Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015210

Physical Location & Seq

Genomic Coordinates Forward (+)

18488284 .. 18492573

Gene Structure 4290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCGGTCCGTCTGTCTAAGCTGCTGGTTCTCTTTGTAGCACTGGTTATACAAACCACTATAGGAGGAGGAGGTCGAGCCGCCGCTAGGCTCGACTTCTGGGACTCTGCAATCCGGTTGCCTTCGGAGAAGGATAAGACCGAAGGTACTGATAAACAATCCGGGACAACATGGGCGGTTCTCGTAGCCGGTTCAAAGGGTTATGGAAATTACAGGCATCAGGCGGATGTTTGTCACGCATATCAGATACTGAGCAAAGGAGGGCTGAAGGAGGAGAACATAGTGGTGTTCATGTATGATGACATCGCCATGCATGAGATGAATCCCAGGAAAGGCATCATCATCAACCATCCACAAGGTCATGATGTATATGCCGGCGTCCCAAAGGATTACACTGGTGCGCATGTAACTGCTGCGAACCTGTATGCAGTACTTCTTGGGGACAAGAAGGCTGTGAAAGGTGGAAGTGGGAAGGTTGTGGCTAGCAAACCTAATGACAGGATCTTCTTATTCTACTCGGATCATGGTGGTCCTGGTGTTCTTGGTGAGTTCCCAACTTTCTCATGTTACTGTGATGTATCAAAACTCATATTAATTTGGACAGAACTCCTCCTCCTTTTCAAGACAACTTTGTCAGCCTTACTGCTCTTTTCAGATGTGATCAAATTTTTAGAAAGAAAATGTTATATACTTAAAGCTACAACTCACCAATTTTCAATTATAGGAATGCCAAATATGCCTTTTCTGTATGCAATGGATTTCATTAAGGTTTTGAAGAAGAAACATGCATCTGGGAGCTACAAAGAGATGGTTATATATGTAGAAGCATGTGAGAGTGGGAGCGTTTTTGAAGGAATAATGCCAAGTGACCTTAACATTTACGTGACTACAGCATCAAATGCAGAGGAAAACAGCTTTGGGACTTACTGTCCTGGGATGAACCCTCCACCACCACCTGAATACATCACTTGCTTAGGGGATTTGTACAGTGTTGCTTGGATGGAGGACAGTGAGATACACAATCTGAAGAAAGAAACATTAAAACAACAATACCTGACGGTAAAGAAACGGACTTCGAATTTTAATAACTACAATATTGGATCTCATGTGATGCAATATGGAAATAAAAATCTCACAGAAGAGAAGCTCTACTTGTACCTTGGCTTTGATCCCGCCTCTGCGAACTTCCCTCCAAACAATGGTCAACTAGAACAGCACATGGAAGTTGTCAACCAGAGAGATGCAGAGATTTTCTTCATGTGGCAATTGGTGAGCTTCTCCCCTCATTTTTTTTTTTCGTTTTTCACACGAACAAAAAACCAACAGAATCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006624 GO:0006807 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016043 GO:0016485 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0051604 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990019

KEGG Pathways

Metabolic & Signaling

ko04142 ko04612 map04142 map04612

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

445

Amino Acids

49.93

Weight (kDa)

7.22

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	57 - 182	9e-59	Peptidase C13 family
Peptidase_C13	PF01650	240 - 388	4.7e-49	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62710
fragaria_vesca	FvH4_5g00370
malus_domestica	MD04G1082300.v1.1
prunus_persica	Prupe.5G076300_v2.0.a1
pyrus_communis	pycom04g07400
rosa_chinensis	RchiOBHm_Chr7g0202151
rosa_laevigata	RLG00000003621
rosa_multiflora	Rmu_sc0000018.1_g000001 Rmu_sc0003823.1_g000019
rosa_roxburghii	Rroxscaffold_3G00254800
rosa_rugosa	Rorug07G0068500
rosa_samantha	Rh7AG195900 Rh7BG197200 Rh7CG207000 Rh7DG202500
rosa_wichuraiana	Rw7G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
Acc16I	TGCGCA	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	1199
AciI	CCGC	6 cut(s)	5, 81, 84, 176, 224, 1173
AclWI	GGATC	4 cut(s)	509, 528, 1108, 1163
AcsI	RAATTY	2 cut(s)	665, 1078
AcuI	CTGAAG	2 cut(s)	287, 1046
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	4 cut(s)	148, 432, 986, 1157
AfiI	CCNNNNNNNGG	3 cut(s)	87, 332, 1199
AgsI	TTSAA	5 cut(s)	195, 622, 717, 775, 851
AhdI	GACNNNNNGTC	1 cut(s)	927
AjnI	CCWGG	3 cut(s)	326, 532, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	900, 932
AloI	GAACNNNNNNTCC	2 cut(s)	597, 629
AluBI	AGCT	6 cut(s)	22, 698, 798, 915, 1147, 1275
AluI	AGCT	6 cut(s)	22, 698, 798, 915, 1147, 1275
AlwI	GGATC	4 cut(s)	509, 528, 1108, 1163
AlwNI	CAGNNNCTG	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	22, 413
ApoI	RAATTY	2 cut(s)	665, 1078
AseI	ATTAAT	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	7, 530
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	557, 698, 1282
AsuII	TTCGAA	1 cut(s)	1076
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	7, 530
BbvI	GCAGC	2 cut(s)	9, 400
BccI	CCATC	3 cut(s)	357, 802, 994
BciT130I	CCWGG	3 cut(s)	328, 534, 933
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	3 cut(s)	87, 483, 1208
BfmI	CTRYAG	2 cut(s)	60, 888
BisI	GCNGC	4 cut(s)	23, 81, 84, 414
BlsI	GCNGC	4 cut(s)	24, 82, 85, 415
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	4 cut(s)	163, 328, 534, 933
Bme18I	GGWCC	2 cut(s)	7, 530
BmeRI	GACNNNNNGTC	1 cut(s)	927
BmgT120I	GGNCC	2 cut(s)	7, 530
BmrFI	CCNGG	4 cut(s)	163, 328, 534, 933
BmsI	GCATC	6 cut(s)	226, 345, 797, 902, 1101, 1231
BmtI	GCTAGC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	973
Bpu14I	TTCGAA	1 cut(s)	1076
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	883
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	326, 932, 1159
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 332, 1199
Bse118I	RCCGGY	2 cut(s)	188, 374
Bse1I	ACTGG	2 cut(s)	48, 400
Bse3DI	GCAATG	1 cut(s)	759
BseBI	CCWGG	3 cut(s)	328, 534, 933
BseDI	CCNNGG	3 cut(s)	326, 932, 1159
BseGI	GGATG	4 cut(s)	232, 349, 942, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	87, 332, 1199
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	48, 400
BseRI	GAGGAG	5 cut(s)	81, 84, 287, 599, 602
BseXI	GCAGC	2 cut(s)	9, 400
BsiSI	CCGG	4 cut(s)	115, 162, 189, 375
BslFI	GGGAC	5 cut(s)	116, 178, 365, 455, 934
BslI	CCNNNNNNNGG	3 cut(s)	87, 332, 1199
BsmFI	GGGAC	5 cut(s)	116, 178, 365, 455, 934
BsmI	GAATGC	1 cut(s)	732
Bsp119I	TTCGAA	1 cut(s)	1076
Bsp1407I	TGTACA	1 cut(s)	984
Bsp143I	GATC	5 cut(s)	501, 520, 660, 1100, 1168
BspACI	CCGC	6 cut(s)	5, 81, 84, 176, 224, 1173
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	4 cut(s)	509, 528, 1108, 1163
BspT104I	TTCGAA	1 cut(s)	1076
BsrDI	GCAATG	1 cut(s)	759
BsrFI	RCCGGY	2 cut(s)	188, 374
BsrGI	TGTACA	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	48, 400
BssAI	RCCGGY	2 cut(s)	188, 374
BssECI	CCNNGG	3 cut(s)	326, 932, 1159
BssMI	GATC	5 cut(s)	501, 520, 660, 1100, 1168
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	1159
Bst2UI	CCWGG	3 cut(s)	328, 534, 933
Bst4CI	ACNGT	5 cut(s)	572, 929, 989, 1010, 1060
Bst6I	CTCTTC	1 cut(s)	1134
BstACI	GRCGYC	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstAUI	TGTACA	1 cut(s)	984
BstBAI	YACGTR	1 cut(s)	883
BstBI	TTCGAA	1 cut(s)	1076
BstC8I	GCNNGC	2 cut(s)	376, 484
BstDEI	CTNAG	3 cut(s)	18, 251, 973
BstF5I	GGATG	4 cut(s)	232, 349, 942, 1005
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	5 cut(s)	504, 523, 663, 1103, 1171
BstMBI	GATC	5 cut(s)	501, 520, 660, 1100, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	736, 899
BstNI	CCWGG	3 cut(s)	328, 534, 933
BstNSI	RCATGY	3 cut(s)	407, 788, 831
BstSCI	CCNGG	4 cut(s)	161, 326, 532, 931
BstSFI	CTRYAG	2 cut(s)	60, 888
BstV1I	GCAGC	2 cut(s)	9, 400
BstX2I	RGATCY	2 cut(s)	501, 1100
BstYI	RGATCY	2 cut(s)	501, 1100
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	4 cut(s)	232, 349, 942, 1005
BtsIMutI	CAGTG	4 cut(s)	41, 393, 994, 1015
Cac8I	GCNNGC	2 cut(s)	376, 484
CaiI	CAGNNNCTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	2 cut(s)	188, 374
Cfr13I	GGNCC	2 cut(s)	7, 530
CpoI	CGGWCCG	1 cut(s)	7
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	4 cut(s)	147, 431, 985, 1156
CspI	CGGWCCG	1 cut(s)	7
CviQI	GTAC	4 cut(s)	147, 431, 985, 1156
DdeI	CTNAG	3 cut(s)	18, 251, 973
DpnI	GATC	5 cut(s)	503, 522, 662, 1102, 1170
DpnII	GATC	5 cut(s)	501, 520, 660, 1100, 1168
DrdI	GACNNNNNNGTC	1 cut(s)	631
DriI	GACNNNNNGTC	1 cut(s)	927
DseDI	GACNNNNNNGTC	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	1134
Eam1105I	GACNNNNNGTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	1134
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	1159
Eco47I	GGWCC	2 cut(s)	7, 530
Eco57I	CTGAAG	2 cut(s)	287, 1046
EcoRII	CCWGG	3 cut(s)	326, 532, 931
EcoT14I	CCWWGG	1 cut(s)	1159
EcoT22I	ATGCAT	2 cut(s)	315, 790
ErhI	CCWWGG	1 cut(s)	1159
FalI	AAGNNNNNCTT	2 cut(s)	1136, 1168
FaqI	GGGAC	5 cut(s)	116, 178, 365, 455, 934
FauI	CCCGC	1 cut(s)	1180
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	4 cut(s)	23, 81, 84, 414
FokI	GGATG	4 cut(s)	239, 336, 949, 1012
Fsp4HI	GCNGC	4 cut(s)	23, 81, 84, 414
FspAI	RTGCGCAY	1 cut(s)	402
FspBI	CTAG	3 cut(s)	87, 483, 1208
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	4 cut(s)	23, 81, 84, 414
HapII	CCGG	4 cut(s)	115, 162, 189, 375
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	2 cut(s)	1205, 1231
HindII	GTYRAC	2 cut(s)	1205, 1231
HinfI	GANTC	3 cut(s)	104, 322, 1327
HpaII	CCGG	4 cut(s)	115, 162, 189, 375
HphI	GGTGA	3 cut(s)	557, 698, 1282
Hpy166II	GTNNAC	2 cut(s)	1205, 1231
Hpy188I	TCNGA	5 cut(s)	127, 246, 520, 655, 1026
Hpy188III	TCNNGA	2 cut(s)	362, 622
Hpy8I	GTNNAC	2 cut(s)	1205, 1231
HpyAV	CCTTC	7 cut(s)	124, 132, 137, 262, 442, 466, 845
HpyCH4III	ACNGT	5 cut(s)	572, 929, 989, 1010, 1060
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	8 cut(s)	110, 313, 428, 752, 788, 902, 1114, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	736, 899
HpyF3I	CTNAG	3 cut(s)	18, 251, 973
HpySE526I	ACGT	1 cut(s)	882
Hsp92I	GRCGYC	1 cut(s)	378
HspAI	GCGC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	501, 520, 660, 1100, 1168
LmnI	GCTCC	2 cut(s)	795, 840
Lsp1109I	GCAGC	2 cut(s)	9, 400
LweI	GCATC	6 cut(s)	226, 345, 797, 902, 1101, 1231
MaeI	CTAG	3 cut(s)	87, 483, 1208
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	5 cut(s)	233, 406, 566, 866, 883
MalI	GATC	5 cut(s)	503, 522, 662, 1102, 1170
MboI	GATC	5 cut(s)	501, 520, 660, 1100, 1168
MboII	GAAGA	6 cut(s)	496, 787, 790, 1039, 1151, 1246
MfeI	CAATTG	1 cut(s)	1265
MflI	RGATCY	2 cut(s)	501, 1100
MluCI	AATT	7 cut(s)	208, 594, 665, 710, 717, 1078, 1265
MlyI	GAGTC	1 cut(s)	98
Mph1103I	ATGCAT	2 cut(s)	315, 790
MroNI	GCCGGC	1 cut(s)	374
MseI	TTAA	6 cut(s)	593, 693, 765, 873, 1040, 1083
MslI	CAYNNNNRTG	3 cut(s)	284, 308, 881
MspI	CCGG	4 cut(s)	115, 162, 189, 375
MspR9I	CCNGG	4 cut(s)	163, 328, 534, 933
MunI	CAATTG	1 cut(s)	1265
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	3 cut(s)	328, 534, 933
MwoI	GCNNNNNNNGC	2 cut(s)	736, 899
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	5 cut(s)	501, 520, 660, 1100, 1168
NgoMIV	GCCGGC	1 cut(s)	374
NheI	GCTAGC	1 cut(s)	482
NmuCI	GTSAC	3 cut(s)	233, 866, 883
NsbI	TGCGCA	1 cut(s)	402
NsiI	ATGCAT	2 cut(s)	315, 790
NspI	RCATGY	3 cut(s)	407, 788, 831
NspV	TTCGAA	1 cut(s)	1076
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	1 cut(s)	732
PdiI	GCCGGC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	322, 1327
PflMI	CCANNNNNTGG	1 cut(s)	1199
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	24, 82, 85, 415
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	883
PshBI	ATTAAT	1 cut(s)	593
Psp6I	CCWGG	3 cut(s)	326, 532, 931
PspGI	CCWGG	3 cut(s)	326, 532, 931
PspPI	GGNCC	2 cut(s)	7, 530
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	501, 1100
RsaI	GTAC	4 cut(s)	148, 432, 986, 1157
RsaNI	GTAC	4 cut(s)	147, 431, 985, 1156
RseI	CAYNNNNRTG	3 cut(s)	284, 308, 881
Rsr2I	CGGWCCG	1 cut(s)	7
RsrII	CGGWCCG	1 cut(s)	7
SaqAI	TTAA	6 cut(s)	593, 693, 765, 873, 1040, 1083
SatI	GCNGC	4 cut(s)	23, 81, 84, 414
Sau3AI	GATC	5 cut(s)	501, 520, 660, 1100, 1168
Sau96I	GGNCC	2 cut(s)	7, 530
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	4 cut(s)	163, 328, 534, 933
SfaNI	GCATC	6 cut(s)	226, 345, 797, 902, 1101, 1231
SfcI	CTRYAG	2 cut(s)	60, 888
SfuI	TTCGAA	1 cut(s)	1076
SinI	GGWCC	2 cut(s)	7, 530
SmiMI	CAYNNNNRTG	3 cut(s)	284, 308, 881
Sse9I	AATT	7 cut(s)	208, 594, 665, 710, 717, 1078, 1265
SsiI	CCGC	6 cut(s)	5, 81, 84, 176, 224, 1173
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	3 cut(s)	87, 483, 1208
StyD4I	CCNGG	4 cut(s)	161, 326, 532, 931
StyI	CCWWGG	1 cut(s)	1159
TaaI	ACNGT	5 cut(s)	572, 929, 989, 1010, 1060
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	3 cut(s)	76, 93, 1076
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	7 cut(s)	208, 594, 665, 710, 717, 1078, 1265
TatI	WGTACW	2 cut(s)	430, 984
TauI	GCSGC	2 cut(s)	83, 86
TfiI	GAWTC	2 cut(s)	322, 1327
Tru1I	TTAA	6 cut(s)	593, 693, 765, 873, 1040, 1083
Tru9I	TTAA	6 cut(s)	593, 693, 765, 873, 1040, 1083
TscAI	CASTG	4 cut(s)	48, 400, 994, 1015
TseFI	GTSAC	3 cut(s)	233, 866, 883
TseI	GCWGC	2 cut(s)	22, 413
Tsp45I	GTSAC	3 cut(s)	233, 866, 883
TspDTI	ATGAA	5 cut(s)	280, 335, 751, 953, 1246
TspGWI	ACGGA	1 cut(s)	1084
TspRI	CASTG	4 cut(s)	48, 400, 994, 1015
Van91I	CCANNNNNTGG	1 cut(s)	1199
VpaK11BI	GGWCC	2 cut(s)	7, 530
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	2 cut(s)	665, 1078
XceI	RCATGY	3 cut(s)	407, 788, 831
XspI	CTAG	3 cut(s)	87, 483, 1208
ZrmI	AGTACT	1 cut(s)	432
Zsp2I	ATGCAT	2 cut(s)	315, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.