041
Csp6I	GTAC	4 cut(s)	249, 302, 1002, 1214
CviAII	CATG	6 cut(s)	79, 142, 485, 670, 815, 1038
CviQI	GTAC	4 cut(s)	249, 302, 1002, 1214
DdeI	CTNAG	7 cut(s)	314, 324, 532, 547, 843, 1119, 1194
DpnI	GATC	8 cut(s)	137, 288, 312, 504, 552, 691, 789, 1192
DpnII	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	1115
Eco47I	GGWCC	2 cut(s)	556, 1041
Eco57I	CTGAAG	3 cut(s)	431, 930, 999
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	654
FaeI	CATG	6 cut(s)	82, 145, 488, 673, 818, 1041
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	6 cut(s)	78, 141, 484, 669, 814, 1037
Fnu4HI	GCNGC	8 cut(s)	106, 109, 231, 998, 1074, 1149, 1164, 1167
FokI	GGATG	4 cut(s)	17, 524, 686, 1070
Fsp4HI	GCNGC	8 cut(s)	106, 109, 231, 998, 1074, 1149, 1164, 1167
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	2 cut(s)	293, 329
GluI	GCNGC	8 cut(s)	106, 109, 231, 998, 1074, 1149, 1164, 1167
GsaI	CCCAGC	1 cut(s)	1080
HaeIII	GGCC	3 cut(s)	105, 168, 369
HapII	CCGG	5 cut(s)	156, 284, 338, 801, 1240
HhaI	GCGC	2 cut(s)	294, 330
Hin1II	CATG	6 cut(s)	82, 145, 488, 673, 818, 1041
Hin6I	GCGC	2 cut(s)	292, 328
HinP1I	GCGC	2 cut(s)	292, 328
HpaII	CCGG	5 cut(s)	156, 284, 338, 801, 1240
HphI	GGTGA	2 cut(s)	120, 959
Hpy166II	GTNNAC	3 cut(s)	189, 436, 1157
Hpy188III	TCNNGA	5 cut(s)	284, 428, 554, 586, 1017
Hpy8I	GTNNAC	3 cut(s)	189, 436, 1157
Hpy99I	CGWCG	3 cut(s)	167, 182, 209
HpyAV	CCTTC	5 cut(s)	214, 502, 1018, 1096, 1214
HpyCH4III	ACNGT	2 cut(s)	986, 1126
HpyCH4IV	ACGT	2 cut(s)	177, 1248
HpyCH4V	TGCA	6 cut(s)	21, 278, 850, 1052, 1064, 1166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 230, 776, 1070
HpyF3I	CTNAG	7 cut(s)	314, 324, 532, 547, 843, 1119, 1194
HpySE526I	ACGT	2 cut(s)	177, 1248
Hsp92II	CATG	6 cut(s)	82, 145, 488, 673, 818, 1041
HspAI	GCGC	2 cut(s)	292, 328
Kpn2I	TCCGGA	1 cut(s)	283
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
LmnI	GCTCC	2 cut(s)	63, 349
Lsp1109I	GCAGC	6 cut(s)	217, 984, 1085, 1135, 1150, 1178
LweI	GCATC	3 cut(s)	168, 350, 739
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	177, 1248
MaeIII	GTNAC	2 cut(s)	694, 862
MalI	GATC	8 cut(s)	137, 288, 312, 504, 552, 691, 789, 1192
MboI	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
MboII	GAAGA	4 cut(s)	32, 79, 479, 923
MflI	RGATCY	3 cut(s)	286, 550, 1190
MluCI	AATT	6 cut(s)	235, 410, 654, 867, 899, 923
MlyI	GAGTC	3 cut(s)	93, 431, 893
MmeI	TCCRAC	1 cut(s)	160
MroI	TCCGGA	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	1106
MseI	TTAA	6 cut(s)	95, 375, 621, 701, 1187, 1245
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	1076
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	5 cut(s)	156, 284, 338, 801, 1240
MspR9I	CCNGG	2 cut(s)	338, 801
MvnI	CGCG	3 cut(s)	292, 330, 429
MwoI	GCNNNNNNNGC	4 cut(s)	165, 230, 776, 1070
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	2 cut(s)	338, 801
NdeII	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	6 cut(s)	82, 145, 488, 673, 818, 1041
NlaIV	GGNNCC	3 cut(s)	65, 288, 382
NmuCI	GTSAC	1 cut(s)	694
NruI	TCGCGA	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	1106
PfeI	GAWTC	7 cut(s)	605, 629, 719, 782, 808, 832, 932
PflFI	GACNNNGTC	1 cut(s)	1126
PkrI	GCNGC	8 cut(s)	107, 110, 232, 999, 1075, 1150, 1165, 1168
PleI	GAGTC	3 cut(s)	92, 431, 892
PpsI	GAGTC	3 cut(s)	92, 431, 892
Psp1406I	AACGTT	1 cut(s)	1248
PspFI	CCCAGC	1 cut(s)	1076
PspN4I	GGNNCC	3 cut(s)	65, 288, 382
PspPI	GGNCC	2 cut(s)	556, 1041
PstI	CTGCAG	1 cut(s)	1168
PsuI	RGATCY	3 cut(s)	286, 550, 1190
PsyI	GACNNNGTC	1 cut(s)	1126
PvuII	CAGCTG	1 cut(s)	1076
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	4 cut(s)	250, 303, 1003, 1215
RsaNI	GTAC	4 cut(s)	249, 302, 1002, 1214
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	6 cut(s)	95, 375, 621, 701, 1187, 1245
SatI	GCNGC	8 cut(s)	106, 109, 231, 998, 1074, 1149, 1164, 1167
Sau3AI	GATC	8 cut(s)	135, 286, 310, 502, 550, 689, 787, 1190
Sau96I	GGNCC	2 cut(s)	556, 1041
SchI	GAGTC	3 cut(s)	93, 431, 893
ScrFI	CCNGG	2 cut(s)	338, 801
SfaNI	GCATC	3 cut(s)	168, 350, 739
SfcI	CTRYAG	1 cut(s)	1164
SinI	GGWCC	2 cut(s)	556, 1041
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	4 cut(s)	225, 584, 620, 1068
SmoI	CTYRAG	4 cut(s)	225, 584, 620, 1068
Sse9I	AATT	6 cut(s)	235, 410, 654, 867, 899, 923
SsiI	CCGC	3 cut(s)	106, 109, 290
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	336, 799
TaaI	ACNGT	2 cut(s)	986, 1126
TaiI	ACGT	2 cut(s)	180, 1251
TaqI	TCGA	3 cut(s)	7, 882, 1114
TasI	AATT	6 cut(s)	235, 410, 654, 867, 899, 923
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	2 cut(s)	108, 111
TfiI	GAWTC	7 cut(s)	605, 629, 719, 782, 808, 832, 932
Tru1I	TTAA	6 cut(s)	95, 375, 621, 701, 1187, 1245
Tru9I	TTAA	6 cut(s)	95, 375, 621, 701, 1187, 1245
TscAI	CASTG	2 cut(s)	831, 991
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	6 cut(s)	230, 997, 1073, 1148, 1163, 1166
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	6 cut(s)	68, 473, 732, 764, 845, 1099
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	2 cut(s)	831, 991
Tth111I	GACNNNGTC	1 cut(s)	1126
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	2 cut(s)	556, 1041
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	410, 654, 923
XmnI	GAANNNNTTC	1 cut(s)	1106
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.