Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009298

Physical Location & Seq

Genomic Coordinates Forward (+)

28047986 .. 28050511

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCAAAACGATGTCGTATTTATGGAAACCAGTACAATTTGTTGACAAAAATGCCCTTCCCTCTTCCTCTCTTCTCTCTCCAACCCGCCACTCTCTTCTTCACCCCAAAAGCCTTCGTTTTTCTCAGCCGCAGCTCAATCACCATGTCAGTCCAGTTCGACGCCATAAATCCCAGTTCCCAAAATGCCCTCCAAACCTCCCAGAATTACCCCGTGCCCCTCTCCCCGCCTCTGCCACCCATCTCAAAGCACATAGAGCTGGCGAGAGCCATGTCTGCCTCCTCCAAATCCAGCCTCTTTTCCCTCTCTAGAGACGACGTCGTTTTCGAGGACCAGTGGCTCATTGTTGTCAACAAACCTCAGGGAGTTTACTGTGAGAGCGTGTTGGAATCGGTCCCTCAGCTTCTCTGTGACTCGGCCGAGTCAGTTGCAGGGACCCCGGCCAACCAGCTAGAACTCCATCTTGCAAATCGGCTTGATCGTGACACTAGTGGGCTAATGGTAATAACCAAGTCACACAAAGTAGCTTCCAAGCTTGTGAAGGCATTTACTGATCACAAAATTTCAAAAACATACATTGCACGCTGCATTGGTTCAGCTCCGAAATGGGAAAGAATCACCCTTAAATCAGGTCATGGTCGGTCAAAATTTGGGGCCTGGCGAGTGTATGCTGCTTCAGATGTAGGCCGTACACTTCCAGGTGGATCAATGGTCAGAGACATGGAAACATCCTTTGAAGTATTATCAATAAATGGACAAGGGAGCTTGAAAGAGCCATCTGAATTTAAGAAAGATGAAGCAAATACTATAGTAGTTCAAGAGAAAGCTGTAATAGATAAAGACACAAAGAAGGATGAGATTTTGGTGAGAGCGCGTCCTAGGAGTGGAAGAACACATCAAATCCGCCTGCATTGCCAGTATCTTGGAATTTCCATAAGAGGGGATGTCAAGTATGAGGGCGTGTATGAGTGGAAAGGGAGAACTTATGATGGCCATGAACTTCATGCGGAGAGCTTGTCTTTTGAGCACCCCATTACTGGTCTTCCAGTAATGTTTCAGGCACCTGTACCTTCTTGGGCCAGCCAGGCTTTGCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

367

Amino Acids

40.75

Weight (kDa)

9.22

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56345 AT1G56345
fragaria_vesca	FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380
malus_domestica	MD12G1206400.v1.1
prunus_persica	Prupe.6G313700_v2.0.a1
pyrus_communis	pycom12g19430
rosa_chinensis	RchiOBHm_Chr3g0456981
rosa_laevigata	RLG00000025256
rosa_multiflora	Rmu_sc0016008.1_g000006 Rmu_sc0039874.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422300
rosa_rugosa	Rorug03G0018000
rosa_samantha	Rh3AG078000 Rh3BG079800 Rh3CG079700 Rh3DG081500
rosa_wichuraiana	Rw3G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	1060
AccII	CGCG	1 cut(s)	874
AciI	CCGC	5 cut(s)	87, 130, 227, 904, 1007
AclWI	GGATC	1 cut(s)	712
AcoI	YGGCCR	3 cut(s)	417, 441, 991
AcsI	RAATTY	4 cut(s)	561, 647, 782, 927
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	2 cut(s)	162, 318
AfaI	GTAC	3 cut(s)	35, 691, 1068
AfiI	CCNNNNNNNGG	3 cut(s)	884, 939, 1037
AgsI	TTSAA	4 cut(s)	567, 737, 769, 818
AhlI	ACTAGT	1 cut(s)	488
AjnI	CCWGG	3 cut(s)	656, 697, 1083
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	2 cut(s)	306, 711
AlwI	GGATC	1 cut(s)	712
AoxI	GGCC	6 cut(s)	417, 441, 654, 685, 991, 1077
ApeKI	GCWGC	4 cut(s)	132, 585, 671, 1093
ApoI	RAATTY	4 cut(s)	561, 647, 782, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	1 cut(s)	874
AspS9I	GGNCC	5 cut(s)	331, 394, 435, 654, 1077
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	4 cut(s)	94, 133, 610, 877
AvaII	GGWCC	3 cut(s)	331, 394, 435
AvrII	CCTAGG	1 cut(s)	878
AxyI	CCTNAGG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	993
BanI	GGYRCC	1 cut(s)	1060
BbsI	GAAGAC	1 cut(s)	1034
Bbv12I	GWGCWC	1 cut(s)	1029
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	144, 572, 658
BccI	CCATC	4 cut(s)	248, 468, 784, 983
BceAI	ACGGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	3 cut(s)	658, 699, 1085
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	306, 711
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	5 cut(s)	309, 452, 489, 879, 1099
BfmI	CTRYAG	1 cut(s)	807
BglI	GCCNNNNNGGC	1 cut(s)	1085
BisI	GCNGC	5 cut(s)	130, 133, 586, 672, 1094
BlnI	CCTAGG	1 cut(s)	878
BlsI	GCNGC	5 cut(s)	131, 134, 587, 673, 1095
Bme1390I	CCNGG	4 cut(s)	440, 658, 699, 1085
Bme18I	GGWCC	3 cut(s)	331, 394, 435
BmgT120I	GGNCC	5 cut(s)	331, 394, 435, 654, 1077
BmiI	GGNNCC	5 cut(s)	396, 436, 437, 655, 1062
BmrFI	CCNGG	4 cut(s)	440, 658, 699, 1085
BmrI	ACTGGG	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	1034
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	440
BsaHI	GRCGYC	2 cut(s)	162, 318
BsaJI	CCNNGG	2 cut(s)	438, 878
BsaXI	ACNNNNNCTCC	2 cut(s)	1001, 1031
Bsc4I	CCNNNNNNNGG	3 cut(s)	884, 939, 1037
Bse1I	ACTGG	7 cut(s)	31, 154, 174, 334, 916, 1042, 1046
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	576, 910
BseBI	CCWGG	3 cut(s)	658, 699, 1085
BseDI	CCNNGG	2 cut(s)	438, 878
BseGI	GGATG	3 cut(s)	728, 859, 949
BseLI	CCNNNNNNNGG	3 cut(s)	884, 939, 1037
BseMI	GCAATG	2 cut(s)	576, 910
BseMII	CTCAG	3 cut(s)	139, 374, 413
BseNI	ACTGG	7 cut(s)	31, 154, 174, 334, 916, 1042, 1046
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	3 cut(s)	144, 572, 658
Bsh1236I	CGCG	1 cut(s)	874
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	6 cut(s)	419, 443, 656, 687, 993, 1079
BshNI	GGYRCC	1 cut(s)	1060
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	1029
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	380, 448
BslI	CCNNNNNNNGG	3 cut(s)	884, 939, 1037
BsmAI	GTCTC	2 cut(s)	306, 711
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	2 cut(s)	380, 448
BsnI	GGCC	6 cut(s)	419, 443, 656, 687, 993, 1079
Bsp1286I	GDGCHC	2 cut(s)	219, 1029
Bsp143I	GATC	3 cut(s)	478, 553, 704
BspACI	CCGC	5 cut(s)	87, 130, 227, 904, 1007
BspANI	GGCC	6 cut(s)	419, 443, 656, 687, 993, 1079
BspCNI	CTCAG	3 cut(s)	138, 373, 412
BspFNI	CGCG	1 cut(s)	874
BspLI	GGNNCC	5 cut(s)	396, 436, 437, 655, 1062
BspPI	GGATC	1 cut(s)	712
BspT107I	GGYRCC	1 cut(s)	1060
BsrDI	GCAATG	2 cut(s)	576, 910
BsrI	ACTGG	7 cut(s)	31, 154, 174, 334, 916, 1042, 1046
BssECI	CCNNGG	2 cut(s)	438, 878
BssMI	GATC	3 cut(s)	478, 553, 704
BssNI	GRCGYC	2 cut(s)	162, 318
BssT1I	CCWWGG	1 cut(s)	878
Bst2UI	CCWGG	3 cut(s)	658, 699, 1085
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	3 cut(s)	69, 77, 101
BstACI	GRCGYC	2 cut(s)	162, 318
BstC8I	GCNNGC	4 cut(s)	261, 583, 908, 1081
BstDEI	CTNAG	3 cut(s)	125, 360, 399
BstF5I	GGATG	3 cut(s)	728, 859, 949
BstFNI	CGCG	1 cut(s)	874
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	3 cut(s)	481, 556, 707
BstMAI	GTCTC	2 cut(s)	306, 711
BstMBI	GATC	3 cut(s)	478, 553, 704
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 275, 912, 1085
BstNI	CCWGG	3 cut(s)	658, 699, 1085
BstSCI	CCNGG	4 cut(s)	438, 656, 697, 1083
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	874
BstV1I	GCAGC	3 cut(s)	144, 572, 658
BstV2I	GAAGAC	1 cut(s)	1034
BstXI	CCANNNNNNTGG	1 cut(s)	923
BstZI	CGGCCG	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	6 cut(s)	419, 443, 656, 687, 993, 1079
BtsCI	GGATG	3 cut(s)	728, 859, 949
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	4 cut(s)	261, 583, 908, 1081
CfoI	GCGC	1 cut(s)	874
Cfr13I	GGNCC	5 cut(s)	331, 394, 435, 654, 1077
CseI	GACGC	2 cut(s)	170, 863
Csp6I	GTAC	3 cut(s)	34, 690, 1067
CviAII	CATG	6 cut(s)	145, 271, 635, 721, 995, 1004
CviQI	GTAC	3 cut(s)	34, 690, 1067
DdeI	CTNAG	3 cut(s)	125, 360, 399
DpnI	GATC	3 cut(s)	480, 555, 706
DpnII	GATC	3 cut(s)	478, 553, 704
EaeI	YGGCCR	3 cut(s)	417, 441, 991
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	3 cut(s)	69, 77, 101
EarI	CTCTTC	3 cut(s)	69, 77, 101
EciI	GGCGGA	1 cut(s)	893
EclXI	CGGCCG	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	878
Eco47I	GGWCC	3 cut(s)	331, 394, 435
Eco52I	CGGCCG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	660
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	2 cut(s)	435, 654
EcoRII	CCWGG	3 cut(s)	656, 697, 1083
EcoT14I	CCWWGG	1 cut(s)	878
ErhI	CCWWGG	1 cut(s)	878
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	6 cut(s)	148, 274, 638, 724, 998, 1007
FaqI	GGGAC	2 cut(s)	380, 448
FatI	CATG	6 cut(s)	144, 270, 634, 720, 994, 1003
FauI	CCCGC	2 cut(s)	94, 234
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	130, 133, 586, 672, 1094
FokI	GGATG	3 cut(s)	715, 866, 956
Fsp4HI	GCNGC	5 cut(s)	130, 133, 586, 672, 1094
FspBI	CTAG	5 cut(s)	309, 452, 489, 879, 1099
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	5 cut(s)	130, 133, 586, 672, 1094
HaeIII	GGCC	6 cut(s)	419, 443, 656, 687, 993, 1079
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	2 cut(s)	170, 863
HhaI	GCGC	1 cut(s)	874
Hin1I	GRCGYC	2 cut(s)	162, 318
Hin1II	CATG	6 cut(s)	148, 274, 638, 724, 998, 1007
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HincII	GTYRAC	2 cut(s)	45, 352
HindII	GTYRAC	2 cut(s)	45, 352
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	4 cut(s)	389, 413, 422, 615
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	4 cut(s)	94, 133, 610, 877
Hpy166II	GTNNAC	4 cut(s)	45, 352, 370, 692
Hpy188I	TCNGA	4 cut(s)	603, 679, 716, 781
Hpy188III	TCNNGA	3 cut(s)	309, 482, 818
Hpy8I	GTNNAC	4 cut(s)	45, 352, 370, 692
Hpy99I	CGWCG	3 cut(s)	164, 320, 323
HpyAV	CCTTC	5 cut(s)	67, 124, 535, 844, 1080
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	431, 467, 581, 588, 910, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 275, 912, 1085
HpyF3I	CTNAG	3 cut(s)	125, 360, 399
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	2 cut(s)	162, 318
Hsp92II	CATG	6 cut(s)	148, 274, 638, 724, 998, 1007
HspAI	GCGC	1 cut(s)	872
KflI	GGGWCCC	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	478, 553, 704
LmnI	GCTCC	2 cut(s)	604, 762
Lsp1109I	GCAGC	3 cut(s)	144, 572, 658
MaeI	CTAG	5 cut(s)	309, 452, 489, 879, 1099
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	410, 482, 513
MalI	GATC	3 cut(s)	480, 555, 706
MboI	GATC	3 cut(s)	478, 553, 704
MboII	GAAGA	6 cut(s)	56, 64, 88, 91, 900, 1034
MhlI	GDGCHC	2 cut(s)	219, 1029
MlsI	TGGCCA	1 cut(s)	993
MluCI	AATT	6 cut(s)	37, 205, 561, 647, 782, 927
MluNI	TGGCCA	1 cut(s)	993
MlyI	GAGTC	2 cut(s)	407, 431
MmeI	TCCRAC	2 cut(s)	106, 366
Mox20I	TGGCCA	1 cut(s)	993
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	2 cut(s)	624, 786
Msp20I	TGGCCA	1 cut(s)	993
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	4 cut(s)	440, 658, 699, 1085
MvaI	CCWGG	3 cut(s)	658, 699, 1085
MvnI	CGCG	1 cut(s)	874
MwoI	GCNNNNNNNGC	4 cut(s)	256, 275, 912, 1085
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	478, 553, 704
NlaIII	CATG	6 cut(s)	148, 274, 638, 724, 998, 1007
NlaIV	GGNNCC	5 cut(s)	396, 436, 437, 655, 1062
NmeAIII	GCCGAG	2 cut(s)	395, 445
NmuCI	GTSAC	3 cut(s)	410, 482, 513
PcsI	WCGNNNNNNNCGW	2 cut(s)	324, 478
PfeI	GAWTC	2 cut(s)	389, 615
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	131, 134, 587, 673, 1095
PleI	GAGTC	2 cut(s)	407, 430
PpsI	GAGTC	2 cut(s)	407, 430
PpuMI	RGGWCCY	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	3 cut(s)	656, 697, 1083
PspGI	CCWGG	3 cut(s)	656, 697, 1083
PspN4I	GGNNCC	5 cut(s)	396, 436, 437, 655, 1062
PspPI	GGNCC	5 cut(s)	331, 394, 435, 654, 1077
PspPPI	RGGWCCY	1 cut(s)	435
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	3 cut(s)	35, 691, 1068
RsaNI	GTAC	3 cut(s)	34, 690, 1067
SaqAI	TTAA	2 cut(s)	624, 786
SatI	GCNGC	5 cut(s)	130, 133, 586, 672, 1094
Sau3AI	GATC	3 cut(s)	478, 553, 704
Sau96I	GGNCC	5 cut(s)	331, 394, 435, 654, 1077
SchI	GAGTC	2 cut(s)	407, 431
ScrFI	CCNGG	4 cut(s)	440, 658, 699, 1085
SduI	GDGCHC	2 cut(s)	219, 1029
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	3 cut(s)	331, 394, 435
SpeI	ACTAGT	1 cut(s)	488
Sse9I	AATT	6 cut(s)	37, 205, 561, 647, 782, 927
SsiI	CCGC	5 cut(s)	87, 130, 227, 904, 1007
SspMI	CTAG	5 cut(s)	309, 452, 489, 879, 1099
StyD4I	CCNGG	4 cut(s)	438, 656, 697, 1083
StyI	CCWWGG	1 cut(s)	878
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	159, 327
TaqII	GACCGA	2 cut(s)	382, 630
TasI	AATT	6 cut(s)	37, 205, 561, 647, 782, 927
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	389, 615
Tru1I	TTAA	2 cut(s)	624, 786
Tru9I	TTAA	2 cut(s)	624, 786
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	3 cut(s)	410, 482, 513
TseI	GCWGC	4 cut(s)	132, 585, 671, 1093
Tsp45I	GTSAC	3 cut(s)	410, 482, 513
TspDTI	ATGAA	3 cut(s)	810, 992, 1011
TspRI	CASTG	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	3 cut(s)	331, 394, 435
XapI	RAATTY	4 cut(s)	561, 647, 782, 927
XbaI	TCTAGA	1 cut(s)	308
XmaJI	CCTAGG	1 cut(s)	878
XspI	CTAG	5 cut(s)	309, 452, 489, 879, 1099
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.