Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009298

Physical Location & Seq

Genomic Coordinates Reverse (-)

4429542 .. 4431784

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07380.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACAAAAATGTCCTCCCTTCTTGTTCTTCAACCCGTCAATGTCTTCGTCTTCTTCAACCCCAAAACCCTCACCAGCTTCCCCAAACCCTTCAATTTCCTCAGGTCAGTTACAATGTCAGACCAACCCAGTTCCCAAAATGCCCTCCAAATCTCACAAAATTACCCGGTGCCACTCTCCCCGCCTCTTCCGTTGATCTCAAAGAACATGGAACTGGCGAGAGCCATGTCGGCCTCTTCCAAATCAAGCCTCTTTACTCTATCGAGAAACGACGTCGTTTACGAGGATCAGTGGCTTATTGTAGTGAACAAGCCTCAGGGGATTTACTGTGAGACTGTGCTGGAATCGGTTCCTAAGCTCCTTGCCGAGTCAGCTGCAGGGTTGGAAGGGAAGGCACCGGAGATCCATCTTGCAAATAGACTGGATAGGGACACTAGTGGAGTAATGATCATAACCAAGTCGCATAAAGTAGCTGCCAAACTTGTTAAGGCGTTTACTGATCATAAAGTTTCGAAAACATACATTGCATGCTGCATTGGTTCAGCTCCGAAATGGGAAAGAATCACTGTTAAATCAGGTCATGGTCGGTCAAAGTTTGGGGCATGGAGGGTATATGCTGCTTCAGATGTAGGGAGGCCACTTCCAGGTGGATCGGTAGTCAGAGACATGGAGACATCGTTTGAAATTTTATCGATAAATGGACAAGGGTGCTTCAGAGAGCCATCTGAGTTTAGAATAGATGATGATAAGATCTTAGTGGTTGAAGAAAAAGCGGTAATAATAGATGGAGATGCAAAGAAGGATGAGATTCTGGTAATAGCACGTCCTCGGAGTGGAAGGACACACCAAATCCGGTTGCATTGCCAGTATCTTGGAATTTCGATAAGAGGGGATGTCAAGTATGAGGGTGTCTACGAGTGGAAAGGAACAACATATGGAGGTCATGAACTTCATGCAGAAAGCATGTCTTTGGACCACCCTATTACTGGTCTTCCTATATTGTTTCGAGCACCCCTACCATCTTGGGCCAACCAGTTGATTCAATTTGAAGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

353

Amino Acids

39.02

Weight (kDa)

8.83

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	99 - 287	5e-22	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56345 AT1G56345
fragaria_vesca	FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380
malus_domestica	MD12G1206400.v1.1
prunus_persica	Prupe.6G313700_v2.0.a1
pyrus_communis	pycom12g19430
rosa_chinensis	RchiOBHm_Chr3g0456981
rosa_laevigata	RLG00000025256
rosa_multiflora	Rmu_sc0016008.1_g000006 Rmu_sc0039874.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422300
rosa_rugosa	Rorug03G0018000
rosa_samantha	Rh3AG078000 Rh3BG079800 Rh3CG079700 Rh3DG081500
rosa_wichuraiana	Rw3G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AatII	GACGTC	1 cut(s)	276
AccB1I	GGYRCC	2 cut(s)	169, 394
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	2 cut(s)	182, 773
AclWI	GGATC	3 cut(s)	294, 397, 658
AcsI	RAATTY	2 cut(s)	684, 876
AcuI	CTGAAG	2 cut(s)	606, 697
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	644, 833, 986
AgsI	TTSAA	7 cut(s)	32, 58, 94, 683, 764, 1043, 1049
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	824
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	6 cut(s)	78, 358, 374, 473, 545, 1056
AluI	AGCT	6 cut(s)	78, 358, 374, 473, 545, 1056
Alw21I	GWGCWC	1 cut(s)	1012
Alw26I	GTCTC	3 cut(s)	326, 657, 665
AlwI	GGATC	3 cut(s)	294, 397, 658
AoxI	GGCC	3 cut(s)	231, 635, 1026
ApeKI	GCWGC	4 cut(s)	374, 473, 531, 617
ApoI	RAATTY	2 cut(s)	684, 876
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	973, 1026
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	973
AxyI	CCTNAGG	2 cut(s)	101, 315
BanI	GGYRCC	2 cut(s)	169, 394
BbsI	GAAGAC	3 cut(s)	37, 43, 983
Bbv12I	GWGCWC	1 cut(s)	1012
BbvI	GCAGC	4 cut(s)	361, 460, 518, 604
BccI	CCATC	4 cut(s)	414, 730, 779, 1027
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	645
BclI	TGATCA	2 cut(s)	447, 499
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	326, 657, 665
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	4 cut(s)	375, 474, 532, 618
BlsI	GCNGC	4 cut(s)	376, 475, 533, 619
Bme1390I	CCNGG	2 cut(s)	167, 645
Bme18I	GGWCC	1 cut(s)	973
BmgBI	CACGTC	1 cut(s)	824
BmgT120I	GGNCC	2 cut(s)	973, 1026
BmiI	GGNNCC	3 cut(s)	171, 351, 396
BmrFI	CCNGG	2 cut(s)	167, 645
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	781
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	3 cut(s)	37, 43, 983
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	827
BsaWI	WCCGGW	2 cut(s)	397, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	644, 833, 986
Bse1I	ACTGG	6 cut(s)	129, 219, 426, 865, 991, 1033
Bse21I	CCTNAGG	2 cut(s)	101, 315
Bse3DI	GCAATG	2 cut(s)	522, 859
BseBI	CCWGG	1 cut(s)	645
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	827
BseGI	GGATG	2 cut(s)	808, 898
BseLI	CCNNNNNNNGG	3 cut(s)	644, 833, 986
BseMI	GCAATG	2 cut(s)	522, 859
BseMII	CTCAG	3 cut(s)	115, 329, 717
BseNI	ACTGG	6 cut(s)	129, 219, 426, 865, 991, 1033
BseXI	GCAGC	4 cut(s)	361, 460, 518, 604
BshFI	GGCC	3 cut(s)	233, 637, 1028
BshNI	GGYRCC	2 cut(s)	169, 394
BshVI	ATCGAT	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	1012
BsiSI	CCGG	3 cut(s)	167, 398, 853
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	644, 833, 986
BsmAI	GTCTC	3 cut(s)	326, 657, 665
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	233, 637, 1028
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	1012
Bsp143I	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
BspACI	CCGC	2 cut(s)	182, 773
BspANI	GGCC	3 cut(s)	233, 637, 1028
BspCNI	CTCAG	3 cut(s)	114, 328, 718
BspDI	ATCGAT	1 cut(s)	692
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	3 cut(s)	171, 351, 396
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	3 cut(s)	294, 397, 658
BspT104I	TTCGAA	1 cut(s)	512
BspT107I	GGYRCC	2 cut(s)	169, 394
BsrDI	GCAATG	2 cut(s)	522, 859
BsrI	ACTGG	6 cut(s)	129, 219, 426, 865, 991, 1033
BssECI	CCNNGG	1 cut(s)	827
BssMI	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
BssNI	GRCGYC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	3 cut(s)	329, 337, 568
Bst6I	CTCTTC	2 cut(s)	192, 241
BstACI	GRCGYC	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	5 cut(s)	101, 315, 354, 726, 754
BstF5I	GGATG	2 cut(s)	808, 898
BstKTI	GATC	7 cut(s)	198, 289, 405, 450, 502, 653, 753
BstMAI	GTCTC	3 cut(s)	326, 657, 665
BstMBI	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 371
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	2 cut(s)	531, 967
BstSCI	CCNGG	2 cut(s)	165, 643
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	361, 460, 518, 604
BstV2I	GAAGAC	3 cut(s)	37, 43, 983
BstX2I	RGATCY	2 cut(s)	402, 750
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	2 cut(s)	402, 750
Bsu15I	ATCGAT	1 cut(s)	692
Bsu36I	CCTNAGG	2 cut(s)	101, 315
BsuRI	GGCC	3 cut(s)	233, 637, 1028
BsuTUI	ATCGAT	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	824
BtsCI	GGATG	2 cut(s)	808, 898
BtsIMutI	CAGTG	2 cut(s)	296, 564
Cac8I	GCNNGC	1 cut(s)	529
CciI	TCATGA	1 cut(s)	943
Cfr13I	GGNCC	2 cut(s)	973, 1026
ClaI	ATCGAT	1 cut(s)	692
CviAII	CATG	9 cut(s)	208, 226, 528, 581, 603, 667, 944, 953, 964
DdeI	CTNAG	5 cut(s)	101, 315, 354, 726, 754
DpnI	GATC	7 cut(s)	197, 288, 404, 449, 501, 652, 752
DpnII	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	192, 241
EarI	CTCTTC	2 cut(s)	192, 241
Eco47I	GGWCC	1 cut(s)	973
Eco57I	CTGAAG	2 cut(s)	606, 697
Eco81I	CCTNAGG	2 cut(s)	101, 315
EcoRII	CCWGG	1 cut(s)	643
FaeI	CATG	9 cut(s)	211, 229, 531, 584, 606, 670, 947, 956, 967
FalI	AAGNNNNNCTT	2 cut(s)	952, 984
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	9 cut(s)	207, 225, 527, 580, 602, 666, 943, 952, 963
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	934
FbaI	TGATCA	2 cut(s)	447, 499
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	4 cut(s)	375, 474, 532, 618
FokI	GGATG	2 cut(s)	815, 905
Fsp4HI	GCNGC	4 cut(s)	375, 474, 532, 618
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	4 cut(s)	375, 474, 532, 618
HaeIII	GGCC	3 cut(s)	233, 637, 1028
HapII	CCGG	3 cut(s)	167, 398, 853
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	9 cut(s)	211, 229, 531, 584, 606, 670, 947, 956, 967
HinfI	GANTC	5 cut(s)	344, 368, 561, 808, 1039
HpaII	CCGG	3 cut(s)	167, 398, 853
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	4 cut(s)	280, 307, 495, 913
Hpy188I	TCNGA	7 cut(s)	121, 549, 625, 662, 716, 727, 831
Hpy188III	TCNNGA	2 cut(s)	264, 944
Hpy8I	GTNNAC	4 cut(s)	280, 307, 495, 913
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	7 cut(s)	29, 100, 380, 385, 793, 831, 1043
HpyCH4III	ACNGT	3 cut(s)	329, 337, 568
HpyCH4IV	ACGT	2 cut(s)	273, 823
HpyCH4V	TGCA	7 cut(s)	377, 413, 527, 534, 794, 859, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 371
HpyF3I	CTNAG	5 cut(s)	101, 315, 354, 726, 754
HpySE526I	ACGT	2 cut(s)	273, 823
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	9 cut(s)	211, 229, 531, 584, 606, 670, 947, 956, 967
Ksp22I	TGATCA	2 cut(s)	447, 499
Kzo9I	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
LmnI	GCTCC	3 cut(s)	363, 550, 1053
Lsp1109I	GCAGC	4 cut(s)	361, 460, 518, 604
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	273, 823
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	7 cut(s)	197, 288, 404, 449, 501, 652, 752
MboI	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
MboII	GAAGA	8 cut(s)	20, 37, 43, 46, 179, 228, 776, 983
MflI	RGATCY	2 cut(s)	402, 750
MhlI	GDGCHC	1 cut(s)	1012
MluCI	AATT	5 cut(s)	94, 160, 684, 876, 1043
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	486, 570
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	167, 398, 853
MspR9I	CCNGG	2 cut(s)	167, 645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	230, 371
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
NlaIII	CATG	9 cut(s)	211, 229, 531, 584, 606, 670, 947, 956, 967
NlaIV	GGNNCC	3 cut(s)	171, 351, 396
NmeAIII	GCCGAG	1 cut(s)	391
NspI	RCATGY	2 cut(s)	531, 967
NspV	TTCGAA	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	531
PagI	TCATGA	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	4 cut(s)	344, 561, 808, 1039
PkrI	GCNGC	4 cut(s)	376, 475, 533, 619
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	3 cut(s)	171, 351, 396
PspPI	GGNCC	2 cut(s)	973, 1026
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	402, 750
PvuII	CAGCTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	486, 570
SatI	GCNGC	4 cut(s)	375, 474, 532, 618
Sau3AI	GATC	7 cut(s)	195, 286, 402, 447, 499, 650, 750
Sau96I	GGNCC	2 cut(s)	973, 1026
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	167, 645
SduI	GDGCHC	1 cut(s)	1012
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	512
SinI	GGWCC	1 cut(s)	973
SpeI	ACTAGT	1 cut(s)	434
SphI	GCATGC	1 cut(s)	531
Sse9I	AATT	5 cut(s)	94, 160, 684, 876, 1043
SsiI	CCGC	2 cut(s)	182, 773
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	165, 643
TaaI	ACNGT	3 cut(s)	329, 337, 568
TaiI	ACGT	2 cut(s)	276, 826
TaqI	TCGA	5 cut(s)	263, 512, 692, 881, 1006
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	5 cut(s)	94, 160, 684, 876, 1043
TfiI	GAWTC	4 cut(s)	344, 561, 808, 1039
Tru1I	TTAA	2 cut(s)	486, 570
Tru9I	TTAA	2 cut(s)	486, 570
TscAI	CASTG	2 cut(s)	296, 571
TseI	GCWGC	4 cut(s)	374, 473, 531, 617
TspDTI	ATGAA	2 cut(s)	941, 960
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	296, 571
VpaK11BI	GGWCC	1 cut(s)	973
XapI	RAATTY	2 cut(s)	684, 876
XceI	RCATGY	2 cut(s)	531, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	912
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	435
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.