Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011370.1

Orthogroup ID

OG0006086

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3410

Gene Structure 3410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011370.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1054 bp

atggctcgaatatcactatgcaatcaactaatcccttcccttcttgttccaatgaagcagaggaaccactatcagctcatgggagtcataggcttaaccagagggcgccgcttctctgcttcttcctcacccaagattagcatgagcctcaaagccggcatcgtcggcctccctaacgtcggaaagtccacgcttttcaacgccgtcgttgagaatgggaaggctcaagctgccaattttccgttttgtacgatagagccaaatgtagggattgttgcagttccggatccgcgcctgaatgtactttctgatctcagcaagtctcagcgcgtagtcccggcatctttggagcttgtggatattgctggccttgtgaagggtgctagtcaaggagaggggttggggaataaattcttgtcaaatattcgcgaggtggactccattcttcaggtagttcgatgttttgaagataatgatgttgttcacgtgaatgggaaagttgatcctaaggatgatattgatgttatcaacttagagctgattttctcagatctggaccagattgagaaaagaatggagaagctcaagaaaagcaagacaaaagattcacaatccaaacttaaggaggaatcagaaaggtctggcttggagagaattcagcaggcactcatggatgggaaaccagcacgatcagtcactttaacagattcagaaaatgaatctataaagcatctgtgcttgcttacaatgaaacctgttatctatgttgctaatgttactgaatctgatctagctgaacctggagagaatcctcatgtcaaagaagtgatgaatcttgcttctgagttgcaatgtggactagtaacaatttcagcacaggttgagtctgaacttactgaactaccatctgaagaaagaacagaatttttggaatctcttggtgttagtgaaagtggtctcggaaaccttatcagagcaacatatggtgttttggggctccgtacttactttacttcaggagagaaggaaacaaaagcatggaccattcttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

351

Amino Acids

38.32

Weight (kDa)

5.5

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56050
fragaria_vesca	FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830
malus_domestica	MD10G1202000.v1.1
prunus_persica	Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1
pyrus_communis	pycom10g17280
rosa_chinensis	RchiOBHm_Chr5g0026631
rosa_laevigata	RLG00000032941
rosa_multiflora	Rmu_sc0004490.1_g000004 Rmu_sc0011370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052840
rosa_rugosa	Rorug05G0094300 Rorug05G0094400 Rorug05G0094500
rosa_samantha	Rh5CG204200 Rh5DG186600
rosa_wichuraiana	Rw5G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	105
AccII	CGCG	3 cut(s)	292, 330, 429
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	2 cut(s)	109, 290
AclWI	GGATC	3 cut(s)	281, 294, 497
AcsI	RAATTY	3 cut(s)	410, 654, 923
AcuI	CTGAAG	3 cut(s)	431, 930, 999
AcvI	CACGTG	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	3 cut(s)	250, 303, 1003
AfiI	CCNNNNNNNGG	3 cut(s)	179, 266, 376
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	199, 467
AhlI	ACTAGT	1 cut(s)	859
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	6 cut(s)	76, 230, 352, 538, 583, 794
AluI	AGCT	6 cut(s)	76, 230, 352, 538, 583, 794
Alw26I	GTCTC	2 cut(s)	327, 962
AlwI	GGATC	3 cut(s)	281, 294, 497
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	166, 367
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	3 cut(s)	410, 654, 923
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	3 cut(s)	108, 294, 330
AspS9I	GGNCC	2 cut(s)	556, 1041
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	556, 1041
AxyI	CCTNAGG	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	999
BbrPI	CACGTG	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	668, 913
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	801
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	327, 962
BcuI	ACTAGT	1 cut(s)	859
BfaI	CTAG	3 cut(s)	384, 791, 860
BfoI	RGCGCY	1 cut(s)	109
BfrI	CTTAAG	1 cut(s)	620
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	2 cut(s)	109, 231
BlsI	GCNGC	2 cut(s)	110, 232
Bme1390I	CCNGG	2 cut(s)	338, 801
Bme18I	GGWCC	2 cut(s)	556, 1041
BmgT120I	GGNCC	2 cut(s)	556, 1041
BmiI	GGNNCC	4 cut(s)	65, 107, 288, 998
BmrFI	CCNGG	2 cut(s)	338, 801
BmsI	GCATC	3 cut(s)	168, 350, 739
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpmI	CTGGAG	1 cut(s)	822
BpuEI	CTTGAG	2 cut(s)	210, 569
BpuMI	CCSGG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	962
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 266, 376
Bse118I	RCCGGY	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	857
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	801
BseGI	GGATG	2 cut(s)	517, 679
BseLI	CCNNNNNNNGG	3 cut(s)	179, 266, 376
BseMI	GCAATG	1 cut(s)	857
BseMII	CTCAG	4 cut(s)	328, 338, 561, 834
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	3 cut(s)	292, 330, 429
BshFI	GGCC	2 cut(s)	168, 369
BshNI	GGYRCC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	156, 284, 338
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	179, 266, 376
BsmAI	GTCTC	2 cut(s)	327, 962
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	168, 369
Bso31I	GGTCTC	1 cut(s)	962
Bsp1286I	GDGCHC	1 cut(s)	999
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	2 cut(s)	109, 290
BspANI	GGCC	2 cut(s)	168, 369
BspCNI	CTCAG	4 cut(s)	327, 337, 560, 835
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	3 cut(s)	292, 330, 429
BspLI	GGNNCC	4 cut(s)	65, 107, 288, 998
BspPI	GGATC	3 cut(s)	281, 294, 497
BspT107I	GGYRCC	1 cut(s)	105
BspTI	CTTAAG	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
BssNI	GRCGYC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	801
BstACI	GRCGYC	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	4 cut(s)	157, 367, 663, 740
BstDEI	CTNAG	6 cut(s)	314, 324, 507, 532, 547, 843
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	517, 679
BstFNI	CGCG	3 cut(s)	292, 330, 429
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	3 cut(s)	108, 294, 330
BstKTI	GATC	6 cut(s)	289, 313, 505, 553, 692, 790
BstMAI	GTCTC	2 cut(s)	327, 962
BstMBI	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 230
BstNI	CCWGG	1 cut(s)	801
BstSCI	CCNGG	2 cut(s)	336, 799
BstUI	CGCG	3 cut(s)	292, 330, 429
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	286, 550
BstYI	RGATCY	2 cut(s)	286, 550
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	168, 369
BtsCI	GGATG	2 cut(s)	517, 679
BtuMI	TCGCGA	1 cut(s)	429
Cac8I	GCNNGC	4 cut(s)	157, 367, 663, 740
CfoI	GCGC	3 cut(s)	108, 294, 330
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	556, 1041
Csp6I	GTAC	3 cut(s)	249, 302, 1002
CviAII	CATG	5 cut(s)	79, 142, 670, 815, 1038
CviQI	GTAC	3 cut(s)	249, 302, 1002
DdeI	CTNAG	6 cut(s)	314, 324, 507, 532, 547, 843
DinI	GGCGCC	1 cut(s)	107
DpnI	GATC	6 cut(s)	288, 312, 504, 552, 691, 789
DpnII	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
Eco24I	GRGCYC	1 cut(s)	999
Eco31I	GGTCTC	1 cut(s)	962
Eco47I	GGWCC	2 cut(s)	556, 1041
Eco57I	CTGAAG	3 cut(s)	431, 930, 999
Eco72I	CACGTG	1 cut(s)	487
Eco81I	CCTNAGG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	999
EgeI	GGCGCC	1 cut(s)	107
EheI	GGCGCC	1 cut(s)	107
FaeI	CATG	5 cut(s)	82, 145, 673, 818, 1041
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	5 cut(s)	78, 141, 669, 814, 1037
FauNDI	CATATG	1 cut(s)	982
Fnu4HI	GCNGC	2 cut(s)	109, 231
FokI	GGATG	2 cut(s)	524, 686
FriOI	GRGCYC	1 cut(s)	999
Fsp4HI	GCNGC	2 cut(s)	109, 231
FspBI	CTAG	3 cut(s)	384, 791, 860
GlaI	GCGC	3 cut(s)	107, 293, 329
GluI	GCNGC	2 cut(s)	109, 231
GsuI	CTGGAG	1 cut(s)	822
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	168, 369
HapII	CCGG	3 cut(s)	156, 284, 338
HhaI	GCGC	3 cut(s)	108, 294, 330
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	5 cut(s)	82, 145, 673, 818, 1041
Hin6I	GCGC	3 cut(s)	106, 292, 328
HinP1I	GCGC	3 cut(s)	106, 292, 328
HpaII	CCGG	3 cut(s)	156, 284, 338
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	4 cut(s)	189, 436, 484, 857
Hpy188III	TCNNGA	5 cut(s)	284, 428, 554, 586, 1017
Hpy8I	GTNNAC	4 cut(s)	189, 436, 484, 857
Hpy99I	CGWCG	3 cut(s)	167, 182, 209
HpyAV	CCTTC	5 cut(s)	45, 50, 214, 370, 1018
HpyCH4IV	ACGT	2 cut(s)	177, 486
HpyCH4V	TGCA	4 cut(s)	21, 278, 850, 1052
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 230
HpyF3I	CTNAG	6 cut(s)	314, 324, 507, 532, 547, 843
HpySE526I	ACGT	2 cut(s)	177, 486
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	5 cut(s)	82, 145, 673, 818, 1041
HspAI	GCGC	3 cut(s)	106, 292, 328
KasI	GGCGCC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	283
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
LmnI	GCTCC	2 cut(s)	349, 1002
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	3 cut(s)	168, 350, 739
MaeI	CTAG	3 cut(s)	384, 791, 860
MaeII	ACGT	2 cut(s)	177, 486
MaeIII	GTNAC	3 cut(s)	694, 775, 862
MalI	GATC	6 cut(s)	288, 312, 504, 552, 691, 789
MboI	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
MboII	GAAGA	4 cut(s)	114, 437, 479, 923
MflI	RGATCY	2 cut(s)	286, 550
MhlI	GDGCHC	1 cut(s)	999
MluCI	AATT	5 cut(s)	235, 410, 654, 867, 923
Mly113I	GGCGCC	1 cut(s)	106
MlyI	GAGTC	3 cut(s)	93, 431, 893
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	9 cut(s)	54, 95, 136, 158, 179, 388, 424, 619, 822
MroI	TCCGGA	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	3 cut(s)	95, 621, 701
MslI	CAYNNNNRTG	1 cut(s)	489
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	3 cut(s)	156, 284, 338
MspR9I	CCNGG	2 cut(s)	338, 801
MvaI	CCWGG	1 cut(s)	801
MvnI	CGCG	3 cut(s)	292, 330, 429
MwoI	GCNNNNNNNGC	2 cut(s)	165, 230
NaeI	GCCGGC	1 cut(s)	157
NarI	GGCGCC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	982
NdeII	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	82, 145, 673, 818, 1041
NlaIV	GGNNCC	4 cut(s)	65, 107, 288, 998
NmuCI	GTSAC	1 cut(s)	694
NruI	TCGCGA	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	8 cut(s)	605, 629, 707, 719, 782, 808, 832, 932
PkrI	GCNGC	2 cut(s)	110, 232
PleI	GAGTC	3 cut(s)	92, 431, 892
PluTI	GGCGCC	1 cut(s)	109
PmaCI	CACGTG	1 cut(s)	487
PmlI	CACGTG	1 cut(s)	487
PpsI	GAGTC	3 cut(s)	92, 431, 892
Ppu21I	YACGTR	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	799
PspCI	CACGTG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	4 cut(s)	65, 107, 288, 998
PspPI	GGNCC	2 cut(s)	556, 1041
PsuI	RGATCY	2 cut(s)	286, 550
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	3 cut(s)	250, 303, 1003
RsaNI	GTAC	3 cut(s)	249, 302, 1002
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	95, 621, 701
SatI	GCNGC	2 cut(s)	109, 231
Sau3AI	GATC	6 cut(s)	286, 310, 502, 550, 689, 787
Sau96I	GGNCC	2 cut(s)	556, 1041
SchI	GAGTC	3 cut(s)	93, 431, 893
ScrFI	CCNGG	2 cut(s)	338, 801
SduI	GDGCHC	1 cut(s)	999
SfaNI	GCATC	3 cut(s)	168, 350, 739
SfoI	GGCGCC	1 cut(s)	107
SinI	GGWCC	2 cut(s)	556, 1041
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	3 cut(s)	225, 584, 620
SmoI	CTYRAG	3 cut(s)	225, 584, 620
SpeI	ACTAGT	1 cut(s)	859
Sse9I	AATT	5 cut(s)	235, 410, 654, 867, 923
SsiI	CCGC	2 cut(s)	109, 290
SspDI	GGCGCC	1 cut(s)	105
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	3 cut(s)	384, 791, 860
StyD4I	CCNGG	2 cut(s)	336, 799
TaiI	ACGT	2 cut(s)	180, 489
TaqI	TCGA	2 cut(s)	7, 457
TasI	AATT	5 cut(s)	235, 410, 654, 867, 923
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	8 cut(s)	605, 629, 707, 719, 782, 808, 832, 932
Tru1I	TTAA	3 cut(s)	95, 621, 701
Tru9I	TTAA	3 cut(s)	95, 621, 701
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	68, 732, 764, 845
TspGWI	ACGGA	2 cut(s)	231, 989
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	2 cut(s)	556, 1041
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	410, 654, 923
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	3 cut(s)	384, 791, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.