FvH4_5g21730

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
13128010 .. 13131469
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21730.t1

Sequence Viewer

Length: 1713 bp
ATGTCAGGTTTACCCCCAGCTGCTGTGAGACTCATTTTTAACCAATGTTTGTTTCAGTACCAATTGCTTTGTTTGGAATTGTCCAAGGTTCAATCTTTATCAAGAACCAAACAATTGCATGCTTTGATCATCAAGACCCATCTTTCCCATGACCCATTTTACGCAACAAGAATGGTCAGACACTATGCAGTCAATGGTGACCTTCATTCTGCACGTAAAGTGTTCGATGAAAGTCCCAGCCGAAGTGTTTATCTCTGGAACTCCATAATTCGAGCCCACGCTCAAGCTCACAGATTTGACCATGCATTTTCTCTGTTTAATAGGATGCTTAGAAGTGAAACCAAGCCTGATAACTTCACTTATGCTTGTCTTATACGTGCCTGCTCTGACAGTCTTGACTTAGATGGACTGAGACTCGTCCATTGTGGAGTTGCAGTTTCTGGGTTGGGATTGGATTCCATTTGTAGTAGTGCACTTGTTACTGCTTATTCAAAACTGGGTCTTGTTGATGAAGCAAGTAGGGTGTTTCATTTGACGCCGCAGCCGGACTTGGTAATGTGGAATTCTATGATTTCGAGTTGTGGAAATTTCGGGTTTTGGGATAAAGGGCTAGAACTATTTAGTATGATGAGATGCAGGAAGGTAGGGCCTGATGGATATACATTTGTTGGGTTGCTTTCGGGTTTGAAAGATTCGAGCTTGATAAGTGTTGGCCAAGGAATACATGGTCTTTGTTTGAAAAGTAACTTGGATTGTAATGATCATGTATGTAGTGTACTTGTGAGCATGTATTCAAGATGTAAATGTATGGAGTCTGCACATAAAGTTTTTAGTGGTTTGTTTGAGCCAGATTTAGTTACTTGGTCTTCTTTGATAACTGGGTATTCTCAGTCTGGAGATTATGAAAAGGCATTGTTGTTCTTCAAGTGTTTGAACATGGAAGGCAAGAAGGCAGATCCTATTTTGATTGCCAGTGTGTTGGCTGCTGCTTCTCAGATAGCAAATGTAGGGCCGGGTAGTGAGATACATGCTTATGTTGTTCGACGAGGAACTGTATCAGATGTGATGGTTTCTTCTGCTCTCATAGCCATGTATTCAAAGTGTGGTTTCATGAGAATGGGGATTCGTGTTTTTGAGGCAATGCCAGAGAAGAATATTGTTTCATACAATTCATTAATATTGGGTTTTGGTTTGCATGGACTTGCGTCTGAGGCGTTTAGAATGTTCAATGAGATACTGAGAAACGGATTAGTACCTGATGAATCTACTTTTTCTGCTCTTCTTTCTGCATGCTGCCATTCTGGGCTTGTCAAAGATGGCCGAGAAATTTTTAGAAAAATGAGAGAAGAGTTTGGCATTGAAGCTAGAGCAGAGCATTATGTTCATCTGGTGAAGCTTCTTGGGATGGAGGGCAGGTTGGAAGAGGCTTACAATCTGATCTTGTGCTTGCCAGAACCTGTGGACAGTGGCATTTGGGGATCCCTTTTATCATGCTGTGATGCCTGTGGGGATTCCGAGCTGGCAGAAATTATAGCTCAGAAGCTCTTTGAAAGTAGTTCCGAGAAAACTGCTTACAGAGTCATGCTTTCGAATATATATGCTGGTGATCGAAGGTGGGATGAATCAAAGAGAGTAAGGGATTACATAACAGAAGGCCAATTGAGGAAAACAACTGGGTTTAGCTGGATTAAAGGTTTTAGCCGTTCTGCATGA

Protein Analysis

571

Amino Acids

63.32

Weight (kDa)

7.78

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 82 - 129 1.3e-12 PPR repeat family
PPR_2 PF13041 182 - 229 1.1e-08 PPR repeat family
PPR PF01535 185 - 214 1.3e-06 PPR repeat
PPR PF01535 286 - 311 9.3e-06 PPR repeat
PPR_2 PF13041 384 - 433 1.4e-12 PPR repeat family
PPR PF01535 387 - 417 6.1e-06 PPR repeat
PPR_1 PF12854 415 - 448 4.1e-06 PPR repeat
E_motif PF20431 504 - 564 3.2e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013998)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1404
AciI CCGC 1 cut(s) 539
AclWI GGATC 3 cut(s) 950, 1473, 1486
AcoI YGGCCR 2 cut(s) 712, 1318
AcsI RAATTY 3 cut(s) 562, 586, 1326
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 3 cut(s) 59, 777, 1254
AjuI GAANNNNNNNTTGG 4 cut(s) 36, 68, 731, 763
AluBI AGCT 9 cut(s) 20, 287, 699, 1364, 1396, 1519, 1535, 1543, 1683
AluI AGCT 9 cut(s) 20, 287, 699, 1364, 1396, 1519, 1535, 1543, 1683
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 22, 406
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 3 cut(s) 950, 1473, 1486
AlwNI CAGNNNCTG 3 cut(s) 23, 440, 1457
AoxI GGCC 5 cut(s) 647, 712, 1010, 1318, 1654
ApaLI GTGCAC 1 cut(s) 471
ApeKI GCWGC 5 cut(s) 20, 541, 983, 986, 1293
ApoI RAATTY 3 cut(s) 562, 586, 1326
AseI ATTAAT 1 cut(s) 1175
AspS9I GGNCC 2 cut(s) 647, 1010
AsuC2I CCSGG 1 cut(s) 1014
AsuHPI GGTGA 3 cut(s) 209, 1402, 1616
AsuII TTCGAA 1 cut(s) 1589
BaeGI GKGCMC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 714
BamHI GGATCC 1 cut(s) 1478
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 5 cut(s) 7, 553, 970, 973, 1280
BccI CCATC 6 cut(s) 147, 398, 647, 1060, 1310, 1399
BceAI ACGGC 1 cut(s) 1686
BcgI CGANNNNNNTGC 2 cut(s) 1550, 1584
BclI TGATCA 2 cut(s) 126, 760
BcnI CCSGG 1 cut(s) 1014
BcoDI GTCTC 2 cut(s) 22, 406
BfaI CTAG 2 cut(s) 611, 1365
BfuAI ACCTGC 1 cut(s) 1404
BisI GCNGC 6 cut(s) 21, 539, 542, 984, 987, 1294
BlsI GCNGC 6 cut(s) 22, 540, 543, 985, 988, 1295
Bme1390I CCNGG 1 cut(s) 1014
BmgT120I GGNCC 2 cut(s) 647, 1010
BmiI GGNNCC 1 cut(s) 1480
BmrFI CCNGG 1 cut(s) 1014
BmrI ACTGGG 3 cut(s) 506, 888, 1683
BmsI GCATC 3 cut(s) 315, 623, 1489
BmuI ACTGGG 3 cut(s) 506, 888, 1683
BoxI GACNNNNGTC 1 cut(s) 1204
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 1 cut(s) 915
Bpu14I TTCGAA 1 cut(s) 1589
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 1014
BsaAI YACGTR 2 cut(s) 215, 377
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 84, 715
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 1400, 1430
Bse1I ACTGG 4 cut(s) 501, 883, 972, 1678
Bse3DI GCAATG 1 cut(s) 1146
BseDI CCNNGG 2 cut(s) 84, 715
BseGI GGATG 3 cut(s) 330, 1410, 1624
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 6 cut(s) 401, 902, 1007, 1200, 1229, 1550
BseNI ACTGG 4 cut(s) 501, 883, 972, 1678
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 5 cut(s) 7, 553, 970, 973, 1280
BseYI CCCAGC 2 cut(s) 16, 236
BsgI GTGCAG 2 cut(s) 195, 801
BshFI GGCC 5 cut(s) 649, 714, 1012, 1320, 1656
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 545, 1013
BslFI GGGAC 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 22, 406
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 5 cut(s) 649, 714, 1012, 1320, 1656
Bsp119I TTCGAA 1 cut(s) 1589
Bsp1286I GDGCHC 2 cut(s) 277, 475
Bsp143I GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
BspACI CCGC 1 cut(s) 539
BspANI GGCC 5 cut(s) 649, 714, 1012, 1320, 1656
BspCNI CTCAG 6 cut(s) 402, 901, 1006, 1201, 1230, 1549
BspHI TCATGA 1 cut(s) 1110
BspLI GGNNCC 1 cut(s) 1480
BspMI ACCTGC 1 cut(s) 1404
BspPI GGATC 3 cut(s) 950, 1473, 1486
BspQI GCTCTTC 1 cut(s) 1284
BspT104I TTCGAA 1 cut(s) 1589
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 4 cut(s) 501, 883, 972, 1678
BssECI CCNNGG 2 cut(s) 84, 715
BssMI GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 84, 715
Bst4CI ACNGT 3 cut(s) 392, 1054, 1466
Bst6I CTCTTC 3 cut(s) 1284, 1341, 1416
BstACI GRCGYC 1 cut(s) 536
BstBAI YACGTR 2 cut(s) 215, 377
BstBI TTCGAA 1 cut(s) 1589
BstC8I GCNNGC 5 cut(s) 120, 382, 1291, 1448, 1521
BstDEI CTNAG 8 cut(s) 329, 400, 410, 888, 993, 1209, 1238, 1536
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 3 cut(s) 330, 1410, 1624
BstKTI GATC 6 cut(s) 129, 763, 958, 1440, 1481, 1609
BstMAI GTCTC 2 cut(s) 22, 406
BstMBI GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
BstMWI GCNNNNNNNGC 2 cut(s) 1085, 1211
BstNSI RCATGY 4 cut(s) 122, 790, 1031, 1293
BstPAI GACNNNNGTC 1 cut(s) 1204
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 1012
BstSLI GKGCMC 1 cut(s) 475
BstV1I GCAGC 5 cut(s) 7, 553, 970, 973, 1280
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 2 cut(s) 955, 1478
BstXI CCANNNNNNTGG 1 cut(s) 979
BstYI RGATCY 2 cut(s) 955, 1478
BsuRI GGCC 5 cut(s) 649, 714, 1012, 1320, 1656
BtsCI GGATG 3 cut(s) 330, 1410, 1624
BtsIMutI CAGTG 2 cut(s) 979, 1471
BveI ACCTGC 1 cut(s) 1404
Cac8I GCNNGC 5 cut(s) 120, 382, 1291, 1448, 1521
CaiI CAGNNNCTG 3 cut(s) 23, 440, 1457
CciI TCATGA 1 cut(s) 1110
Cfr13I GGNCC 2 cut(s) 647, 1010
CseI GACGC 2 cut(s) 544, 1194
Csp6I GTAC 3 cut(s) 58, 776, 1253
CviQI GTAC 3 cut(s) 58, 776, 1253
DdeI CTNAG 8 cut(s) 329, 400, 410, 888, 993, 1209, 1238, 1536
DpnI GATC 6 cut(s) 128, 762, 957, 1439, 1480, 1608
DpnII GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
EaeI YGGCCR 2 cut(s) 712, 1318
Eam1104I CTCTTC 3 cut(s) 1284, 1341, 1416
EarI CTCTTC 3 cut(s) 1284, 1341, 1416
Eco130I CCWWGG 2 cut(s) 84, 715
Eco24I GRGCYC 1 cut(s) 277
Eco91I GGTNACC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 647
EcoO65I GGTNACC 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 84, 715
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 2 cut(s) 84, 715
FaqI GGGAC 1 cut(s) 219
FbaI TGATCA 2 cut(s) 126, 760
Fnu4HI GCNGC 6 cut(s) 21, 539, 542, 984, 987, 1294
FokI GGATG 3 cut(s) 337, 1417, 1631
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 6 cut(s) 21, 539, 542, 984, 987, 1294
FspBI CTAG 2 cut(s) 611, 1365
GluI GCNGC 6 cut(s) 21, 539, 542, 984, 987, 1294
GsaI CCCAGC 2 cut(s) 20, 240
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 5 cut(s) 649, 714, 1012, 1320, 1656
HapII CCGG 2 cut(s) 545, 1013
HgaI GACGC 2 cut(s) 544, 1194
Hin1I GRCGYC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 1394
HpaII CCGG 2 cut(s) 545, 1013
HphI GGTGA 3 cut(s) 209, 1402, 1616
Hpy166II GTNNAC 4 cut(s) 11, 473, 776, 1462
Hpy188I TCNGA 9 cut(s) 179, 388, 996, 1060, 1210, 1437, 1516, 1539, 1561
Hpy188III TCNNGA 7 cut(s) 102, 133, 256, 395, 795, 894, 1111
Hpy8I GTNNAC 4 cut(s) 11, 473, 776, 1462
Hpy99I CGWCG 1 cut(s) 1047
HpyAV CCTTC 6 cut(s) 212, 634, 935, 943, 1605, 1646
HpyCH4III ACNGT 3 cut(s) 392, 1054, 1466
HpyCH4IV ACGT 2 cut(s) 214, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 1085, 1211
HpyF3I CTNAG 8 cut(s) 329, 400, 410, 888, 993, 1209, 1238, 1536
HpySE526I ACGT 2 cut(s) 214, 376
Hsp92I GRCGYC 1 cut(s) 536
Ksp22I TGATCA 2 cut(s) 126, 760
Kzo9I GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
LguI GCTCTTC 1 cut(s) 1284
Lsp1109I GCAGC 5 cut(s) 7, 553, 970, 973, 1280
LweI GCATC 3 cut(s) 315, 623, 1489
MaeI CTAG 2 cut(s) 611, 1365
MaeII ACGT 2 cut(s) 214, 376
MaeIII GTNAC 4 cut(s) 197, 478, 743, 856
MalI GATC 6 cut(s) 128, 762, 957, 1439, 1480, 1608
MboI GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
MboII GAAGA 7 cut(s) 858, 913, 1065, 1162, 1271, 1358, 1433
MfeI CAATTG 3 cut(s) 62, 113, 1658
MflI RGATCY 2 cut(s) 955, 1478
MhlI GDGCHC 2 cut(s) 277, 475
MlsI TGGCCA 1 cut(s) 714
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 4 cut(s) 24, 408, 821, 1587
MmeI TCCRAC 1 cut(s) 1398
MnlI CCTC 6 cut(s) 1040, 1129, 1204, 1402, 1417, 1656
Mox20I TGGCCA 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 307
MscI TGGCCA 1 cut(s) 714
MseI TTAA 4 cut(s) 39, 318, 1175, 1689
MslI CAYNNNNRTG 3 cut(s) 1032, 1088, 1115
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 545, 1013
MspR9I CCNGG 1 cut(s) 1014
MunI CAATTG 3 cut(s) 62, 113, 1658
MwoI GCNNNNNNNGC 2 cut(s) 1085, 1211
NciI CCSGG 1 cut(s) 1014
NdeII GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
NlaIV GGNNCC 1 cut(s) 1480
NmeAIII GCCGAG 1 cut(s) 1346
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 4 cut(s) 122, 790, 1031, 1293
NspV TTCGAA 1 cut(s) 1589
PaeI GCATGC 2 cut(s) 122, 1293
PagI TCATGA 1 cut(s) 1110
PciSI GCTCTTC 1 cut(s) 1284
PfeI GAWTC 6 cut(s) 455, 692, 1123, 1262, 1511, 1622
PkrI GCNGC 6 cut(s) 22, 540, 543, 985, 988, 1295
PleI GAGTC 4 cut(s) 24, 408, 820, 1586
PpsI GAGTC 4 cut(s) 24, 408, 820, 1586
Ppu21I YACGTR 2 cut(s) 215, 377
PshAI GACNNNNGTC 1 cut(s) 1204
PshBI ATTAAT 1 cut(s) 1175
PspEI GGTNACC 1 cut(s) 197
PspFI CCCAGC 2 cut(s) 16, 236
PspN4I GGNNCC 1 cut(s) 1480
PspPI GGNCC 2 cut(s) 647, 1010
PstNI CAGNNNCTG 3 cut(s) 23, 440, 1457
PsuI RGATCY 2 cut(s) 955, 1478
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 3 cut(s) 59, 777, 1254
RsaNI GTAC 3 cut(s) 58, 776, 1253
RseI CAYNNNNRTG 3 cut(s) 1032, 1088, 1115
SapI GCTCTTC 1 cut(s) 1284
SaqAI TTAA 4 cut(s) 39, 318, 1175, 1689
SatI GCNGC 6 cut(s) 21, 539, 542, 984, 987, 1294
Sau3AI GATC 6 cut(s) 126, 760, 955, 1437, 1478, 1606
Sau96I GGNCC 2 cut(s) 647, 1010
SchI GAGTC 4 cut(s) 24, 408, 821, 1587
ScrFI CCNGG 1 cut(s) 1014
SduI GDGCHC 2 cut(s) 277, 475
SfaNI GCATC 3 cut(s) 315, 623, 1489
SfuI TTCGAA 1 cut(s) 1589
SmiMI CAYNNNNRTG 3 cut(s) 1032, 1088, 1115
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
SphI GCATGC 2 cut(s) 122, 1293
SsiI CCGC 1 cut(s) 539
SspI AATATT 2 cut(s) 1156, 1179
SspMI CTAG 2 cut(s) 611, 1365
StyD4I CCNGG 1 cut(s) 1012
StyI CCWWGG 2 cut(s) 84, 715
TaaI ACNGT 3 cut(s) 392, 1054, 1466
TaiI ACGT 2 cut(s) 217, 379
TaqI TCGA 7 cut(s) 225, 271, 575, 695, 1042, 1589, 1609
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 6 cut(s) 455, 692, 1123, 1262, 1511, 1622
Tru1I TTAA 4 cut(s) 39, 318, 1175, 1689
Tru9I TTAA 4 cut(s) 39, 318, 1175, 1689
TscAI CASTG 2 cut(s) 979, 1471
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 5 cut(s) 20, 541, 983, 986, 1293
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 1260
TspRI CASTG 2 cut(s) 979, 1471
VneI GTGCAC 1 cut(s) 471
VspI ATTAAT 1 cut(s) 1175
XapI RAATTY 3 cut(s) 562, 586, 1326
XceI RCATGY 4 cut(s) 122, 790, 1031, 1293
XcmI CCANNNNNNNNNTGG 1 cut(s) 722
XspI CTAG 2 cut(s) 611, 1365
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.