AT1G62710

Peptidase C13 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
23223874 .. 23226983
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62710.1

Sequence Viewer

Length: 1461 bp
ATGGCTAAGTCTTGCTATTTCAGACCAGCTCTTCTTCTTCTGTTAGTTCTTTTGGTTCATGCCGAGTCACGCGGTCGGTTCGAGCCAAAGATTCTTATGCCGACAGAGGAAGCTAACCCGGCTGACCAAGACGAAGATGGTGTCGGTACAAGATGGGCGGTTCTCGTCGCTGGTTCTTCTGGATATGGAAACTACAGACACCAGGCTGACGTGTGTCACGCATATCAAATACTAAGAAAAGGAGGTTTAAAGGAAGAAAACATAGTCGTTTTGATGTATGATGATATCGCAAACCACCCACTTAATCCTCGTCCGGGTACTCTCATCAACCATCCTGACGGTGACGATGTTTACGCCGGAGTCCCTAAGGACTATACTGGTAGTAGCGTTACGGCTGCAAACTTCTACGCTGTACTCCTAGGCGACCAGAAGGCTGTTAAAGGTGGAAGCGGTAAGGTCATCGCTAGCAAGCCCAACGATCACATTTTCGTATATTATGCGGATCATGGTGGTCCCGGAGTTCTTGGGATGCCAAATACGCCTCACATATATGCAGCTGATTTTATTGAAACGCTTAAGAAGAAGCATGCTTCCGGAACATACAAAGAGATGGTTATATACGTAGAAGCGTGTGAAAGTGGGAGTATTTTCGAAGGGATAATGCCAAAGGACTTGAACATTTACGTAACAACGGCTTCAAATGCACAAGAGAGTAGTTATGGAACATATTGTCCTGGCATGAATCCGTCACCCCCATCTGAATATATCACTTGCTTAGGGGATTTATATAGTGTTGCTTGGATGGAAGATAGTGAGACTCACAATTTAAAGAAAGAGACCATAAAGCAACAATACCACACGGTGAAGATGAGGACATCAAACTACAATACCTACTCAGGTGGCTCTCATGTGATGGAATACGGTAACAATAGTATTAAGTCGGAGAAGCTTTATCTTTACCAAGGGTTTGATCCAGCCACCGTTAATCTCCCACTAAACGAATTACCGGTCAAGTCAAAAATAGGAGTCGTTAACCAACGCGACGCGGACCTTCTCTTCCTTTGGCATATGTATCGGACATCGGAAGATGGGTCAAGGAAGAAGGATGACACATTGAAGGAATTAACTGAGACAACAAGGCATAGGAAACATTTAGATGCAAGCGTCGAATTGATAGCCACAATTTTGTTTGGTCCGACGATGAATGTTCTTAACTTGGTTAGAGAACCCGGTTTGCCTTTGGTTGACGATTGGGAATGTCTTAAATCGATGGTACGTGTATTTGAAGAGCATTGTGGATCACTAACGCAATATGGGATGAAACATATGCGAGCGTTTGCAAACGTTTGTAACAACGGTGTGTCCAAAGAGCTGATGGAGGAAGCTTCTACTGCGGCATGCGGTGGTTATAGTGAGGCTCGCTACACGGTGCATCCATCAATCTTAGGCTATAGCGCCTGA

Protein Analysis

486

Amino Acids

53.83

Weight (kDa)

5.84

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 51 - 322 4.2e-117 Peptidase C13 family
Legum_prodom PF20985 373 - 467 3e-39 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62710
fragaria_vesca FvH4_5g00370
malus_domestica MD04G1082300.v1.1
prunus_persica Prupe.5G076300_v2.0.a1
pyrus_communis pycom04g07400
rosa_chinensis RchiOBHm_Chr7g0202151
rosa_laevigata RLG00000003621
rosa_multiflora Rmu_sc0000018.1_g000001 Rmu_sc0003823.1_g000019
rosa_roxburghii Rroxscaffold_3G00254800
rosa_rugosa Rorug07G0068500
rosa_samantha Rh7AG195900 Rh7BG197200 Rh7CG207000 Rh7DG202500
rosa_wichuraiana Rw7G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 72, 1041, 1046
AccIII TCCGGA 1 cut(s) 593
AciI CCGC 7 cut(s) 72, 158, 450, 500, 1046, 1394, 1401
AclI AACGTT 1 cut(s) 1344
AclWI GGATC 3 cut(s) 510, 965, 1306
AdeI CACNNNGTG 1 cut(s) 862
AfaI GTAC 4 cut(s) 148, 319, 414, 1275
AfiI CCNNNNNNNGG 1 cut(s) 314
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 2 cut(s) 210, 1276
AgeI ACCGGT 1 cut(s) 1006
AgsI TTSAA 5 cut(s) 569, 676, 699, 1117, 1286
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 2 cut(s) 201, 733
AloI GAACNNNNNNTCC 2 cut(s) 715, 747
AluBI AGCT 6 cut(s) 29, 113, 557, 949, 1372, 1385
AluI AGCT 6 cut(s) 29, 113, 557, 949, 1372, 1385
Alw26I GTCTC 3 cut(s) 809, 830, 1124
AlwI GGATC 3 cut(s) 510, 965, 1306
Aor13HI TCCGGA 1 cut(s) 593
ApeKI GCWGC 2 cut(s) 395, 554
ArsI GACNNNNNNTTYG 4 cut(s) 126, 158, 993, 1025
AsiGI ACCGGT 1 cut(s) 1006
AspA2I CCTAGG 1 cut(s) 418
AspLEI GCGC 1 cut(s) 1457
AspS9I GGNCC 3 cut(s) 512, 1048, 1193
AsuC2I CCSGG 4 cut(s) 119, 315, 516, 1230
AsuHPI GGTGA 3 cut(s) 353, 741, 874
AsuII TTCGAA 1 cut(s) 651
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 3 cut(s) 512, 1048, 1193
AvrII CCTAGG 1 cut(s) 418
AxyI CCTNAGG 1 cut(s) 366
BbvI GCAGC 2 cut(s) 382, 566
BceAI ACGGC 2 cut(s) 408, 708
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 2 cut(s) 203, 735
BcnI CCSGG 4 cut(s) 119, 315, 516, 1230
BcoDI GTCTC 3 cut(s) 809, 830, 1124
BfaI CTAG 2 cut(s) 419, 465
BfmI CTRYAG 2 cut(s) 193, 1450
BfoI RGCGCY 1 cut(s) 1458
BfrI CTTAAG 1 cut(s) 575
BisI GCNGC 3 cut(s) 396, 555, 1395
BlnI CCTAGG 1 cut(s) 418
BlsI GCNGC 3 cut(s) 397, 556, 1396
Bme1390I CCNGG 6 cut(s) 119, 203, 315, 516, 735, 1230
Bme18I GGWCC 3 cut(s) 512, 1048, 1193
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 512, 1048, 1193
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 6 cut(s) 119, 203, 315, 516, 735, 1230
BmsI GCATC 3 cut(s) 519, 1147, 1441
BmtI GCTAGC 1 cut(s) 468
BoxI GACNNNNGTC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 775
Bpu14I TTCGAA 1 cut(s) 651
BpuMI CCSGG 4 cut(s) 119, 315, 516, 1230
Bsa29I ATCGAT 1 cut(s) 1268
BsaAI YACGTR 3 cut(s) 622, 685, 1277
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 418, 961
BsaWI WCCGGW 2 cut(s) 593, 1006
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 593
BseBI CCWGG 2 cut(s) 203, 735
BseCI ATCGAT 1 cut(s) 1268
BseDI CCNNGG 2 cut(s) 418, 961
BseGI GGATG 6 cut(s) 331, 534, 807, 1111, 1323, 1432
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 909, 1119
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 382, 566
Bsh1236I CGCG 3 cut(s) 72, 1041, 1046
Bsh1285I CGRYCG 1 cut(s) 76
BshTI ACCGGT 1 cut(s) 1006
BshVI ATCGAT 1 cut(s) 1268
BsiEI CGRYCG 1 cut(s) 76
BsiSI CCGG 7 cut(s) 119, 314, 357, 516, 594, 1007, 1230
BslFI GGGAC 2 cut(s) 347, 498
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 3 cut(s) 809, 830, 1124
BsmFI GGGAC 2 cut(s) 347, 498
Bso31I GGTCTC 1 cut(s) 830
Bsp119I TTCGAA 1 cut(s) 651
Bsp13I TCCGGA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 478, 502, 970, 1298
BspACI CCGC 7 cut(s) 72, 158, 450, 500, 1046, 1394, 1401
BspCNI CTCAG 2 cut(s) 908, 1120
BspDI ATCGAT 1 cut(s) 1268
BspEI TCCGGA 1 cut(s) 593
BspFNI CGCG 3 cut(s) 72, 1041, 1046
BspLI GGNNCC 1 cut(s) 514
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 3 cut(s) 510, 965, 1306
BspQI GCTCTTC 2 cut(s) 36, 1281
BspT104I TTCGAA 1 cut(s) 651
BspTI CTTAAG 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 2 cut(s) 418, 961
BssMI GATC 4 cut(s) 478, 502, 970, 1298
BssT1I CCWWGG 2 cut(s) 418, 961
Bst2UI CCWGG 2 cut(s) 203, 735
Bst4CI ACNGT 6 cut(s) 341, 862, 923, 982, 1358, 1429
Bst6I CTCTTC 3 cut(s) 36, 1061, 1281
BstAFI CTTAAG 1 cut(s) 575
BstBAI YACGTR 3 cut(s) 622, 685, 1277
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 7 cut(s) 466, 470, 588, 1162, 1332, 1399, 1420
BstDEI CTNAG 7 cut(s) 6, 233, 366, 775, 895, 1128, 1444
BstF5I GGATG 6 cut(s) 331, 534, 807, 1111, 1323, 1432
BstFNI CGCG 3 cut(s) 72, 1041, 1046
BstH2I RGCGCY 1 cut(s) 1458
BstHHI GCGC 1 cut(s) 1457
BstKTI GATC 4 cut(s) 481, 505, 973, 1301
BstMAI GTCTC 3 cut(s) 809, 830, 1124
BstMBI GATC 4 cut(s) 478, 502, 970, 1298
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 119, 538, 701, 1391
BstNI CCWGG 2 cut(s) 203, 735
BstNSI RCATGY 2 cut(s) 590, 1401
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 6 cut(s) 117, 201, 313, 514, 733, 1228
BstSFI CTRYAG 2 cut(s) 193, 1450
BstSNI TACGTA 2 cut(s) 622, 685
BstUI CGCG 3 cut(s) 72, 1041, 1046
BstV1I GCAGC 2 cut(s) 382, 566
Bsu15I ATCGAT 1 cut(s) 1268
Bsu36I CCTNAGG 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 1268
BtgZI GCGATG 1 cut(s) 445
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 6 cut(s) 331, 534, 807, 1111, 1323, 1432
Cac8I GCNNGC 7 cut(s) 466, 470, 588, 1162, 1332, 1399, 1420
CfoI GCGC 1 cut(s) 1457
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 3 cut(s) 512, 1048, 1193
ClaI ATCGAT 1 cut(s) 1268
CseI GACGC 2 cut(s) 1052, 1153
Csp6I GTAC 4 cut(s) 147, 318, 413, 1274
CspAI ACCGGT 1 cut(s) 1006
CviAII CATG 6 cut(s) 59, 506, 587, 739, 908, 1398
CviQI GTAC 4 cut(s) 147, 318, 413, 1274
DdeI CTNAG 7 cut(s) 6, 233, 366, 775, 895, 1128, 1444
DpnI GATC 4 cut(s) 480, 504, 972, 1300
DpnII GATC 4 cut(s) 478, 502, 970, 1298
DraI TTTAAA 2 cut(s) 249, 828
DraIII CACNNNGTG 1 cut(s) 862
Eam1104I CTCTTC 3 cut(s) 36, 1061, 1281
EarI CTCTTC 3 cut(s) 36, 1061, 1281
Eco105I TACGTA 2 cut(s) 622, 685
Eco130I CCWWGG 2 cut(s) 418, 961
Eco31I GGTCTC 1 cut(s) 830
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 512, 1048, 1193
Eco81I CCTNAGG 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 201, 733
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 418, 961
ErhI CCWWGG 2 cut(s) 418, 961
FaeI CATG 6 cut(s) 62, 509, 590, 742, 911, 1401
FaqI GGGAC 2 cut(s) 347, 498
FatI CATG 6 cut(s) 58, 505, 586, 738, 907, 1397
FauNDI CATATG 2 cut(s) 1068, 1326
Fnu4HI GCNGC 3 cut(s) 396, 555, 1395
FokI GGATG 6 cut(s) 318, 541, 814, 1118, 1330, 1419
Fsp4HI GCNGC 3 cut(s) 396, 555, 1395
FspBI CTAG 2 cut(s) 419, 465
GlaI GCGC 1 cut(s) 1456
GluI GCNGC 3 cut(s) 396, 555, 1395
HaeII RGCGCY 1 cut(s) 1458
HapII CCGG 7 cut(s) 119, 314, 357, 516, 594, 1007, 1230
HgaI GACGC 2 cut(s) 1052, 1153
HhaI GCGC 1 cut(s) 1457
Hin1II CATG 6 cut(s) 62, 509, 590, 742, 911, 1401
Hin6I GCGC 1 cut(s) 1455
HinP1I GCGC 1 cut(s) 1455
HincII GTYRAC 2 cut(s) 1033, 1246
HindII GTYRAC 2 cut(s) 1033, 1246
HindIII AAGCTT 2 cut(s) 947, 1383
HinfI GANTC 6 cut(s) 65, 91, 360, 742, 817, 1026
HpaI GTTAAC 1 cut(s) 1033
HpaII CCGG 7 cut(s) 119, 314, 357, 516, 594, 1007, 1230
HphI GGTGA 3 cut(s) 353, 741, 874
Hpy166II GTNNAC 3 cut(s) 352, 1033, 1246
Hpy188I TCNGA 6 cut(s) 23, 760, 943, 1077, 1084, 1197
Hpy188III TCNNGA 3 cut(s) 180, 335, 594
Hpy8I GTNNAC 3 cut(s) 352, 1033, 1246
Hpy99I CGWCG 4 cut(s) 170, 1046, 1169, 1201
HpyAV CCTTC 5 cut(s) 424, 647, 1061, 1096, 1111
HpyCH4III ACNGT 6 cut(s) 341, 862, 923, 982, 1358, 1429
HpyCH4IV ACGT 5 cut(s) 210, 621, 684, 1276, 1344
HpyCH4V TGCA 6 cut(s) 398, 554, 704, 1160, 1340, 1432
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 538, 701, 1391
HpyF3I CTNAG 7 cut(s) 6, 233, 366, 775, 895, 1128, 1444
HpySE526I ACGT 5 cut(s) 210, 621, 684, 1276, 1344
Hsp92II CATG 6 cut(s) 62, 509, 590, 742, 911, 1401
HspAI GCGC 1 cut(s) 1455
Kpn2I TCCGGA 1 cut(s) 593
KspAI GTTAAC 1 cut(s) 1033
Kzo9I GATC 4 cut(s) 478, 502, 970, 1298
LguI GCTCTTC 2 cut(s) 36, 1281
Lsp1109I GCAGC 2 cut(s) 382, 566
LweI GCATC 3 cut(s) 519, 1147, 1441
MaeI CTAG 2 cut(s) 419, 465
MaeII ACGT 5 cut(s) 210, 621, 684, 1276, 1344
MaeIII GTNAC 8 cut(s) 66, 215, 341, 388, 685, 747, 923, 1349
MalI GATC 4 cut(s) 480, 504, 972, 1300
MboI GATC 4 cut(s) 478, 502, 970, 1298
MluCI AATT 5 cut(s) 823, 1001, 1121, 1169, 1182
MlyI GAGTC 4 cut(s) 74, 369, 811, 1035
MmeI TCCRAC 2 cut(s) 921, 1220
MnlI CCTC 7 cut(s) 100, 236, 318, 552, 864, 1372, 1408
MroI TCCGGA 1 cut(s) 593
MslI CAYNNNNRTG 2 cut(s) 549, 1155
MspA1I CMGCKG 1 cut(s) 557
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 7 cut(s) 119, 314, 357, 516, 594, 1007, 1230
MspR9I CCNGG 6 cut(s) 119, 203, 315, 516, 735, 1230
MvaI CCWGG 2 cut(s) 203, 735
MvnI CGCG 3 cut(s) 72, 1041, 1046
MwoI GCNNNNNNNGC 4 cut(s) 119, 538, 701, 1391
NciI CCSGG 4 cut(s) 119, 315, 516, 1230
NdeI CATATG 2 cut(s) 1068, 1326
NdeII GATC 4 cut(s) 478, 502, 970, 1298
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 6 cut(s) 62, 509, 590, 742, 911, 1401
NlaIV GGNNCC 1 cut(s) 514
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 4 cut(s) 66, 215, 341, 747
NspI RCATGY 2 cut(s) 590, 1401
NspV TTCGAA 1 cut(s) 651
PaeI GCATGC 2 cut(s) 590, 1401
PciSI GCTCTTC 2 cut(s) 36, 1281
PfeI GAWTC 2 cut(s) 91, 742
PfoI TCCNGGA 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 1006
PkrI GCNGC 3 cut(s) 397, 556, 1396
PleI GAGTC 4 cut(s) 73, 368, 811, 1034
PpsI GAGTC 4 cut(s) 73, 368, 811, 1034
Ppu21I YACGTR 3 cut(s) 622, 685, 1277
PshAI GACNNNNGTC 1 cut(s) 213
Psp1406I AACGTT 1 cut(s) 1344
Psp6I CCWGG 2 cut(s) 201, 733
PspGI CCWGG 2 cut(s) 201, 733
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 3 cut(s) 512, 1048, 1193
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 4 cut(s) 148, 319, 414, 1275
RsaNI GTAC 4 cut(s) 147, 318, 413, 1274
RseI CAYNNNNRTG 2 cut(s) 549, 1155
SapI GCTCTTC 2 cut(s) 36, 1281
SatI GCNGC 3 cut(s) 396, 555, 1395
Sau3AI GATC 4 cut(s) 478, 502, 970, 1298
Sau96I GGNCC 3 cut(s) 512, 1048, 1193
SchI GAGTC 4 cut(s) 74, 369, 811, 1035
ScrFI CCNGG 6 cut(s) 119, 203, 315, 516, 735, 1230
SfaNI GCATC 3 cut(s) 519, 1147, 1441
SfcI CTRYAG 2 cut(s) 193, 1450
SfuI TTCGAA 1 cut(s) 651
SinI GGWCC 3 cut(s) 512, 1048, 1193
SmiMI CAYNNNNRTG 2 cut(s) 549, 1155
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SnaBI TACGTA 2 cut(s) 622, 685
SphI GCATGC 2 cut(s) 590, 1401
Sse9I AATT 5 cut(s) 823, 1001, 1121, 1169, 1182
SsiI CCGC 7 cut(s) 72, 158, 450, 500, 1046, 1394, 1401
SspMI CTAG 2 cut(s) 419, 465
StyD4I CCNGG 6 cut(s) 117, 201, 313, 514, 733, 1228
StyI CCWWGG 2 cut(s) 418, 961
TaaI ACNGT 6 cut(s) 341, 862, 923, 982, 1358, 1429
TaiI ACGT 5 cut(s) 213, 624, 687, 1279, 1347
TaqI TCGA 4 cut(s) 81, 651, 1167, 1268
TasI AATT 5 cut(s) 823, 1001, 1121, 1169, 1182
TatI WGTACW 1 cut(s) 412
TauI GCSGC 1 cut(s) 1397
TfiI GAWTC 2 cut(s) 91, 742
TseFI GTSAC 4 cut(s) 66, 215, 341, 747
TseI GCWGC 2 cut(s) 395, 554
Tsp45I GTSAC 4 cut(s) 66, 215, 341, 747
TspDTI ATGAA 4 cut(s) 47, 755, 1217, 1334
TspGWI ACGGA 1 cut(s) 735
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 3 cut(s) 512, 1048, 1193
XceI RCATGY 2 cut(s) 590, 1401
XcmI CCANNNNNNNNNTGG 2 cut(s) 134, 1372
XmaJI CCTAGG 1 cut(s) 418
XspI CTAG 2 cut(s) 419, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.