Rh5BG051900
MYB Family

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011308
Physical Location & Seq
Reverse (-)
4114091 .. 4117264
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG051900.1

Sequence Viewer

Length: 1182 bp
ATGGAAGAGTTGAGGCAAGCTCTAAAACAATCTGAGAACTCAATAGGGTCTTTGGAATCAAAACTTGAATCTCTTAAAGCTGAGAAAGGGCAAGGTGGTTGCATCAACTATGGCTCTGGCCAAACAGAATCACCTGTTCCTTCTCAAAAATCGGAGGGACATTACCCTTGTGGTAAAGAGATTTGTAAGGATGAGCCATCCGCTGGCAGTTTCACATGTGAAGCCTTGACAAGCTGCTCACCGGAATGCCAGATACCAGCTACAGTGTCAGCTGAAGACACTGAGACTAAACGAGAAGTTTCACAATCATTCAAGCACGAAAAAATCTCAATTGGGGCTTTCTACGGTGGACTTGGAGGGACTCTAAGAAAGAGAAGGGGCAAGAGGAAGAGGAAGGATTGTAGTAGGGATGTTAAGGAGGCGAGTGTTGGGGATAGTGGATTTTTGGATTCAGCTGATGCTATAACTGCCTTGCGGTGTATAGAACATTCAACCAGTGAGTGTCGTGAGGATTTGGGATCTTCTGGTGCAGGTGATTGGAAAAGAGGTTTGACCAAGGATGGAACTAATAAGTTGTTGGATGTTTTCAATAAATTTTTGGAACATAAAAGTGCTTCTGTCTTTCGTCATCGACTTGATAGCCAGAAGAGAAGAAGGTATAAGAAAATGATCCGTAGGCACATGGATTTTGACACATTAGGATCACAAATTGCAAGCCATTCTGTCATGTCAGTTAAGGAACTGTTTCGAGATCTGTTGCTGCTCGCCAACAATGCCCTAGTGTTTTACTCCAAGAGCACACGTGAATACAAATCTGCTTTGCTTCTTAGAGACCTCACTACCAAAACATTGCAGCAGCATCTGAAGGATTCTAACAGCAAGGCTACCTCTGCAAACCTCTCCTCCAATACACTAGTGTGTAATCCTCCAGTTAAACCTAGAAGTGCTCGCCCTGGTAATCAAAAGCTGTCGAGAAAAGCTACCAATGCCGGAAAGGCTGCTGCTAAGACTTCAAACAAAAGTAAGAAAACCAGTAATGCTAATGCAGATTCTTCTCCTTCAGTCCAATCTTTTGCTGTGACAAAAAGGACATCTGGTCACCAAAGGAAAGTGGGACGTAAAACTGTTGGTCAACAAAATGTAGTTCCTGTGAAGGGAAGGAAAAGAGGTCGTACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

393

Amino Acids

43.09

Weight (kDa)

9.91

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 194 - 273 1.1e-09 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 2 cut(s) 201, 475
AclWI GGATC 3 cut(s) 526, 664, 709
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 3 cut(s) 294, 884, 1044
AcvI CACGTG 1 cut(s) 803
AfaI GTAC 1 cut(s) 1174
AfiI CCNNNNNNNGG 2 cut(s) 203, 1154
AflIII ACRYGT 2 cut(s) 215, 800
AgsI TTSAA 5 cut(s) 68, 313, 492, 589, 1014
AhdI GACNNNNNGTC 1 cut(s) 1095
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 1 cut(s) 952
AleI CACNNNNGTG 1 cut(s) 916
AluBI AGCT 8 cut(s) 20, 80, 234, 260, 272, 455, 967, 980
AluI AGCT 8 cut(s) 20, 80, 234, 260, 272, 455, 967, 980
Alw21I GWGCWC 2 cut(s) 800, 949
Alw26I GTCTC 2 cut(s) 278, 825
AlwI GGATC 3 cut(s) 526, 664, 709
AlwNI CAGNNNCTG 1 cut(s) 862
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 6 cut(s) 234, 760, 853, 856, 998, 1001
ApoI RAATTY 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 744
AsuHPI GGTGA 4 cut(s) 123, 231, 545, 1091
BalI TGGCCA 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 800, 949
BbvI GCAGC 6 cut(s) 221, 747, 865, 868, 985, 988
BccI CCATC 2 cut(s) 205, 554
BciT130I CCWGG 1 cut(s) 954
BcoDI GTCTC 2 cut(s) 278, 825
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 3 cut(s) 779, 914, 939
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 995
BglII AGATCT 1 cut(s) 751
BisI GCNGC 6 cut(s) 235, 761, 854, 857, 999, 1002
BlsI GCNGC 6 cut(s) 236, 762, 855, 858, 1000, 1003
Bme1390I CCNGG 1 cut(s) 954
BmeRI GACNNNNNGTC 1 cut(s) 1095
BmrFI CCNGG 1 cut(s) 954
BmsI GCATC 3 cut(s) 111, 448, 868
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 912
BsaAI YACGTR 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 555, 952
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 1154
Bse1I ACTGG 3 cut(s) 495, 929, 1032
Bse3DI GCAATG 1 cut(s) 848
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 2 cut(s) 555, 952
BseGI GGATG 5 cut(s) 196, 197, 415, 565, 586
BseLI CCNNNNNNNGG 2 cut(s) 203, 1154
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 3 cut(s) 24, 72, 273
BseNI ACTGG 3 cut(s) 495, 929, 1032
BseRI GAGGAG 1 cut(s) 892
BseXI GCAGC 6 cut(s) 221, 747, 865, 868, 985, 988
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 800, 949
BsiSI CCGG 2 cut(s) 242, 990
BslFI GGGAC 3 cut(s) 171, 373, 1128
BslI CCNNNNNNNGG 2 cut(s) 203, 1154
BsmAI GTCTC 2 cut(s) 278, 825
BsmFI GGGAC 3 cut(s) 171, 373, 1128
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 825
Bsp1286I GDGCHC 2 cut(s) 800, 949
Bsp143I GATC 4 cut(s) 518, 669, 701, 751
BspACI CCGC 2 cut(s) 201, 475
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 25, 73, 274
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 3 cut(s) 526, 664, 709
BspTNI GGTCTC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 848
BsrI ACTGG 3 cut(s) 495, 929, 1032
BssECI CCNNGG 2 cut(s) 555, 952
BssMI GATC 4 cut(s) 518, 669, 701, 751
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 4 cut(s) 265, 347, 744, 1126
Bst6I CTCTTC 2 cut(s) 383, 641
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 5 cut(s) 18, 205, 715, 765, 949
BstDEI CTNAG 6 cut(s) 33, 81, 282, 365, 827, 1005
BstEII GGTNACC 1 cut(s) 1097
BstF5I GGATG 5 cut(s) 196, 197, 415, 565, 586
BstKTI GATC 4 cut(s) 521, 672, 704, 754
BstMAI GTCTC 2 cut(s) 278, 825
BstMBI GATC 4 cut(s) 518, 669, 701, 751
BstMWI GCNNNNNNNGC 5 cut(s) 467, 773, 890, 986, 995
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 1097
BstSCI CCNGG 1 cut(s) 952
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 6 cut(s) 221, 747, 865, 868, 985, 988
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 518, 751
BstYI RGATCY 2 cut(s) 518, 751
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 5 cut(s) 196, 197, 415, 565, 586
BtsIMutI CAGTG 3 cut(s) 270, 279, 502
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 5 cut(s) 18, 205, 715, 765, 949
CaiI CAGNNNCTG 1 cut(s) 862
Csp6I GTAC 1 cut(s) 1173
CviAII CATG 3 cut(s) 216, 682, 727
CviQI GTAC 1 cut(s) 1173
DdeI CTNAG 6 cut(s) 33, 81, 282, 365, 827, 1005
DpnI GATC 4 cut(s) 520, 671, 703, 753
DpnII GATC 4 cut(s) 518, 669, 701, 751
DriI GACNNNNNGTC 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 383, 641
Eam1105I GACNNNNNGTC 1 cut(s) 1095
EarI CTCTTC 2 cut(s) 383, 641
Eco130I CCWWGG 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 825
Eco57I CTGAAG 3 cut(s) 294, 884, 1044
Eco72I CACGTG 1 cut(s) 803
Eco91I GGTNACC 1 cut(s) 1097
EcoO65I GGTNACC 1 cut(s) 1097
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 3 cut(s) 219, 685, 730
FaiI YATR 8 cut(s) 111, 217, 464, 482, 606, 660, 683, 728
FaqI GGGAC 3 cut(s) 171, 373, 1128
FatI CATG 3 cut(s) 215, 681, 726
Fnu4HI GCNGC 6 cut(s) 235, 761, 854, 857, 999, 1002
FokI GGATG 5 cut(s) 184, 203, 422, 572, 593
Fsp4HI GCNGC 6 cut(s) 235, 761, 854, 857, 999, 1002
FspBI CTAG 3 cut(s) 779, 914, 939
GluI GCNGC 6 cut(s) 235, 761, 854, 857, 999, 1002
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 242, 990
Hin1II CATG 3 cut(s) 219, 685, 730
HincII GTYRAC 1 cut(s) 1133
HindII GTYRAC 1 cut(s) 1133
HinfI GANTC 7 cut(s) 56, 68, 128, 361, 449, 869, 1049
HpaII CCGG 2 cut(s) 242, 990
HphI GGTGA 4 cut(s) 123, 231, 545, 1091
Hpy166II GTNNAC 2 cut(s) 350, 1133
Hpy188I TCNGA 3 cut(s) 34, 154, 864
Hpy188III TCNNGA 3 cut(s) 506, 749, 972
Hpy8I GTNNAC 2 cut(s) 350, 1133
HpyAV CCTTC 8 cut(s) 150, 369, 388, 648, 859, 1068, 1147, 1152
HpyCH4III ACNGT 4 cut(s) 265, 347, 744, 1126
HpyCH4IV ACGT 2 cut(s) 802, 1117
HpyCH4V TGCA 6 cut(s) 102, 530, 713, 853, 893, 1046
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 773, 890, 986, 995
HpyF3I CTNAG 6 cut(s) 33, 81, 282, 365, 827, 1005
HpySE526I ACGT 2 cut(s) 802, 1117
Hsp92II CATG 3 cut(s) 219, 685, 730
Kzo9I GATC 4 cut(s) 518, 669, 701, 751
Lsp1109I GCAGC 6 cut(s) 221, 747, 865, 868, 985, 988
LweI GCATC 3 cut(s) 111, 448, 868
MaeI CTAG 3 cut(s) 779, 914, 939
MaeII ACGT 2 cut(s) 802, 1117
MaeIII GTNAC 2 cut(s) 1078, 1097
MalI GATC 4 cut(s) 520, 671, 703, 753
MboI GATC 4 cut(s) 518, 669, 701, 751
MboII GAAGA 7 cut(s) 17, 287, 400, 513, 658, 663, 1044
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 518, 751
MhlI GDGCHC 2 cut(s) 800, 949
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 3 cut(s) 330, 593, 708
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 558
Mox20I TGGCCA 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 744
MscI TGGCCA 1 cut(s) 120
MseI TTAA 4 cut(s) 75, 414, 735, 933
MslI CAYNNNNRTG 3 cut(s) 244, 609, 916
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 3 cut(s) 203, 272, 455
MspI CCGG 2 cut(s) 242, 990
MspR9I CCNGG 1 cut(s) 954
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 954
MwoI GCNNNNNNNGC 5 cut(s) 467, 773, 890, 986, 995
NdeII GATC 4 cut(s) 518, 669, 701, 751
NlaIII CATG 3 cut(s) 219, 685, 730
NmuCI GTSAC 2 cut(s) 1078, 1097
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 916
PaqCI CACCTGC 1 cut(s) 521
PciI ACATGT 1 cut(s) 215
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 6 cut(s) 56, 68, 128, 449, 869, 1049
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 6 cut(s) 236, 762, 855, 858, 1000, 1003
PleI GAGTC 1 cut(s) 355
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 803
PscI ACATGT 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 952
PspCI CACGTG 1 cut(s) 803
PspEI GGTNACC 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 2 cut(s) 518, 751
PvuII CAGCTG 2 cut(s) 272, 455
RsaI GTAC 1 cut(s) 1174
RsaNI GTAC 1 cut(s) 1173
RseI CAYNNNNRTG 3 cut(s) 244, 609, 916
SaqAI TTAA 4 cut(s) 75, 414, 735, 933
SatI GCNGC 6 cut(s) 235, 761, 854, 857, 999, 1002
Sau3AI GATC 4 cut(s) 518, 669, 701, 751
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 954
SduI GDGCHC 2 cut(s) 800, 949
SfaNI GCATC 3 cut(s) 111, 448, 868
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 3 cut(s) 244, 609, 916
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 3 cut(s) 330, 593, 708
SsiI CCGC 2 cut(s) 201, 475
SspMI CTAG 3 cut(s) 779, 914, 939
StyD4I CCNGG 1 cut(s) 952
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 4 cut(s) 265, 347, 744, 1126
TaiI ACGT 2 cut(s) 805, 1120
TaqI TCGA 3 cut(s) 631, 748, 971
TasI AATT 3 cut(s) 330, 593, 708
TfiI GAWTC 6 cut(s) 56, 68, 128, 449, 869, 1049
Tru1I TTAA 4 cut(s) 75, 414, 735, 933
Tru9I TTAA 4 cut(s) 75, 414, 735, 933
TscAI CASTG 3 cut(s) 270, 286, 502
TseFI GTSAC 2 cut(s) 1078, 1097
TseI GCWGC 6 cut(s) 234, 760, 853, 856, 998, 1001
Tsp45I GTSAC 2 cut(s) 1078, 1097
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 3 cut(s) 270, 286, 502
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 3 cut(s) 779, 914, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.