Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013998

Physical Location & Seq

Genomic Coordinates Forward (+)

30854653 .. 30855087

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1168400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCGTAGAACTGAAATCAAACCGGATAACTTCACTCATGCTTGCATTGTACGTGCCTGCGCTGATAGTTTTGATTTGGATGGACTGAAGCTTGTGCATTGTGGAGTAATGGTTGCAGGACTCAGCCTTGTTGATGAAGCAATCAGGGTGTTTAATGGGATTCGACAGCCGGATTTGGTTTTATGGAATTCGATGATTTCGGGTTATGGAAGTGGCGGGTTTTGGGATACAGGTTTGCAGCTGTTTAGTGAGATGAGAAGCCATGGAGCTGGTGCCGGATGGATACACAATTGTTGGGTTGCTTTTGGGTTTAGCGGATTCGAGCTTGATAAGTATTGGAGAGGGAATACATGGTCTTTGTTTGAAATGGAATTTAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

5.72

Isoelectric Point (pI)

25.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	60 - 89	4.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64310
fragaria_vesca	FvH4_5g21730
malus_domestica	MD06G1168400.v1.1 MD06G1168500.v1.1 MD06G1168800.v1.1 MD06G1168900.v1.1
pyrus_communis	pycom06g15010 pycom06g15040
rosa_chinensis	RchiOBHm_Chr7g0192851
rosa_laevigata	RLG00000004320
rosa_roxburghii	Rroxscaffold_3G00262620
rosa_rugosa	Rorug07G0005100
rosa_samantha	Rh7AG130700 Rh7BG131600 Rh7CG134900 Rh7DG132700
rosa_wichuraiana	Rw7G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	2 cut(s)	216, 315
AcsI	RAATTY	2 cut(s)	187, 371
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	4 cut(s)	91, 241, 269, 325
AluI	AGCT	4 cut(s)	91, 241, 269, 325
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	187, 371
AspLEI	GCGC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	2 cut(s)	74, 273
BciVI	GTATCC	2 cut(s)	220, 276
BfuI	GTATCC	2 cut(s)	220, 276
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	85, 284
BseMII	CTCAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	23, 170, 276
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	2 cut(s)	216, 315
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	43, 58
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	85, 284
BstHHI	GCGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	269
BsuI	GTATCC	2 cut(s)	220, 276
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	85, 284
Cac8I	GCNNGC	2 cut(s)	43, 58
CfoI	GCGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	3 cut(s)	38, 263, 351
CviJI	RGCY	7 cut(s)	91, 126, 169, 241, 261, 269, 325
CviKI_1	RGCY	7 cut(s)	91, 126, 169, 241, 261, 269, 325
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	41, 266, 354
FaiI	YATR	5 cut(s)	39, 184, 207, 264, 352
FatI	CATG	3 cut(s)	37, 262, 350
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	92, 291
Fsp4HI	GCNGC	1 cut(s)	239
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	239
HapII	CCGG	3 cut(s)	23, 170, 276
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	41, 266, 354
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	4 cut(s)	120, 160, 318, 378
HpaII	CCGG	3 cut(s)	23, 170, 276
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	45, 97, 116, 238
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	41, 266, 354
HspAI	GCGC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	8 cut(s)	36, 70, 102, 130, 183, 216, 255, 289
Lsp1109I	GCAGC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	289
MluCI	AATT	3 cut(s)	187, 289, 371
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	3 cut(s)	23, 170, 276
MunI	CAATTG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	262
NlaIII	CATG	3 cut(s)	41, 266, 354
NlaIV	GGNNCC	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	160, 318, 378
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	114
SetI	ASST	6 cut(s)	55, 93, 235, 243, 271, 327
Sse9I	AATT	3 cut(s)	187, 289, 371
SsiI	CCGC	2 cut(s)	216, 315
StyI	CCWWGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	163, 191, 321
TasI	AATT	3 cut(s)	187, 289, 371
TfiI	GAWTC	3 cut(s)	160, 318, 378
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	150
XapI	RAATTY	2 cut(s)	187, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.