Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013998

Physical Location & Seq

Genomic Coordinates Forward (+)

30855357 .. 30855920

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1168500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTCATGATTTCCTCTGCACTTATAGCCATGTATTCAAAGTGCGGCTTCTTGGGGATGGGTACTCGTGTTTTTGAGATCATGCCAGAGAAGAATATTGTTTCGTACAATTCTTTAATATTGGGTCTTGGTTTGCATGGACTTGCCTCCGAGGCCTTTAGAATGTTTGATGAGATACTCAGAAACGGATTGAAACCTGATGAGTCTACATTTTCTGCTCTCCCTTGTGCATGCTGCCATGCTGGCCTTGTCGAAGATGGCCGGGAAATTTTCAGAAGAATGAAAGATGAGTTTTGCATTCAAGCTAGAACGGAGCATTATGTTCATATGGTGAAACTTCTTGGGATGGAAGGAAGATTGGAAGAGGCTTACTATCTAATTTTGTCCTTGCCTGAGCCAGTGGACAGCGGCATATGGGGAGCCCTTTTATTGTGCTGTGATGTATGTGGAAATTTGGAGCTGGCAGAAATTGTAGCCCGAAGGCTCTTTGAAAGTAATTTGGAGAAAAGTGCTTACAGAGTCATGCTTTCAAATATATATGGTGGGATGATGCAAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

188

Amino Acids

20.98

Weight (kDa)

5.42

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	31 - 80	1.7e-11	PPR repeat family
PPR	PF01535	34 - 64	1.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64310
fragaria_vesca	FvH4_5g21730
malus_domestica	MD06G1168400.v1.1 MD06G1168500.v1.1 MD06G1168800.v1.1 MD06G1168900.v1.1
pyrus_communis	pycom06g15010 pycom06g15040
rosa_chinensis	RchiOBHm_Chr7g0192851
rosa_laevigata	RLG00000004320
rosa_roxburghii	Rroxscaffold_3G00262620
rosa_rugosa	Rorug07G0005100
rosa_samantha	Rh7AG130700 Rh7BG131600 Rh7CG134900 Rh7DG132700
rosa_wichuraiana	Rw7G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	2 cut(s)	45, 408
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	267, 451
AfaI	GTAC	2 cut(s)	64, 107
AgsI	TTSAA	5 cut(s)	39, 193, 302, 491, 531
AluBI	AGCT	2 cut(s)	305, 460
AluI	AGCT	2 cut(s)	305, 460
AoxI	GGCC	3 cut(s)	153, 244, 259
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	2 cut(s)	267, 451
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BanII	GRGCYC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	3 cut(s)	52, 251, 340
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	306
BglI	GCCNNNNNGGC	2 cut(s)	152, 243
BisI	GCNGC	3 cut(s)	46, 235, 409
BlsI	GCNGC	3 cut(s)	47, 236, 410
Bme1390I	CCNGG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	63, 351, 552
BseMII	CTCAG	2 cut(s)	193, 384
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	3 cut(s)	155, 246, 261
BsiSI	CCGG	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	155, 246, 261
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	45, 408
BspANI	GGCC	3 cut(s)	155, 246, 261
BspCNI	CTCAG	2 cut(s)	192, 385
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	232, 244, 462
BstDEI	CTNAG	2 cut(s)	179, 393
BstF5I	GGATG	3 cut(s)	63, 351, 552
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 152, 243
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	155, 246, 261
BtsCI	GGATG	3 cut(s)	63, 351, 552
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	3 cut(s)	232, 244, 462
CciI	TCATGA	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	63, 106
CviAII	CATG	7 cut(s)	7, 31, 82, 137, 231, 239, 523
CviQI	GTAC	2 cut(s)	63, 106
DdeI	CTNAG	2 cut(s)	179, 393
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	7 cut(s)	10, 34, 85, 140, 234, 242, 526
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	7 cut(s)	6, 30, 81, 136, 230, 238, 522
FauNDI	CATATG	2 cut(s)	327, 413
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	46, 235, 409
FokI	GGATG	3 cut(s)	70, 358, 559
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	3 cut(s)	46, 235, 409
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	3 cut(s)	46, 235, 409
HaeIII	GGCC	3 cut(s)	155, 246, 261
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	7 cut(s)	10, 34, 85, 140, 234, 242, 526
HinfI	GANTC	2 cut(s)	203, 519
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	207, 403
Hpy188I	TCNGA	3 cut(s)	151, 182, 275
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	2 cut(s)	207, 403
HpyAV	CCTTC	2 cut(s)	344, 474
HpyCH4V	TGCA	5 cut(s)	20, 136, 230, 297, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 152, 243
HpyF3I	CTNAG	2 cut(s)	179, 393
Hsp92II	CATG	7 cut(s)	10, 34, 85, 140, 234, 242, 526
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	313, 419, 457
LpnPI	CCDG	7 cut(s)	99, 210, 228, 275, 405, 411, 446
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	306
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	5 cut(s)	103, 266, 288, 366, 374
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	6 cut(s)	109, 267, 378, 451, 468, 496
MlyI	GAGTC	2 cut(s)	212, 528
MnlI	CCTC	4 cut(s)	25, 145, 157, 358
MseI	TTAA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	26, 152, 243
NciI	CCSGG	1 cut(s)	263
NdeI	CATATG	2 cut(s)	327, 413
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	7 cut(s)	10, 34, 85, 140, 234, 242, 526
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	234
PagI	TCATGA	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	155
PctI	GAATGC	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	47, 236, 410
PleI	GAGTC	2 cut(s)	211, 527
PpsI	GAGTC	2 cut(s)	211, 527
PspN4I	GGNNCC	1 cut(s)	421
RsaI	GTAC	2 cut(s)	64, 107
RsaNI	GTAC	2 cut(s)	63, 106
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	3 cut(s)	46, 235, 409
Sau3AI	GATC	1 cut(s)	78
SchI	GAGTC	2 cut(s)	212, 528
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	3 cut(s)	199, 307, 462
SfaNI	GCATC	1 cut(s)	540
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	6 cut(s)	109, 267, 378, 451, 468, 496
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	45, 408
SspI	AATATT	2 cut(s)	97, 120
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	261
TaqI	TCGA	1 cut(s)	252
TasI	AATT	6 cut(s)	109, 267, 378, 451, 468, 496
TauI	GCSGC	2 cut(s)	48, 411
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	296, 314
TspGWI	ACGGA	2 cut(s)	201, 326
TspRI	CASTG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	267, 451
XceI	RCATGY	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.