Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006086

Physical Location & Seq

Genomic Coordinates Reverse (-)

8417959 .. 8420415

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0094400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGACAATGGAGTTGTCTTCTGTGTATTTAGGTTTCAGTGTTGCAGCTGGAATTGCTGGTAATGTCTTTGCATTTGTGTTGTTTGTCTCACCAATACCAACATTTAAGAGAATCATCCGAAACAAGTCAACGGAACAATTCTCAGGATTGCCTTACATATATGCCTTTTTGAATTGCTTGATATGCCTCTGGTATGGCTCGCCTGCTGTGAAGACTGGGATCATATTGGTGGCTACAGTCAATTCATTTGGGGCAGTTTTCCAGTTAATCTACATAAGCATTTTCATCGCTTATGCTGAAAAAGAAATTAAGGTGAGGATGCTGGGATTGCTACTGGTAGTTCTTGCTATTTTTGGATTGATAGTCTATGTGAGCTTAAGAGTTTTAGACTATGATGGAAGGCAGACATTTGTCGGATATTTGAGTGTTTTTTCACTTATCTCAATGTTTGCTTCGCCGCTGTTTATCATAAAATTGGTGATAAAAACAAGGAGCGTCGAGTTCATGCCATTCTATCTTTCTCTTGCAACCTTCTTGATGAGTCTCTCTTTCTCTGCATACGGAGTGTTCAAGGAAGATCCATTCCTATATTTTCCGAATGGTATTGGAACAATTTTGGCTATTGTCCAATTGGCTTTGTACTTCTACTACAGCAGTCTATCTAAGAAAGACTTGAGAGAACCCTTGATAGTTAGATATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

235

Amino Acids

26.42

Weight (kDa)

9.33

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	1.2e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 220	2.2e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56050
fragaria_vesca	FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830 FvH4_3g15830
malus_domestica	MD10G1202000.v1.1
prunus_persica	Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1 Prupe.4G140300_v2.0.a1
pyrus_communis	pycom10g17280
rosa_chinensis	RchiOBHm_Chr5g0026631
rosa_laevigata	RLG00000032941
rosa_multiflora	Rmu_sc0004490.1_g000004 Rmu_sc0011370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052840
rosa_rugosa	Rorug05G0094300 Rorug05G0094400 Rorug05G0094500
rosa_samantha	Rh5CG204200 Rh5DG186600
rosa_wichuraiana	Rw5G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	2 cut(s)	230, 575
AfaI	GTAC	1 cut(s)	644
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	175, 574
AluBI	AGCT	2 cut(s)	50, 378
AluI	AGCT	2 cut(s)	50, 378
Alw26I	GTCTC	2 cut(s)	94, 551
AlwI	GGATC	2 cut(s)	230, 575
ApeKI	GCWGC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	84, 328, 493
BbsI	GAAGAC	2 cut(s)	12, 221
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	392
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcoDI	GTCTC	2 cut(s)	94, 551
BfmI	CTRYAG	2 cut(s)	237, 652
BfrI	CTTAAG	1 cut(s)	379
BisI	GCNGC	2 cut(s)	48, 461
BlsI	GCNGC	2 cut(s)	49, 462
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	12, 221
BpuEI	CTTGAG	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	223, 265, 342
BseGI	GGATG	2 cut(s)	117, 327
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	3 cut(s)	223, 265, 342
BseXI	GCAGC	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	94, 551
Bsp143I	GATC	2 cut(s)	222, 580
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	158
BspPI	GGATC	2 cut(s)	230, 575
BspTI	CTTAAG	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	223, 265, 342
BssMI	GATC	2 cut(s)	222, 580
Bst4CI	ACNGT	1 cut(s)	241
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	203, 207
BstDEI	CTNAG	2 cut(s)	145, 666
BstF5I	GGATG	2 cut(s)	117, 327
BstKTI	GATC	2 cut(s)	225, 583
BstMAI	GTCTC	2 cut(s)	94, 551
BstMBI	GATC	2 cut(s)	222, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSFI	CTRYAG	2 cut(s)	237, 652
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	12, 221
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	117, 327
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	203, 207
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	6 cut(s)	50, 201, 236, 378, 623, 638
CviKI_1	RGCY	6 cut(s)	50, 201, 236, 378, 623, 638
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	145, 666
DpnI	GATC	2 cut(s)	224, 582
DpnII	GATC	2 cut(s)	222, 580
FaeI	CATG	1 cut(s)	511
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	48, 461
FokI	GGATG	2 cut(s)	104, 334
Fsp4HI	GCNGC	2 cut(s)	48, 461
GluI	GCNGC	2 cut(s)	48, 461
GsaI	CCCAGC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	487
Hin1II	CATG	1 cut(s)	511
HincII	GTYRAC	2 cut(s)	6, 132
HindII	GTYRAC	2 cut(s)	6, 132
HinfI	GANTC	2 cut(s)	114, 544
HphI	GGTGA	3 cut(s)	84, 328, 493
Hpy166II	GTNNAC	2 cut(s)	6, 132
Hpy188I	TCNGA	3 cut(s)	122, 419, 600
Hpy188III	TCNNGA	2 cut(s)	147, 538
Hpy8I	GTNNAC	2 cut(s)	6, 132
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	396, 544
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	47, 74, 530, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
HpyF3I	CTNAG	2 cut(s)	145, 666
Hsp92II	CATG	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	222, 580
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	36, 45, 132, 178, 204, 219, 278, 311, 323
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	312
MalI	GATC	2 cut(s)	224, 582
MboI	GATC	2 cut(s)	222, 580
MboII	GAAGA	3 cut(s)	12, 226, 590
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	2 cut(s)	200, 312
MseI	TTAA	4 cut(s)	108, 269, 312, 380
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	50, 463
MspCI	CTTAAG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
NdeII	GATC	2 cut(s)	222, 580
NlaIII	CATG	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	49, 462
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PshAI	GACNNNNGTC	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	108, 269, 312, 380
SatI	GCNGC	2 cut(s)	48, 461
Sau3AI	GATC	2 cut(s)	222, 580
SchI	GAGTC	1 cut(s)	553
SetI	ASST	5 cut(s)	37, 52, 318, 380, 536
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	2 cut(s)	237, 652
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	379, 676
SmoI	CTYRAG	2 cut(s)	379, 676
Sse9I	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
SsiI	CCGC	1 cut(s)	461
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	108, 269, 312, 380
Tru9I	TTAA	4 cut(s)	108, 269, 312, 380
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	237, 277, 496
TspGWI	ACGGA	2 cut(s)	149, 579
TspRI	CASTG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.