Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009298

Physical Location & Seq

Genomic Coordinates Reverse (-)

21092993 .. 21094518

Gene Structure 1526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56345.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTCCCTGCTTCGAAACTTCTTCTCCTTCACCTTCTCTGCAAATTCAATAATCACAAAACCCTATTTTGCAATCCCAATCAAAGCCATGGAAGCTACCTCTGAACTCAATCTCAATTACCCAAAACCCATATCAGCTCCTCCACCTCCAATCTCCAAAGACATTGAACTCAGAAGAGCAATGGAAGCTTCATCAAAATCAAGTCTCTTCAATCTTACAAGAGACGATATACTATACGAAGACGAATACCTAATGGCTGTGAATAAACCAAAAGGTGTTTATTGTGAAGCTGTTCTTCGCTCTGCTCCTCAAATTGTTCTTGATTCTTCGAGTGAGTATCATTTAGCGAATAGATTAGATCGTGATACTAGTGGTGTAATGATTATTACTAAGTCACATAAAGTCGCTGCTAAGCTTGTTAAGGCATTCACAGAACATAAGATTCGTAAATCATACATTGCTCTTTGTATTGGTTCATCTCCAAATTGGAGGAGGGTCACGGTTAGTTCAGGTCATGGACGGTCGAAACACGGAGCTTGGCGGGTTTACGCTGCGTTAGACGTTGGTAGAGTTTTACCTGGTGGATCTTTTGTTAGAGATATGGAGACAACGTTTGAAGTTGTATCTGTAAACAGTGTGAAAAACGAATCTTGTGAACTGGAAGATGTGAATCATGTGATTGTTGCTGAGGGGGAGAGGGAATTGAGTTGTGGTGGAGATGATGATGATGTTGTTGTTGTGGTTAGGGCGTTTCCGCGAAGTGGGAGGACGCATCAGATTAGGTTACATTGTCAGTATCTTGGGATTCCTATTAGAGGAGATGTTAAGTATCATGGAGTGTATGAGTGGAATGGAAGAACATTTGAGGGGCATGAGCTTCACGCTGAGTGTTTATCGTTAGATCATCCGGTTACGGGTGATTCTATTGTTATTCGAGCTCCTCTTCCGTATTGGGCAGCCGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

322

Amino Acids

35.89

Weight (kDa)

6.87

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56345 AT1G56345
fragaria_vesca	FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380
malus_domestica	MD12G1206400.v1.1
prunus_persica	Prupe.6G313700_v2.0.a1
pyrus_communis	pycom12g19430
rosa_chinensis	RchiOBHm_Chr3g0456981
rosa_laevigata	RLG00000025256
rosa_multiflora	Rmu_sc0016008.1_g000006 Rmu_sc0039874.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422300
rosa_rugosa	Rorug03G0018000
rosa_samantha	Rh3AG078000 Rh3BG079800 Rh3CG079700 Rh3DG081500
rosa_wichuraiana	Rw3G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	757
AciI	CCGC	2 cut(s)	541, 755
AclI	AACGTT	1 cut(s)	611
AclWI	GGATC	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	761, 815, 914
AgsI	TTSAA	4 cut(s)	48, 167, 211, 617
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	8 cut(s)	95, 137, 188, 290, 415, 536, 877, 938
AluI	AGCT	8 cut(s)	95, 137, 188, 290, 415, 536, 877, 938
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	3 cut(s)	209, 216, 599
AlwI	GGATC	1 cut(s)	592
ApeKI	GCWGC	3 cut(s)	407, 551, 956
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	22, 929
AsuII	TTCGAA	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	940
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	940
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	2 cut(s)	394, 538
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	3 cut(s)	209, 216, 599
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	408, 552, 957
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	409, 553, 958
Bme1390I	CCNGG	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	907
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 596, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	761, 815, 914
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	2 cut(s)	186, 456
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	904
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	761, 815, 914
BseMI	GCAATG	2 cut(s)	186, 456
BseMII	CTCAG	3 cut(s)	184, 678, 876
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	5 cut(s)	129, 297, 505, 831, 930
BseXI	GCAGC	2 cut(s)	394, 538
Bsh1236I	CGCG	1 cut(s)	757
Bsh1285I	CGRYCG	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	940
BsiSI	CCGG	2 cut(s)	908, 960
BslI	CCNNNNNNNGG	3 cut(s)	761, 815, 914
BsmAI	GTCTC	3 cut(s)	209, 216, 599
BsmBI	CGTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	425
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp143I	GATC	3 cut(s)	358, 584, 901
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	541, 755
BspCNI	CTCAG	3 cut(s)	183, 679, 877
BspFNI	CGCG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	186, 456
BsrI	ACTGG	1 cut(s)	663
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	358, 584, 901
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	502, 522, 635
Bst6I	CTCTTC	3 cut(s)	169, 212, 948
BstBI	TTCGAA	1 cut(s)	13
BstDEI	CTNAG	5 cut(s)	170, 390, 411, 687, 885
BstDSI	CCRYGG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	813
BstF5I	GGATG	1 cut(s)	904
BstFNI	CGCG	1 cut(s)	757
BstKTI	GATC	3 cut(s)	361, 587, 904
BstMAI	GTCTC	3 cut(s)	209, 216, 599
BstMBI	GATC	3 cut(s)	358, 584, 901
BstMCI	CGRYCG	1 cut(s)	524
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 185
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstUI	CGCG	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	394, 538
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	904
BtsIMutI	CAGTG	1 cut(s)	640
CseI	GACGC	1 cut(s)	778
CsiI	ACCWGGT	1 cut(s)	577
CviAII	CATG	5 cut(s)	88, 515, 674, 833, 872
DdeI	CTNAG	5 cut(s)	170, 390, 411, 687, 885
DpnI	GATC	3 cut(s)	360, 586, 903
DpnII	GATC	3 cut(s)	358, 584, 901
Eam1104I	CTCTTC	3 cut(s)	169, 212, 948
EarI	CTCTTC	3 cut(s)	169, 212, 948
Ecl136II	GAGCTC	1 cut(s)	938
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	940
Eco53kI	GAGCTC	1 cut(s)	938
EcoICRI	GAGCTC	1 cut(s)	938
EcoNI	CCTNNNNNAGG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	5 cut(s)	91, 518, 677, 836, 875
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	5 cut(s)	87, 514, 673, 832, 871
FauI	CCCGC	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	408, 552, 957
FokI	GGATG	1 cut(s)	891
FriOI	GRGCYC	1 cut(s)	940
Fsp4HI	GCNGC	3 cut(s)	408, 552, 957
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	3 cut(s)	408, 552, 957
HapII	CCGG	2 cut(s)	908, 960
HgaI	GACGC	1 cut(s)	778
Hin1II	CATG	5 cut(s)	91, 518, 677, 836, 875
HindIII	AAGCTT	2 cut(s)	186, 413
HinfI	GANTC	6 cut(s)	323, 442, 647, 670, 805, 920
HpaII	CCGG	2 cut(s)	908, 960
HphI	GGTGA	2 cut(s)	22, 929
Hpy166II	GTNNAC	3 cut(s)	547, 631, 656
Hpy188I	TCNGA	3 cut(s)	103, 173, 777
Hpy188III	TCNNGA	2 cut(s)	320, 362
Hpy8I	GTNNAC	3 cut(s)	547, 631, 656
HpyAV	CCTTC	2 cut(s)	37, 43
HpyCH4III	ACNGT	3 cut(s)	502, 522, 635
HpyCH4IV	ACGT	2 cut(s)	561, 611
HpyCH4V	TGCA	2 cut(s)	41, 71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 185
HpyF3I	CTNAG	5 cut(s)	170, 390, 411, 687, 885
HpySE526I	ACGT	2 cut(s)	561, 611
Hsp92II	CATG	5 cut(s)	91, 518, 677, 836, 875
Kzo9I	GATC	3 cut(s)	358, 584, 901
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	4 cut(s)	142, 310, 533, 943
LpnPI	CCDG	6 cut(s)	20, 495, 564, 591, 644, 921
Lsp1109I	GCAGC	2 cut(s)	394, 538
LweI	GCATC	1 cut(s)	781
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	2 cut(s)	561, 611
MaeIII	GTNAC	4 cut(s)	393, 496, 783, 910
MalI	GATC	3 cut(s)	360, 586, 903
MboI	GATC	3 cut(s)	358, 584, 901
MboII	GAAGA	9 cut(s)	13, 186, 199, 251, 287, 318, 674, 867, 935
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	5 cut(s)	43, 115, 312, 484, 701
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	420, 825
MspI	CCGG	2 cut(s)	908, 960
MspR9I	CCNGG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	1 cut(s)	757
MwoI	GCNNNNNNNGC	2 cut(s)	92, 185
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	358, 584, 901
NlaIII	CATG	5 cut(s)	91, 518, 677, 836, 875
NmuCI	GTSAC	2 cut(s)	393, 496
NspV	TTCGAA	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	6 cut(s)	323, 442, 647, 670, 805, 920
PkrI	GCNGC	3 cut(s)	409, 553, 958
Psp124BI	GAGCTC	1 cut(s)	940
Psp1406I	AACGTT	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	940
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	420, 825
SatI	GCNGC	3 cut(s)	408, 552, 957
Sau3AI	GATC	3 cut(s)	358, 584, 901
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	940
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	781
SfuI	TTCGAA	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	5 cut(s)	43, 115, 312, 484, 701
SsiI	CCGC	2 cut(s)	541, 755
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	940
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	502, 522, 635
TaiI	ACGT	2 cut(s)	564, 614
TaqI	TCGA	4 cut(s)	13, 329, 524, 934
TasI	AATT	5 cut(s)	43, 115, 312, 484, 701
TfiI	GAWTC	6 cut(s)	323, 442, 647, 670, 805, 920
Tru1I	TTAA	2 cut(s)	420, 825
Tru9I	TTAA	2 cut(s)	420, 825
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	2 cut(s)	393, 496
TseI	GCWGC	3 cut(s)	407, 551, 956
Tsp45I	GTSAC	2 cut(s)	393, 496
TspDTI	ATGAA	2 cut(s)	180, 465
TspGWI	ACGGA	2 cut(s)	546, 936
TspRI	CASTG	1 cut(s)	640
XagI	CCTNNNNNAGG	1 cut(s)	813
XapI	RAATTY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.