Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013998

Physical Location & Seq

Genomic Coordinates Forward (+)

30886800 .. 30888069

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1168800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCGTAGAACTGAAATCAAACCGGATAACTTCACTCATGCTTGCATTGTACGTGCCTGCGCTGATAGTTTTGATTTGGATGGACTGAAGCTTGTGCATTGTGGAGTAATGGTTGCAGGACTCAGCCTTGTTGATGAAGCAATCAGGGTGTTTAATGGGATTCGACAGCCGGATTTGGTTTTATGGAATTCGATGATTTCGGGTTATGGAAGTGGCGGGTTTTGGGATACAGGTTTGCAGCTGTTTAGTGAGATGAGAAGCATGGAGCTGGTGCCGGATGGATACACAATTGTTGGGTTGCTTTCGGGTTTAGCGGATTCGAGCTTGATAAGTATTGGAGAGGGAATACATGGTCTTTGTTTGAAATGGAATTTAGATTCTAATGCTCATGTGAGCAATGTACTTGTGAGCATGTATTCGAGATGTATGTCTATGAATTCTTCACATAGAGATTTTAGTGGTTTGTTCGAGCCAGATTTAGTAACACGGTCTGCTTTGATCACTGGGTTTTCGCAGTCGGGAGATTATGACAAGGCATTGTTCTTTTTCAAGAATTTGAACATGGAAGGTAAGAAGCCGAATTCGGTTTTGATTGCCAGTATGTTGGCTGCTGCTTCTCAGATGGCGCATGTAGGGCCTGCCATGTATTCAAAGTGCGGCTTCTTGGGGATGGGTACTCGTGTTTTTGAGATCATGCCAGAGAAGAATATTGTTTCGTACAATTCTTTAATATTGGGTCTTGGTTTGCATGGACTTGCCTCCGAGGCCTTTAGAATGTTTGATGAGATACTCAGAAACGGATTGAAACCTGATGAGTCTACATTTTCTGCTCTCCCTTGTGCATGCTGCCATGCTGGCCTTGTCGAAGATGGCCGGGAAATTTTCAGAAGAATGAAAGATGAGTTTTGCATTCAAGCTAGAACGGAGCATTATGTTCATATGGTGAAACTTCTTGGGATGGAAGGAAGATTGGAAGAGGCTTACTATCTAATTTTGTCCTTGCCTGAGCCAGTGGACAGCGGCATATGGGGAGCCCTTTTATTGTGCTGTGATGTATGTGGGAAATTTGGAGCTGGCAGAAATTGTAGCCCGAAGGCTCTCTTTGAAAGTAATTTGGAGAAAAGTGCTTACAGAGTCATGCTTTCAAATATATATGGTGGGATGATGCAAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

393

Amino Acids

43.12

Weight (kDa)

5.83

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	57 - 105	8.8e-09	PPR repeat family
PPR	PF01535	60 - 88	6.6e-07	PPR repeat
PPR_2	PF13041	235 - 284	5.5e-11	PPR repeat family
PPR	PF01535	238 - 268	5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64310
fragaria_vesca	FvH4_5g21730
malus_domestica	MD06G1168400.v1.1 MD06G1168500.v1.1 MD06G1168800.v1.1 MD06G1168900.v1.1
pyrus_communis	pycom06g15010 pycom06g15040
rosa_chinensis	RchiOBHm_Chr7g0192851
rosa_laevigata	RLG00000004320
rosa_roxburghii	Rroxscaffold_3G00262620
rosa_rugosa	Rorug07G0005100
rosa_samantha	Rh7AG130700 Rh7BG131600 Rh7CG134900 Rh7DG132700
rosa_wichuraiana	Rw7G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	818
AciI	CCGC	4 cut(s)	216, 314, 657, 1020
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	7 cut(s)	187, 370, 436, 553, 580, 879, 1064
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	4 cut(s)	51, 402, 676, 719
AgsI	TTSAA	8 cut(s)	364, 550, 559, 651, 805, 914, 1106, 1146
AluBI	AGCT	6 cut(s)	91, 241, 268, 324, 917, 1073
AluI	AGCT	6 cut(s)	91, 241, 268, 324, 917, 1073
AoxI	GGCC	4 cut(s)	635, 765, 856, 871
ApeKI	GCWGC	4 cut(s)	238, 608, 611, 846
ApoI	RAATTY	7 cut(s)	187, 370, 436, 553, 580, 879, 1064
AspLEI	GCGC	2 cut(s)	62, 628
AspS9I	GGNCC	1 cut(s)	635
AsuC2I	CCSGG	1 cut(s)	875
AsuHPI	GGTGA	1 cut(s)	955
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	1036
BauI	CACGAG	1 cut(s)	678
BbvI	GCAGC	4 cut(s)	250, 595, 598, 833
BccI	CCATC	6 cut(s)	74, 272, 616, 664, 863, 952
BciVI	GTATCC	2 cut(s)	220, 275
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	875
BfaI	CTAG	1 cut(s)	918
BfuI	GTATCC	2 cut(s)	220, 275
BglI	GCCNNNNNGGC	2 cut(s)	764, 855
BisI	GCNGC	6 cut(s)	239, 609, 612, 658, 847, 1021
BlsI	GCNGC	6 cut(s)	240, 610, 613, 659, 848, 1022
Bme1390I	CCNGG	1 cut(s)	875
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	2 cut(s)	273, 1033
BmrFI	CCNGG	1 cut(s)	875
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	1155
BmuI	ACTGGG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuMI	CCSGG	1 cut(s)	875
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	762
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bse1I	ACTGG	3 cut(s)	508, 597, 1010
Bse3DI	GCAATG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	5 cut(s)	85, 283, 675, 963, 1167
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	4 cut(s)	136, 632, 805, 996
BseNI	ACTGG	3 cut(s)	508, 597, 1010
BseXI	GCAGC	4 cut(s)	250, 595, 598, 833
BshFI	GGCC	4 cut(s)	637, 767, 858, 873
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	4 cut(s)	23, 170, 275, 874
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	4 cut(s)	637, 767, 858, 873
Bsp1286I	GDGCHC	1 cut(s)	1036
Bsp143I	GATC	2 cut(s)	498, 690
BspACI	CCGC	4 cut(s)	216, 314, 657, 1020
BspANI	GGCC	4 cut(s)	637, 767, 858, 873
BspCNI	CTCAG	4 cut(s)	135, 631, 804, 997
BspLI	GGNNCC	2 cut(s)	273, 1033
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	3 cut(s)	508, 597, 1010
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	2 cut(s)	498, 690
BssSI	CACGAG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	969
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	6 cut(s)	43, 58, 639, 844, 856, 1075
BstDEI	CTNAG	4 cut(s)	122, 618, 791, 1005
BstF5I	GGATG	5 cut(s)	85, 283, 675, 963, 1167
BstHHI	GCGC	2 cut(s)	62, 628
BstKTI	GATC	2 cut(s)	501, 693
BstMBI	GATC	2 cut(s)	498, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	634, 764, 855
BstNSI	RCATGY	3 cut(s)	415, 632, 846
BstSCI	CCNGG	1 cut(s)	873
BstV1I	GCAGC	4 cut(s)	250, 595, 598, 833
BstXI	CCANNNNNNTGG	1 cut(s)	604
BsuI	GTATCC	2 cut(s)	220, 275
BsuRI	GGCC	4 cut(s)	637, 767, 858, 873
BtsCI	GGATG	5 cut(s)	85, 283, 675, 963, 1167
BtsIMutI	CAGTG	2 cut(s)	501, 1017
Cac8I	GCNNGC	6 cut(s)	43, 58, 639, 844, 856, 1075
CfoI	GCGC	2 cut(s)	62, 628
Cfr13I	GGNCC	1 cut(s)	635
Csp6I	GTAC	4 cut(s)	50, 401, 675, 718
CviQI	GTAC	4 cut(s)	50, 401, 675, 718
DdeI	CTNAG	4 cut(s)	122, 618, 791, 1005
DpnI	GATC	2 cut(s)	500, 692
DpnII	GATC	2 cut(s)	498, 690
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Eco147I	AGGCCT	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	1036
Eco57I	CTGAAG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRI	GAATTC	3 cut(s)	187, 436, 580
EcoT38I	GRGCYC	1 cut(s)	1036
FalI	AAGNNNNNCTT	4 cut(s)	644, 676, 1085, 1117
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	2 cut(s)	939, 1025
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	818
Fnu4HI	GCNGC	6 cut(s)	239, 609, 612, 658, 847, 1021
FokI	GGATG	5 cut(s)	92, 290, 682, 970, 1174
FriOI	GRGCYC	1 cut(s)	1036
Fsp4HI	GCNGC	6 cut(s)	239, 609, 612, 658, 847, 1021
FspBI	CTAG	1 cut(s)	918
GlaI	GCGC	2 cut(s)	61, 627
GluI	GCNGC	6 cut(s)	239, 609, 612, 658, 847, 1021
HaeIII	GGCC	4 cut(s)	637, 767, 858, 873
HapII	CCGG	4 cut(s)	23, 170, 275, 874
HhaI	GCGC	2 cut(s)	62, 628
Hin6I	GCGC	2 cut(s)	60, 626
HinP1I	GCGC	2 cut(s)	60, 626
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	6 cut(s)	120, 160, 317, 377, 815, 1134
HpaII	CCGG	4 cut(s)	23, 170, 275, 874
HphI	GGTGA	1 cut(s)	955
Hpy166II	GTNNAC	2 cut(s)	819, 1015
Hpy188I	TCNGA	4 cut(s)	621, 763, 794, 887
Hpy188III	TCNNGA	3 cut(s)	420, 519, 550
Hpy8I	GTNNAC	2 cut(s)	819, 1015
HpyAV	CCTTC	3 cut(s)	560, 956, 1087
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	8 cut(s)	45, 97, 116, 238, 748, 842, 909, 1168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	634, 764, 855
HpyF3I	CTNAG	4 cut(s)	122, 618, 791, 1005
HpySE526I	ACGT	1 cut(s)	52
HspAI	GCGC	2 cut(s)	60, 626
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	498, 690
LmnI	GCTCC	4 cut(s)	265, 925, 1031, 1070
Lsp1109I	GCAGC	4 cut(s)	250, 595, 598, 833
LweI	GCATC	1 cut(s)	1155
MaeI	CTAG	1 cut(s)	918
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	500, 692
MboI	GATC	2 cut(s)	498, 690
MboII	GAAGA	6 cut(s)	432, 715, 878, 900, 978, 986
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	1036
MlyI	GAGTC	3 cut(s)	114, 824, 1143
MnlI	CCTC	4 cut(s)	334, 757, 769, 970
MseI	TTAA	2 cut(s)	153, 728
MspA1I	CMGCKG	2 cut(s)	241, 1020
MspI	CCGG	4 cut(s)	23, 170, 275, 874
MspR9I	CCNGG	1 cut(s)	875
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	909
MwoI	GCNNNNNNNGC	3 cut(s)	634, 764, 855
NciI	CCSGG	1 cut(s)	875
NdeI	CATATG	2 cut(s)	939, 1025
NdeII	GATC	2 cut(s)	498, 690
NlaIV	GGNNCC	2 cut(s)	273, 1033
NspI	RCATGY	3 cut(s)	415, 632, 846
PaeI	GCATGC	1 cut(s)	846
PceI	AGGCCT	1 cut(s)	767
PctI	GAATGC	1 cut(s)	909
PfeI	GAWTC	3 cut(s)	160, 317, 377
PkrI	GCNGC	6 cut(s)	240, 610, 613, 659, 848, 1022
PleI	GAGTC	3 cut(s)	114, 823, 1142
PpsI	GAGTC	3 cut(s)	114, 823, 1142
Ppu21I	YACGTR	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	273, 1033
PspPI	GGNCC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	4 cut(s)	51, 402, 676, 719
RsaNI	GTAC	4 cut(s)	50, 401, 675, 718
SaqAI	TTAA	2 cut(s)	153, 728
SatI	GCNGC	6 cut(s)	239, 609, 612, 658, 847, 1021
Sau3AI	GATC	2 cut(s)	498, 690
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	3 cut(s)	114, 824, 1143
ScrFI	CCNGG	1 cut(s)	875
SduI	GDGCHC	1 cut(s)	1036
SfaNI	GCATC	1 cut(s)	1155
SphI	GCATGC	1 cut(s)	846
SseBI	AGGCCT	1 cut(s)	767
SsiI	CCGC	4 cut(s)	216, 314, 657, 1020
SspI	AATATT	2 cut(s)	709, 732
SspMI	CTAG	1 cut(s)	918
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	873
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	6 cut(s)	163, 191, 320, 419, 468, 864
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	2 cut(s)	660, 1023
TfiI	GAWTC	3 cut(s)	160, 317, 377
Tru1I	TTAA	2 cut(s)	153, 728
Tru9I	TTAA	2 cut(s)	153, 728
TscAI	CASTG	2 cut(s)	508, 1017
TseI	GCWGC	4 cut(s)	238, 608, 611, 846
TspDTI	ATGAA	4 cut(s)	150, 449, 908, 926
TspGWI	ACGGA	2 cut(s)	813, 938
TspRI	CASTG	2 cut(s)	508, 1017
XapI	RAATTY	7 cut(s)	187, 370, 436, 553, 580, 879, 1064
XceI	RCATGY	3 cut(s)	415, 632, 846
XmiI	GTMKAC	1 cut(s)	818
XspI	CTAG	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.