Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013998

Physical Location & Seq

Genomic Coordinates Forward (+)

23866053 .. 23867711

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGAGTTCACGAGGAAAATTCAAACGAGATTGAATACCCAGAAGCTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGCGACCCATATTTCGCGACGCAACTTGCCAGATTCTATGCGTTAAACGATGATCTTATATCTGCTCGCAAACTGTTCGACGTATTTCCTGAGAGAAGTGTTTTCCTTTGGAACTCTATTATTCGAGCTTATGCTAAAGCTCATCAATTTACTACTGTTTTGTCACTCTTCTCTCAAATACTGCGTTCTGATACAAGACCTGATAACTTCACCTATGCGTGCTTAGCTCGTGGCTTTTCAGAGAGTTTTGATACAAAGGGACTGAGATGTATTCATGGGATTGCAATTGTGTCTGGTCTTGGTTTTGATCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGACTTATCGTTGAAGCAAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTTTGGAATGTTATGATTCTTGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCAACATCGAGGACACCAACCTAATTGTTATACAATGGTAGCCCTAACAAGTGGTTTGATTGATCCTAGTTTGTTACTCGTTGCTTGGTCTGTTCATGCATTTTGCTTGAAAATCAATTTAGATTCTCATTCTTATGTTGGTTGTGCTTTAGTGAACATGTACTCGAGATGCATGTGCATTGCTTCTGCTTGTAGTGTGTTTAATAGCATCTCTGAGCCTGATTTAGTTGCGTGTTCTTCTTTGATAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATCTGTTTGCTGAGCTGAGAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTATTGGGGTCTTGTGCTGAGTTATCGGATTCAGTCTCCGGAAAAGAAGTGCACAGTTATGTTATTCGACTAGGACTAGAACTTGATATAAAGGTTTGCTCTGCTCTTATAGACATGTACTCAAAATGTGGGCTTCTAAAATGCGCGATGAGTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCCCTTATTTTGGGTCTTGGCTTGCACGGTTTTGCTTCCACTGCGTTTGAAAAGTTCACTGAGATCCTTGAGATGGGATTGATACCGGACGAGATCACTTTCTCTGCTCTTCTTTGTACTTGTTGCCATTCAGGTCTTTTAAACAAAGGTCAAGAGATCTTTGAGAGGATGAAGAGTGAGTTTGGTATTGAGCCGCAAACAGAGCATTATGTTTACATGGTTAAGCTAATGGGAATGGCAGGAAAACTAGAAGAAGCATTTGAGTTTGTAATGTCATTACAAAAACCAATTGATTCAGGAATTTTGGGAGCACTATTGTCATGTTGCGAAGTTCATGAGAACACTCATTTGGCTGAAGTTGTAGCAGAGAATATACACAAGAATGGAGAAGAGAGAAGAAGTGTTTACAAAGTGATGCTCTCTAATGTGTATGCAAGATATGGGAGATGGGATGAAGTAGAAAGGCTTAGAGATGGAATATCAGAAAGCTATGGAGGGAAATTGCCAGGCATTAGTTGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

552

Amino Acids

61.4

Weight (kDa)

6.94

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 117	2.1e-08	PPR repeat family
PPR_2	PF13041	170 - 217	1.7e-07	PPR repeat family
PPR_2	PF13041	271 - 309	4.1e-06	PPR repeat family
PPR_2	PF13041	372 - 421	8.5e-07	PPR repeat family
E_motif	PF20431	490 - 551	4.2e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64310
fragaria_vesca	FvH4_5g21730
malus_domestica	MD06G1168400.v1.1 MD06G1168500.v1.1 MD06G1168800.v1.1 MD06G1168900.v1.1
pyrus_communis	pycom06g15010 pycom06g15040
rosa_chinensis	RchiOBHm_Chr7g0192851
rosa_laevigata	RLG00000004320
rosa_roxburghii	Rroxscaffold_3G00262620
rosa_rugosa	Rorug07G0005100
rosa_samantha	Rh7AG130700 Rh7BG131600 Rh7CG134900 Rh7DG132700
rosa_wichuraiana	Rw7G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	110, 112, 114, 128, 1085
AccIII	TCCGGA	1 cut(s)	977
AciI	CCGC	2 cut(s)	858, 1328
AclWI	GGATC	3 cut(s)	500, 650, 1192
AcsI	RAATTY	4 cut(s)	51, 423, 1104, 1434
AcuI	CTGAAG	1 cut(s)	1509
AfaI	GTAC	3 cut(s)	755, 1058, 1252
AfiI	CCNNNNNNNGG	2 cut(s)	1144, 1207
AflIII	ACRYGT	2 cut(s)	750, 1053
AgsI	TTSAA	8 cut(s)	56, 67, 456, 476, 498, 703, 1132, 1184
AjnI	CCWGG	1 cut(s)	1639
AjuI	GAANNNNNNNTTGG	2 cut(s)	1466, 1498
Alw21I	GWGCWC	2 cut(s)	993, 1447
Alw26I	GTCTC	1 cut(s)	979
Alw44I	GTGCAC	1 cut(s)	989
AlwI	GGATC	3 cut(s)	500, 650, 1192
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	757
Aor13HI	TCCGGA	1 cut(s)	977
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	989
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	4 cut(s)	51, 423, 1104, 1434
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	3 cut(s)	112, 114, 1085
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	757
BaeGI	GKGCMC	1 cut(s)	993
BauI	CACGAG	2 cut(s)	43, 339
Bbv12I	GWGCWC	2 cut(s)	993, 1447
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	3 cut(s)	1201, 1575, 1601
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	1641
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	979
BfaI	CTAG	4 cut(s)	660, 1010, 1016, 1382
BglII	AGATCT	2 cut(s)	511, 1290
BisI	GCNGC	2 cut(s)	80, 1328
BlpI	GCTNAGC	2 cut(s)	334, 891
BlsI	GCNGC	2 cut(s)	81, 1329
Bme1390I	CCNGG	1 cut(s)	1641
BmeT110I	CYCGRG	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	1641
BmsI	GCATC	7 cut(s)	539, 582, 752, 810, 845, 889, 1539
Bpu1102I	GCTNAGC	2 cut(s)	334, 891
BpuEI	CTTGAG	1 cut(s)	1223
BsaBI	GATNNNNATC	1 cut(s)	510
BsaWI	WCCGGW	2 cut(s)	977, 1219
Bsc4I	CCNNNNNNNGG	2 cut(s)	1144, 1207
Bse1I	ACTGG	1 cut(s)	847
Bse3DI	GCAATG	1 cut(s)	771
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	977
BseBI	CCWGG	1 cut(s)	1641
BseGI	GGATG	3 cut(s)	554, 1308, 1591
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	1144, 1207
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	7 cut(s)	192, 365, 798, 882, 887, 948, 1185
BseNI	ACTGG	1 cut(s)	847
BsePI	GCGCGC	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	993
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	5 cut(s)	110, 112, 114, 128, 1085
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	993, 1447
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	978, 1220
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	1144, 1207
BsmAI	GTCTC	1 cut(s)	979
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	757
Bsp1286I	GDGCHC	2 cut(s)	993, 1447
Bsp13I	TCCGGA	1 cut(s)	977
Bsp143I	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
Bsp1720I	GCTNAGC	2 cut(s)	334, 891
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	2 cut(s)	858, 1328
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	7 cut(s)	193, 366, 799, 883, 888, 949, 1186
BspEI	TCCGGA	1 cut(s)	977
BspFNI	CGCG	5 cut(s)	110, 112, 114, 128, 1085
BspHI	TCATGA	1 cut(s)	1468
BspPI	GGATC	3 cut(s)	500, 650, 1192
BspQI	GCTCTTC	1 cut(s)	1248
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	1 cut(s)	847
BssHII	GCGCGC	1 cut(s)	110
BssMI	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
BssSI	CACGAG	2 cut(s)	43, 339
Bst2BI	CACGAG	2 cut(s)	43, 339
Bst2UI	CCWGG	1 cut(s)	1641
Bst4CI	ACNGT	4 cut(s)	186, 268, 995, 1163
Bst6I	CTCTTC	4 cut(s)	284, 1248, 1301, 1518
BstC8I	GCNNGC	4 cut(s)	112, 178, 331, 1157
BstDEI	CTNAG	9 cut(s)	201, 334, 374, 807, 891, 896, 957, 1194, 1601
BstF5I	GGATG	3 cut(s)	554, 1308, 1591
BstFNI	CGCG	5 cut(s)	110, 112, 114, 128, 1085
BstHHI	GCGC	3 cut(s)	112, 114, 1085
BstKTI	GATC	8 cut(s)	166, 421, 508, 514, 658, 1200, 1230, 1293
BstMAI	GTCTC	1 cut(s)	979
BstMBI	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 1175, 1336
BstNI	CCWGG	1 cut(s)	1641
BstNSI	RCATGY	3 cut(s)	754, 769, 1057
BstSCI	CCNGG	1 cut(s)	1639
BstSLI	GKGCMC	1 cut(s)	993
BstUI	CGCG	5 cut(s)	110, 112, 114, 128, 1085
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	4 cut(s)	505, 511, 1197, 1290
BstYI	RGATCY	4 cut(s)	505, 511, 1197, 1290
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	1100
BtsCI	GGATG	3 cut(s)	554, 1308, 1591
BtsI	GCAGTG	2 cut(s)	439, 1173
BtsIMutI	CAGTG	3 cut(s)	439, 1173, 1191
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	112, 178, 331, 1157
CaiI	CAGNNNCTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	1468
CfoI	GCGC	3 cut(s)	112, 114, 1085
CseI	GACGC	2 cut(s)	22, 139
Csp6I	GTAC	3 cut(s)	754, 1057, 1251
CspCI	CAANNNNNGTGG	2 cut(s)	1162, 1197
CviAII	CATG	8 cut(s)	386, 689, 751, 766, 1054, 1351, 1455, 1469
CviQI	GTAC	3 cut(s)	754, 1057, 1251
DdeI	CTNAG	9 cut(s)	201, 334, 374, 807, 891, 896, 957, 1194, 1601
DpnI	GATC	8 cut(s)	165, 420, 507, 513, 657, 1199, 1229, 1292
DpnII	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
DraI	TTTAAA	1 cut(s)	1275
Eam1104I	CTCTTC	4 cut(s)	284, 1248, 1301, 1518
EarI	CTCTTC	4 cut(s)	284, 1248, 1301, 1518
Eco57I	CTGAAG	1 cut(s)	1509
Eco88I	CYCGRG	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	1104
EcoRII	CCWGG	1 cut(s)	1639
EcoT22I	ATGCAT	2 cut(s)	694, 767
FaeI	CATG	8 cut(s)	389, 692, 754, 769, 1057, 1354, 1458, 1472
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	8 cut(s)	385, 688, 750, 765, 1053, 1350, 1454, 1468
FauI	CCCGC	1 cut(s)	851
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	80, 1328
FokI	GGATG	3 cut(s)	561, 1315, 1598
Fsp4HI	GCNGC	2 cut(s)	80, 1328
FspBI	CTAG	4 cut(s)	660, 1010, 1016, 1382
GlaI	GCGC	3 cut(s)	111, 113, 1084
GluI	GCNGC	2 cut(s)	80, 1328
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	978, 1220
HgaI	GACGC	2 cut(s)	22, 139
HhaI	GCGC	3 cut(s)	112, 114, 1085
Hin1II	CATG	8 cut(s)	389, 692, 754, 769, 1057, 1354, 1458, 1472
Hin6I	GCGC	3 cut(s)	110, 112, 1083
HinP1I	GCGC	3 cut(s)	110, 112, 1083
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	8 cut(s)	144, 535, 573, 716, 862, 968, 1090, 1427
HpaII	CCGG	2 cut(s)	978, 1220
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	6 cut(s)	42, 748, 991, 1191, 1348, 1540
Hpy188I	TCNGA	5 cut(s)	301, 352, 808, 967, 1618
Hpy8I	GTNNAC	6 cut(s)	42, 748, 991, 1191, 1348, 1540
Hpy99I	CGWCG	2 cut(s)	133, 194
HpyCH4III	ACNGT	4 cut(s)	186, 268, 995, 1163
HpyCH4IV	ACGT	2 cut(s)	22, 192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 1175, 1336
HpyF3I	CTNAG	9 cut(s)	201, 334, 374, 807, 891, 896, 957, 1194, 1601
HpySE526I	ACGT	2 cut(s)	22, 192
Hsp92II	CATG	8 cut(s)	389, 692, 754, 769, 1057, 1354, 1458, 1472
HspAI	GCGC	3 cut(s)	110, 112, 1083
Kpn2I	TCCGGA	1 cut(s)	977
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
LguI	GCTCTTC	1 cut(s)	1248
LmnI	GCTCC	1 cut(s)	1442
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	7 cut(s)	539, 582, 752, 810, 845, 889, 1539
MaeI	CTAG	4 cut(s)	660, 1010, 1016, 1382
MaeII	ACGT	2 cut(s)	22, 192
MaeIII	GTNAC	4 cut(s)	18, 91, 273, 666
MalI	GATC	8 cut(s)	165, 420, 507, 513, 657, 1199, 1229, 1292
MauBI	CGCGCGCG	1 cut(s)	110
MboI	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
MboII	GAAGA	7 cut(s)	271, 822, 1235, 1318, 1397, 1535, 1542
MfeI	CAATTG	3 cut(s)	396, 438, 1422
MflI	RGATCY	4 cut(s)	505, 511, 1197, 1290
MhlI	GDGCHC	2 cut(s)	993, 1447
MlyI	GAGTC	1 cut(s)	1099
MnlI	CCTC	6 cut(s)	16, 39, 596, 865, 1293, 1622
Mph1103I	ATGCAT	2 cut(s)	694, 767
MroI	TCCGGA	1 cut(s)	977
MseI	TTAA	7 cut(s)	155, 444, 585, 795, 1274, 1356, 1657
MslI	CAYNNNNRTG	3 cut(s)	726, 996, 1515
MspI	CCGG	2 cut(s)	978, 1220
MspR9I	CCNGG	1 cut(s)	1641
MunI	CAATTG	3 cut(s)	396, 438, 1422
MvaI	CCWGG	1 cut(s)	1641
MvnI	CGCG	5 cut(s)	110, 112, 114, 128, 1085
MwoI	GCNNNNNNNGC	3 cut(s)	335, 1175, 1336
NdeII	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
NlaIII	CATG	8 cut(s)	389, 692, 754, 769, 1057, 1354, 1458, 1472
NmuCI	GTSAC	1 cut(s)	273
NruI	TCGCGA	1 cut(s)	128
NsiI	ATGCAT	2 cut(s)	694, 767
NspI	RCATGY	3 cut(s)	754, 769, 1057
PaeR7I	CTCGAG	1 cut(s)	757
PagI	TCATGA	1 cut(s)	1468
PauI	GCGCGC	1 cut(s)	110
PciI	ACATGT	2 cut(s)	750, 1053
PciSI	GCTCTTC	1 cut(s)	1248
PfeI	GAWTC	7 cut(s)	144, 535, 573, 716, 862, 968, 1427
PkrI	GCNGC	2 cut(s)	81, 1329
PleI	GAGTC	1 cut(s)	1098
PpsI	GAGTC	1 cut(s)	1098
PscI	ACATGT	2 cut(s)	750, 1053
Psp6I	CCWGG	1 cut(s)	1639
PspGI	CCWGG	1 cut(s)	1639
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	4 cut(s)	505, 511, 1197, 1290
PteI	GCGCGC	1 cut(s)	110
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	3 cut(s)	755, 1058, 1252
RsaNI	GTAC	3 cut(s)	754, 1057, 1251
RseI	CAYNNNNRTG	3 cut(s)	726, 996, 1515
SapI	GCTCTTC	1 cut(s)	1248
SaqAI	TTAA	7 cut(s)	155, 444, 585, 795, 1274, 1356, 1657
SatI	GCNGC	2 cut(s)	80, 1328
Sau3AI	GATC	8 cut(s)	163, 418, 505, 511, 655, 1197, 1227, 1290
SchI	GAGTC	1 cut(s)	1099
ScrFI	CCNGG	1 cut(s)	1641
SduI	GDGCHC	2 cut(s)	993, 1447
SfaNI	GCATC	7 cut(s)	539, 582, 752, 810, 845, 889, 1539
Sfr274I	CTCGAG	1 cut(s)	757
SlaI	CTCGAG	1 cut(s)	757
SmiMI	CAYNNNNRTG	3 cut(s)	726, 996, 1515
SmlI	CTYRAG	2 cut(s)	757, 1202
SmoI	CTYRAG	2 cut(s)	757, 1202
SsiI	CCGC	2 cut(s)	858, 1328
SspMI	CTAG	4 cut(s)	660, 1010, 1016, 1382
StyD4I	CCNGG	1 cut(s)	1639
TaaI	ACNGT	4 cut(s)	186, 268, 995, 1163
TaiI	ACGT	2 cut(s)	25, 195
TaqI	TCGA	6 cut(s)	189, 235, 601, 758, 851, 1006
TatI	WGTACW	3 cut(s)	753, 1056, 1250
TauI	GCSGC	1 cut(s)	1330
TfiI	GAWTC	7 cut(s)	144, 535, 573, 716, 862, 968, 1427
Tru1I	TTAA	7 cut(s)	155, 444, 585, 795, 1274, 1356, 1657
Tru9I	TTAA	7 cut(s)	155, 444, 585, 795, 1274, 1356, 1657
TscAI	CASTG	3 cut(s)	439, 1180, 1198
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	5 cut(s)	374, 677, 1319, 1457, 1602
TspRI	CASTG	3 cut(s)	439, 1180, 1198
VneI	GTGCAC	1 cut(s)	989
XapI	RAATTY	4 cut(s)	51, 423, 1104, 1434
XceI	RCATGY	3 cut(s)	754, 769, 1057
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1647
XhoI	CTCGAG	1 cut(s)	757
XspI	CTAG	4 cut(s)	660, 1010, 1016, 1382
Zsp2I	ATGCAT	2 cut(s)	694, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.