Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015210

Physical Location & Seq

Genomic Coordinates Forward (+)

5209073 .. 5209435

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTGGCTGACCTTGCCTGAGCAAGTTTACGGATTTTACAAAGATAGTAGCAAGCTCGCTCGTCCTGAAGATAATGGAGTCATGAGCATTACAACCACCAAAGAAAAAATCAAAGAGAAGTTGATAGCTCTTCAAAATCTCTGTACTTGGAGATCCTTGCATGTGGTAAATGTTGATGCTCAAGAACATTCTTGTAGTGGGGGAATTTTCGTCGTAGTAACTAGGTATTTAACTGAAGAAGACAATCAAGGGAAGAAATTTGTTCAGAATTTTTTCTTGGCTCCACAAGCCGAAGGAGGCTACTTTGTTGAGAGCGATGTTTTGAGCTATCCAGATACTTTGAGTTTGAATAGCTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006624 GO:0006807 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016043 GO:0016485 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0051604 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990019

KEGG Pathways

Metabolic & Signaling

ko04142 ko04612 map04142 map04612

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

120

Amino Acids

13.66

Weight (kDa)

5.08

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	6 - 109	1.1e-16	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62710
fragaria_vesca	FvH4_5g00370
malus_domestica	MD04G1082300.v1.1
prunus_persica	Prupe.5G076300_v2.0.a1
pyrus_communis	pycom04g07400
rosa_chinensis	RchiOBHm_Chr7g0202151
rosa_laevigata	RLG00000003621
rosa_multiflora	Rmu_sc0000018.1_g000001 Rmu_sc0003823.1_g000019
rosa_roxburghii	Rroxscaffold_3G00254800
rosa_rugosa	Rorug07G0068500
rosa_samantha	Rh7AG195900 Rh7BG197200 Rh7CG207000 Rh7DG202500
rosa_wichuraiana	Rw7G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	204, 257, 268
AcuI	CTGAAG	2 cut(s)	87, 255
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	134, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	55, 128, 327, 354
AluI	AGCT	4 cut(s)	55, 128, 327, 354
AlwI	GGATC	1 cut(s)	147
ApoI	RAATTY	3 cut(s)	204, 257, 268
Asp700I	GAANNNNTTC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	135
BssMI	GATC	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	53, 57, 356
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 287
BstNSI	RCATGY	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	330
Cac8I	GCNNGC	3 cut(s)	53, 57, 356
CciI	TCATGA	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	82, 161
CviJI	RGCY	9 cut(s)	7, 55, 128, 281, 290, 300, 327, 354, 358
CviKI_1	RGCY	9 cut(s)	7, 55, 128, 281, 290, 300, 327, 354, 358
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	87, 255
FaeI	CATG	2 cut(s)	85, 164
FaiI	YATR	2 cut(s)	83, 162
FatI	CATG	2 cut(s)	81, 160
FspBI	CTAG	1 cut(s)	222
Hin1II	CATG	2 cut(s)	85, 164
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	4 cut(s)	65, 82, 182, 332
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 287
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	85, 164
Kzo9I	GATC	1 cut(s)	152
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	4 cut(s)	30, 78, 340, 345
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	5 cut(s)	80, 122, 248, 251, 265
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	3 cut(s)	204, 257, 268
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	13, 287
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	85, 164
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	164
PagI	TCATGA	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	87
SetI	ASST	6 cut(s)	14, 57, 130, 227, 329, 356
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	3 cut(s)	204, 257, 268
SspMI	CTAG	1 cut(s)	222
TasI	AATT	3 cut(s)	204, 257, 268
TatI	WGTACW	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	45
XapI	RAATTY	3 cut(s)	204, 257, 268
XceI	RCATGY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.