AT1G61215
MYB Family

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011308
Physical Location & Seq
Forward (+)
22572609 .. 22575583
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61215.1

Sequence Viewer

Length: 1428 bp
ATGGTTATGGTGATGATGACGACGACAATGGAGAGTGATTGGGGAACATGGGAGGAGCTTCTTCTCGGCGGCGCTGTTCTCCGTCATGGAACCGGTGATTGGACCGTCGTTGCCGACGAACTCCGTTCTCATTCTTTACCTGAGATTTTCACACCTGAGATATGCAAGGCCAAGTACAAAGACTTGCGAAAACGTTATGTGGGATGCAAAGCTTGGTTTGAAGAGCTTAAGAAGAAACGAGTAGCTGAGCTTAAAGCAGCTTTACTTAAATCCGAAGACTCTATTGGGTCTTTGGAATCAAAGCTTCAGAGTCTGAAGTCAGAAAGTAATGATGAATGTCATCAAAACAATTATGATTCTAGCCGAACGTTATCACTCGAACCCTCCCCAAAATCCGAGGGCGGGGGAGAATGCACGAGCAAAGATACATCCAAAGACTTGTCATCAGTTGGTAGTTTCACACAGCAAGAGCTGACCACAACAAACTGGTCACCGGAAGCTAAGTCAGAAGCTCCAGTGGTAATAGAGCAAGAGAAGACGAAAGACCTATTACACAACGACATTTTCGAGTCAGTGTACGGAGGTGGAGGACAAGTGCTTCCGAGTATGAGGAAGAAACGAGGCAAGAGAAAACGAAAAGATTGCAGTGTCAGTGTCGGTAAAGAAGTGATGGAAGTTAGCGCTGTGGAAGAAAGCGATTTGTTTGATACATCTGCGGATATTGCTAGCATTTATAGGAGTAAAGAAGCTGCTTCTACTAGCAGCAGTCAAAGCCGAGGTCACAGTTTGGCTTTACCCAAAGAGCTTATGAAGATATACAACACTATTGCACAGAACGAATGTGCACTCGTCTTCCGTAGACGGCTTGATAGCCAGAAAAGAGGAAGATACAAGAAATTAGTACGGAGGCATATGGATTTAGACACTGTACAATCAAGAATCAACGGTTGTTCGATATCTTCGGCGAAAGAGCTTTTTAGGGACTTTCTTTTGGTGGCGAACAATGCAGCTATTTTTTACTCTAAGAACACTCGAGAATACAAATCCGCGGTGGGACTTAGAGACATTGTTACCAAGTCTCTAAGACACTATTTAACAGAAGATCATCCTCCTCATCGCAGCAGCATTACTGCTGGAAGCACAAAGGTTGTGGTTCTTCATCAGAAATCGACATCTCCTTCTGTCCGAACGAGTCTGGCAGCTAAAAAACCAAGAACCGGGGCGCACCCTCTTAAAACGGTTGTGCAAGATATGGCAAAGACTTCAAGTAGGGGTAACAAAAGGTCTGTTACGGATTTACCAGTTTCTGCTGTGAAATCCTCGGCAGCGGGTAAGAAGGGAACTGCGGTAAGAAAAGACGGTAGACAAGCGAATCGCGGACTCGAATCTCCTGCATTGATGGGGAGAAAGCGGAACCGGGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

475

Amino Acids

52.71

Weight (kDa)

9.68

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 270 - 350 1.3e-10 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 859, 1363
AccII CGCG 2 cut(s) 1049, 1377
AciI CCGC 9 cut(s) 69, 402, 716, 1047, 1049, 1328, 1346, 1377, 1411
AclI AACGTT 2 cut(s) 193, 368
AcuI CTGAAG 2 cut(s) 290, 335
AfaI GTAC 4 cut(s) 176, 578, 903, 930
AfeI AGCGCT 1 cut(s) 682
AfiI CCNNNNNNNGG 3 cut(s) 99, 402, 1217
AflII CTTAAG 1 cut(s) 227
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 2 cut(s) 221, 1266
AjuI GAANNNNNNNTTGG 4 cut(s) 82, 114, 267, 299
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 2 cut(s) 1056, 1083
Alw44I GTGCAC 1 cut(s) 843
AlwNI CAGNNNCTG 2 cut(s) 313, 1307
Ama87I CYCGRG 1 cut(s) 1032
Aor51HI AGCGCT 1 cut(s) 682
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 8 cut(s) 257, 749, 762, 1007, 1119, 1122, 1199, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 3 cut(s) 74, 683, 1225
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 2 cut(s) 1219, 1418
AsuHPI GGTGA 3 cut(s) 22, 107, 483
AsuNHI GCTAGC 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 1032
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 847
BauI CACGAG 1 cut(s) 415
BbsI GAAGAC 3 cut(s) 282, 542, 844
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 8 cut(s) 269, 736, 774, 1019, 1131, 1134, 1211, 1337
BccI CCATC 2 cut(s) 664, 1393
BceAI ACGGC 1 cut(s) 878
BcgI CGANNNNNNTGC 4 cut(s) 624, 658, 1373, 1407
BcnI CCSGG 2 cut(s) 1219, 1418
BcoDI GTCTC 2 cut(s) 1056, 1083
BfaI CTAG 3 cut(s) 360, 726, 759
BfoI RGCGCY 2 cut(s) 75, 684
BfrI CTTAAG 1 cut(s) 227
BisI GCNGC 9 cut(s) 70, 258, 750, 763, 1008, 1120, 1123, 1200, 1326
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 9 cut(s) 71, 259, 751, 764, 1009, 1121, 1124, 1201, 1327
Bme1390I CCNGG 2 cut(s) 1219, 1418
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 91, 1415
BmrFI CCNGG 2 cut(s) 1219, 1418
BmsI GCATC 1 cut(s) 194
BmtI GCTAGC 1 cut(s) 729
BpiI GAAGAC 3 cut(s) 282, 542, 844
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 1219, 1418
BsaJI CCNNGG 5 cut(s) 396, 775, 1047, 1218, 1320
BsaWI WCCGGW 2 cut(s) 92, 493
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 402, 1217
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 491, 515, 1301
BseDI CCNNGG 5 cut(s) 396, 775, 1047, 1218, 1320
BseGI GGATG 3 cut(s) 209, 428, 1105
BseLI CCNNNNNNNGG 3 cut(s) 99, 402, 1217
BseMII CTCAG 3 cut(s) 132, 147, 237
BseNI ACTGG 3 cut(s) 491, 515, 1301
BseRI GAGGAG 2 cut(s) 68, 1101
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 8 cut(s) 269, 736, 774, 1019, 1131, 1134, 1211, 1337
Bsh1236I CGCG 2 cut(s) 1049, 1377
BshFI GGCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 1032
BsiSI CCGG 4 cut(s) 93, 494, 1218, 1417
BslFI GGGAC 2 cut(s) 995, 1068
BslI CCNNNNNNNGG 3 cut(s) 99, 402, 1217
BsmAI GTCTC 2 cut(s) 1056, 1083
BsmFI GGGAC 2 cut(s) 995, 1068
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 1032
Bsp1286I GDGCHC 1 cut(s) 847
Bsp1407I TGTACA 1 cut(s) 928
Bsp143I GATC 1 cut(s) 1102
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 9 cut(s) 69, 402, 716, 1047, 1049, 1328, 1346, 1377, 1411
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 133, 148, 238
BspFNI CGCG 2 cut(s) 1049, 1377
BspLI GGNNCC 2 cut(s) 91, 1415
BspOI GCTAGC 1 cut(s) 729
BspQI GCTCTTC 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 928
BsrI ACTGG 3 cut(s) 491, 515, 1301
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 5 cut(s) 396, 775, 1047, 1218, 1320
BssMI GATC 1 cut(s) 1102
BssSI CACGAG 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 415
Bst4CI ACNGT 6 cut(s) 106, 785, 928, 947, 1240, 1361
Bst6I CTCTTC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 928
BstC8I GCNNGC 1 cut(s) 727
BstDEI CTNAG 7 cut(s) 141, 156, 246, 501, 1023, 1058, 1082
BstDSI CCRYGG 1 cut(s) 1047
BstEII GGTNACC 1 cut(s) 489
BstF5I GGATG 3 cut(s) 209, 428, 1105
BstFNI CGCG 2 cut(s) 1049, 1377
BstH2I RGCGCY 2 cut(s) 75, 684
BstHHI GCGC 3 cut(s) 74, 683, 1225
BstKTI GATC 1 cut(s) 1105
BstMAI GTCTC 2 cut(s) 1056, 1083
BstMBI GATC 1 cut(s) 1102
BstMWI GCNNNNNNNGC 3 cut(s) 722, 771, 1004
BstPI GGTNACC 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 1217, 1416
BstSLI GKGCMC 1 cut(s) 847
BstUI CGCG 2 cut(s) 1049, 1377
BstV1I GCAGC 8 cut(s) 269, 736, 774, 1019, 1131, 1134, 1211, 1337
BstV2I GAAGAC 3 cut(s) 282, 542, 844
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 1047
BtgZI GCGATG 1 cut(s) 1100
BtsCI GGATG 3 cut(s) 209, 428, 1105
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 5 cut(s) 522, 579, 652, 658, 924
Cac8I GCNNGC 1 cut(s) 727
CaiI CAGNNNCTG 2 cut(s) 313, 1307
CfoI GCGC 3 cut(s) 74, 683, 1225
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 102
Cfr42I CCGCGG 1 cut(s) 1050
Csp6I GTAC 4 cut(s) 175, 577, 902, 929
CspAI ACCGGT 1 cut(s) 92
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviAII CATG 2 cut(s) 48, 86
CviQI GTAC 4 cut(s) 175, 577, 902, 929
DdeI CTNAG 7 cut(s) 141, 156, 246, 501, 1023, 1058, 1082
DpnI GATC 1 cut(s) 1104
DpnII GATC 1 cut(s) 1102
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 957
Eco47I GGWCC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 290, 335
Eco88I CYCGRG 1 cut(s) 1032
Eco91I GGTNACC 1 cut(s) 489
EcoO65I GGTNACC 1 cut(s) 489
EcoRV GATATC 1 cut(s) 957
FaeI CATG 2 cut(s) 51, 89
FaqI GGGAC 2 cut(s) 995, 1068
FatI CATG 2 cut(s) 47, 85
FauI CCCGC 2 cut(s) 395, 1321
FauNDI CATATG 1 cut(s) 912
FblI GTMKAC 2 cut(s) 859, 1363
Fnu4HI GCNGC 9 cut(s) 70, 258, 750, 763, 1008, 1120, 1123, 1200, 1326
FokI GGATG 3 cut(s) 216, 415, 1092
Fsp4HI GCNGC 9 cut(s) 70, 258, 750, 763, 1008, 1120, 1123, 1200, 1326
FspBI CTAG 3 cut(s) 360, 726, 759
GlaI GCGC 3 cut(s) 73, 682, 1224
GluI GCNGC 9 cut(s) 70, 258, 750, 763, 1008, 1120, 1123, 1200, 1326
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 2 cut(s) 75, 684
HaeIII GGCC 1 cut(s) 170
HapII CCGG 4 cut(s) 93, 494, 1218, 1417
HhaI GCGC 3 cut(s) 74, 683, 1225
Hin1II CATG 2 cut(s) 51, 89
Hin6I GCGC 3 cut(s) 72, 681, 1223
HinP1I GCGC 3 cut(s) 72, 681, 1223
HindIII AAGCTT 2 cut(s) 210, 302
HpaII CCGG 4 cut(s) 93, 494, 1218, 1417
HphI GGTGA 3 cut(s) 22, 107, 483
Hpy166II GTNNAC 4 cut(s) 577, 845, 860, 1364
Hpy188I TCNGA 9 cut(s) 274, 309, 315, 322, 397, 508, 603, 1164, 1187
Hpy188III TCNNGA 2 cut(s) 936, 1034
Hpy8I GTNNAC 4 cut(s) 577, 845, 860, 1364
Hpy99I CGWCG 3 cut(s) 25, 110, 119
HpyAV CCTTC 2 cut(s) 1188, 1330
HpyCH4III ACNGT 6 cut(s) 106, 785, 928, 947, 1240, 1361
HpyCH4IV ACGT 2 cut(s) 193, 368
HpyCH4V TGCA 9 cut(s) 165, 207, 414, 645, 830, 845, 1007, 1246, 1394
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 771, 1004
HpyF3I CTNAG 7 cut(s) 141, 156, 246, 501, 1023, 1058, 1082
HpySE526I ACGT 2 cut(s) 193, 368
Hsp92II CATG 2 cut(s) 51, 89
HspAI GCGC 3 cut(s) 72, 681, 1223
KspI CCGCGG 1 cut(s) 1050
Kzo9I GATC 1 cut(s) 1102
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 55, 517
Lsp1109I GCAGC 8 cut(s) 269, 736, 774, 1019, 1131, 1134, 1211, 1337
LweI GCATC 1 cut(s) 194
MaeI CTAG 3 cut(s) 360, 726, 759
MaeII ACGT 2 cut(s) 193, 368
MaeIII GTNAC 5 cut(s) 489, 779, 1069, 1274, 1288
MalI GATC 1 cut(s) 1104
MboI GATC 1 cut(s) 1102
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 2 cut(s) 349, 896
MlyI GAGTC 5 cut(s) 272, 319, 578, 1201, 1374
MseI TTAA 5 cut(s) 228, 252, 267, 1094, 1233
MspA1I CMGCKG 2 cut(s) 1049, 1328
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 4 cut(s) 93, 494, 1218, 1417
MspR9I CCNGG 2 cut(s) 1219, 1418
Mva1269I GAATGC 1 cut(s) 416
MvnI CGCG 2 cut(s) 1049, 1377
MwoI GCNNNNNNNGC 3 cut(s) 722, 771, 1004
NciI CCSGG 2 cut(s) 1219, 1418
NdeI CATATG 1 cut(s) 912
NdeII GATC 1 cut(s) 1102
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 2 cut(s) 51, 89
NlaIV GGNNCC 2 cut(s) 91, 1415
NmeAIII GCCGAG 3 cut(s) 45, 800, 1301
NmuCI GTSAC 2 cut(s) 489, 779
PaeR7I CTCGAG 1 cut(s) 1032
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 564
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 5 cut(s) 296, 356, 939, 1372, 1385
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 9 cut(s) 71, 259, 751, 764, 1009, 1121, 1124, 1201, 1327
PleI GAGTC 5 cut(s) 272, 318, 577, 1200, 1374
PpsI GAGTC 5 cut(s) 272, 318, 577, 1200, 1374
Psp1406I AACGTT 2 cut(s) 193, 368
PspEI GGTNACC 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 91, 1415
PspPI GGNCC 1 cut(s) 102
PstNI CAGNNNCTG 2 cut(s) 313, 1307
RsaI GTAC 4 cut(s) 176, 578, 903, 930
RsaNI GTAC 4 cut(s) 175, 577, 902, 929
SacII CCGCGG 1 cut(s) 1050
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 5 cut(s) 228, 252, 267, 1094, 1233
SatI GCNGC 9 cut(s) 70, 258, 750, 763, 1008, 1120, 1123, 1200, 1326
Sau3AI GATC 1 cut(s) 1102
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 5 cut(s) 272, 319, 578, 1201, 1374
ScrFI CCNGG 2 cut(s) 1219, 1418
SduI GDGCHC 1 cut(s) 847
SfaNI GCATC 1 cut(s) 194
Sfr274I CTCGAG 1 cut(s) 1032
Sfr303I CCGCGG 1 cut(s) 1050
SgrBI CCGCGG 1 cut(s) 1050
SinI GGWCC 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 227, 1032
SmoI CTYRAG 2 cut(s) 227, 1032
Sse9I AATT 2 cut(s) 349, 896
SsiI CCGC 9 cut(s) 69, 402, 716, 1047, 1049, 1328, 1346, 1377, 1411
SspMI CTAG 3 cut(s) 360, 726, 759
StyD4I CCNGG 2 cut(s) 1217, 1416
TaaI ACNGT 6 cut(s) 106, 785, 928, 947, 1240, 1361
TaiI ACGT 2 cut(s) 196, 371
TaqI TCGA 6 cut(s) 378, 567, 953, 1033, 1169, 1383
TasI AATT 2 cut(s) 349, 896
TatI WGTACW 2 cut(s) 174, 928
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 5 cut(s) 296, 356, 939, 1372, 1385
Tru1I TTAA 5 cut(s) 228, 252, 267, 1094, 1233
Tru9I TTAA 5 cut(s) 228, 252, 267, 1094, 1233
TscAI CASTG 5 cut(s) 522, 579, 652, 658, 931
TseFI GTSAC 2 cut(s) 489, 779
TseI GCWGC 8 cut(s) 257, 749, 762, 1007, 1119, 1122, 1199, 1325
Tsp45I GTSAC 2 cut(s) 489, 779
TspDTI ATGAA 3 cut(s) 348, 824, 1148
TspGWI ACGGA 6 cut(s) 71, 113, 594, 845, 919, 1307
TspRI CASTG 5 cut(s) 522, 579, 652, 658, 931
Vha464I CTTAAG 1 cut(s) 227
VneI GTGCAC 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 102
XhoI CTCGAG 1 cut(s) 1032
XmiI GTMKAC 2 cut(s) 859, 1363
XspI CTAG 3 cut(s) 360, 726, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.