Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009298

Physical Location & Seq

Genomic Coordinates Reverse (-)

6199119 .. 6199883

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCCTTCCCTCTTATTCTTCAACCCGCCAATGTCTTCTTCACCCCTAAAACCCTCACCAGCTTCCCCAAAGCCTTGAGCTCAATTTCAATGTCAGACCAACCCGAATCCACAAAACCCACTTCCCAAAATGCCCTCCAAGCCACACAAAATTACCCTGTGCCCCTCTCCCCGCCTCTCCCACCCGTCTCAAAGAACATTGAGCTGGCGAGAGCCATGTCCGCCTCTACCAAATCCAGCCTCTTTTCTCTGTCGCGGGACGACGTCGTTTACGAGGACCAGTGGCTCATTGTTGTCAACAAGCCTCAGGGGATTTACTGTGAGACTGTGCTGGAATCGGTCCCTAAGCTTCTCTTTGACTCGGCCGAGTCAGATAGTGAAATGCTCCCTACTCGAACTATTGAGAGGGTAGAGGATAGAATAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

143

Amino Acids

15.76

Weight (kDa)

4.78

Isoelectric Point (pI)

72.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56345 AT1G56345
fragaria_vesca	FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380 FvH4_6g07380
malus_domestica	MD12G1206400.v1.1
prunus_persica	Prupe.6G313700_v2.0.a1
pyrus_communis	pycom12g19430
rosa_chinensis	RchiOBHm_Chr3g0456981
rosa_laevigata	RLG00000025256
rosa_multiflora	Rmu_sc0016008.1_g000006 Rmu_sc0039874.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422300
rosa_rugosa	Rorug03G0018000
rosa_samantha	Rh3AG078000 Rh3BG079800 Rh3CG079700 Rh3DG081500
rosa_wichuraiana	Rw3G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccII	CGCG	1 cut(s)	256
AciI	CCGC	4 cut(s)	27, 173, 222, 256
AcoI	YGGCCR	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	23, 90
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	63, 81, 205, 349, 428
AluI	AGCT	5 cut(s)	63, 81, 205, 349, 428
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	193, 317
AoxI	GGCC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	277, 340
AsuHPI	GGTGA	2 cut(s)	34, 49
AvaII	GGWCC	2 cut(s)	277, 340
AxyI	CCTNAGG	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	193, 317
Bme18I	GGWCC	2 cut(s)	277, 340
BmgT120I	GGNCC	2 cut(s)	277, 340
BmiI	GGNNCC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	272, 326
BsmAI	GTCTC	2 cut(s)	193, 317
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	272, 326
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	83, 165
BspACI	CCGC	4 cut(s)	27, 173, 222, 256
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	320, 328
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	306, 345
BstFNI	CGCG	1 cut(s)	256
BstMAI	GTCTC	2 cut(s)	193, 317
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 221
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	277, 340
CviAII	CATG	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	306, 345
EaeI	YGGCCR	1 cut(s)	363
EagI	CGGCCG	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	277, 340
Eco52I	CGGCCG	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	272, 326
FatI	CATG	1 cut(s)	216
FauI	CCCGC	3 cut(s)	34, 180, 249
FriOI	GRGCYC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	107, 335, 359, 368
HphI	GGTGA	2 cut(s)	34, 49
Hpy166II	GTNNAC	2 cut(s)	271, 298
Hpy188I	TCNGA	2 cut(s)	97, 373
Hpy8I	GTNNAC	2 cut(s)	271, 298
Hpy99I	CGWCG	2 cut(s)	266, 269
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	320, 328
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 221
HpyF3I	CTNAG	2 cut(s)	306, 345
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	390, 425
LpnPI	CCDG	7 cut(s)	73, 171, 191, 250, 293, 293, 317
MaeII	ACGT	1 cut(s)	264
MboII	GAAGA	3 cut(s)	11, 28, 31
MhlI	GDGCHC	2 cut(s)	83, 165
MluCI	AATT	2 cut(s)	84, 151
MlyI	GAGTC	2 cut(s)	353, 377
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	140, 221
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	342
NmeAIII	GCCGAG	2 cut(s)	341, 391
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	107, 335
PflFI	GACNNNGTC	1 cut(s)	263
PleI	GAGTC	2 cut(s)	353, 376
PpsI	GAGTC	2 cut(s)	353, 376
Psp124BI	GAGCTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	277, 340
PsyI	GACNNNGTC	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	83
Sau96I	GGNCC	2 cut(s)	277, 340
SchI	GAGTC	2 cut(s)	353, 377
SduI	GDGCHC	2 cut(s)	83, 165
SetI	ASST	6 cut(s)	65, 83, 207, 267, 351, 430
SinI	GGWCC	2 cut(s)	277, 340
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	84, 151
SsiI	CCGC	4 cut(s)	27, 173, 222, 256
SstI	GAGCTC	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	320, 328
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	394
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	84, 151
TfiI	GAWTC	2 cut(s)	107, 335
TscAI	CASTG	1 cut(s)	287
TspRI	CASTG	1 cut(s)	287
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	277, 340
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.