Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015183

Physical Location & Seq

Genomic Coordinates Forward (+)

23936975 .. 23939899

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTGGGAATATTCTGGTGACCGGTGGTGCTGGTTACATCGGAAGTCACACGGTTCTTCAGCTTCTTCTCGGAGGCTATAACACCGTCGTTATAGACAACCTCGACAATTCCTCTCTCGTTTCGATCCAACGCGTCAAGGATCTCGCCGGAGATCATGGACAAAATCTCACCGTCCACCAGGTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAAGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTGGCGAAACCACTTCTGTATTATAACAATAACTTGATTGCGACTATTACACTTTTGGAAGTAATGGCTGCACACGGATGTAAAAAGCTTGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGCTGTTCATAGAGGACATTTGCCGTGATGTACAACGTGGTGATCCTGAATGGAGAATCATAATGCTGAGGTACTTTAACCCTGTGGGAGCTCACCCTAGCGGTCGCATTGGTGAGGATCCTTGTGGGACTCCAAATAATCTCATGCCTTATGTCCAGCAAGTCGTTGTTGGGAGGCTACCTAACCTAAAAATTTATGGAACTGACTATACCACTAAAGATGGCACTGGTGTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAGCTAGACGATACTGAAATAGGTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACAGTGTTGGAGATGGTTGATGCATTTGAGAAAGCTTCTGGAATGAAAATCCCACTGGTGAAGGTTGGAAGGAGACCAGGTGATGCAGAAACCGTCTATGCGTCAACAGAAAAAGCTGAACGCGAACTAAACTGGAAGGCAAATTTTGGAATCGAAGAAATGTGTAGGGATCAGTGGAACTGGGCAAGCAACAATCCTTTCGGTTACGGTTCTTCACCAAACTCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

348

Amino Acids

38.12

Weight (kDa)

5.54

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	4 - 166	1.8e-10	RmlD substrate binding domain
Epimerase	PF01370	5 - 267	7e-56	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	5 - 183	7.7e-13	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	6 - 329	1.1e-64	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	6 - 140	1.6e-12	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	9 - 159	5e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64440 AT4G10960 AT4G23920
fragaria_vesca	FvH4_5g04740
malus_domestica	MD06G1108600.v1.1 MD14G1129500.v1.1
prunus_persica	Prupe.5G121200_v2.0.a1
pyrus_communis	pycom06g10200
rosa_chinensis	RchiOBHm_Chr7g0194661
rosa_laevigata	RLG00000004185
rosa_multiflora	Rmu_sc0008345.1_g000004 Rmu_sc0010033.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261220
rosa_rugosa	Rorug07G0016500
rosa_samantha	Rh7BG144400
rosa_wichuraiana	Rw7G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	3 cut(s)	135, 195, 939
AciI	CCGC	3 cut(s)	204, 387, 570
AclWI	GGATC	6 cut(s)	121, 150, 506, 581, 594, 993
AcoI	YGGCCR	2 cut(s)	404, 736
AcsI	RAATTY	2 cut(s)	660, 958
AcuI	CTGAAG	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	184
AfaI	GTAC	4 cut(s)	424, 501, 542, 702
AfiI	CCNNNNNNNGG	2 cut(s)	184, 443
AflIII	ACRYGT	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	265, 755
AjnI	CCWGG	3 cut(s)	180, 795, 892
AluBI	AGCT	7 cut(s)	64, 370, 472, 560, 760, 851, 932
AluI	AGCT	7 cut(s)	64, 370, 472, 560, 760, 851, 932
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	3 cut(s)	438, 699, 883
AlwI	GGATC	6 cut(s)	121, 150, 506, 581, 594, 993
AoxI	GGCC	2 cut(s)	404, 736
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	660, 958
AsiGI	ACCGGT	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	9 cut(s)	31, 163, 287, 521, 554, 593, 886, 908, 1023
AvaII	GGWCC	1 cut(s)	187
BalI	TGGCCA	2 cut(s)	406, 738
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	562
BbvCI	CCTCAGC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	3 cut(s)	683, 728, 823
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	3 cut(s)	182, 797, 894
BcoDI	GTCTC	3 cut(s)	438, 699, 883
BfaI	CTAG	3 cut(s)	567, 728, 761
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	182, 797, 894
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	3 cut(s)	417, 588, 802
BmrFI	CCNGG	3 cut(s)	182, 797, 894
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	3 cut(s)	229, 826, 889
BmuI	ACTGGG	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	883
BsaJI	CCNNGG	1 cut(s)	796
BsaWI	WCCGGW	2 cut(s)	23, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 443
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	4 cut(s)	700, 876, 953, 1001
BseBI	CCWGG	3 cut(s)	182, 797, 894
BseDI	CCNNGG	1 cut(s)	796
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	184, 443
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	4 cut(s)	700, 876, 953, 1001
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	3 cut(s)	135, 195, 939
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	2 cut(s)	406, 738
BshTI	ACCGGT	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	3 cut(s)	24, 150, 804
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	184, 443
BsmAI	GTCTC	3 cut(s)	438, 699, 883
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	406, 738
Bso31I	GGTCTC	1 cut(s)	883
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp1407I	TGTACA	2 cut(s)	422, 499
Bsp143I	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	3 cut(s)	204, 387, 570
BspANI	GGCC	2 cut(s)	406, 738
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	3 cut(s)	135, 195, 939
BspLI	GGNNCC	3 cut(s)	417, 588, 802
BspPI	GGATC	6 cut(s)	121, 150, 506, 581, 594, 993
BspTNI	GGTCTC	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	2 cut(s)	422, 499
BsrI	ACTGG	4 cut(s)	700, 876, 953, 1001
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	796
BssMI	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
BssNAI	GTATAC	1 cut(s)	790
Bst1107I	GTATAC	1 cut(s)	790
Bst2UI	CCWGG	3 cut(s)	182, 797, 894
Bst4CI	ACNGT	7 cut(s)	55, 88, 175, 394, 820, 910, 1025
Bst6I	CTCTTC	1 cut(s)	423
BstAUI	TGTACA	2 cut(s)	422, 499
BstC8I	GCNNGC	2 cut(s)	404, 1003
BstDEI	CTNAG	1 cut(s)	536
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	365
BstFNI	CGCG	3 cut(s)	135, 195, 939
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	7 cut(s)	129, 145, 157, 514, 589, 727, 988
BstMAI	GTCTC	3 cut(s)	438, 699, 883
BstMBI	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	1 cut(s)	757
BstNI	CCWGG	3 cut(s)	182, 797, 894
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	3 cut(s)	180, 795, 892
BstUI	CGCG	3 cut(s)	135, 195, 939
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	142, 586
BstYI	RGATCY	2 cut(s)	142, 586
BstZ17I	GTATAC	1 cut(s)	790
BsuRI	GGCC	2 cut(s)	406, 738
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	4 cut(s)	693, 825, 869, 995
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	404, 1003
CfoI	GCGC	1 cut(s)	751
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	2 cut(s)	124, 906
CsiI	ACCWGGT	2 cut(s)	180, 892
Csp6I	GTAC	4 cut(s)	423, 500, 541, 701
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	3 cut(s)	158, 613, 716
CviQI	GTAC	4 cut(s)	423, 500, 541, 701
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	7 cut(s)	128, 144, 156, 513, 588, 726, 987
DpnII	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	2 cut(s)	404, 736
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	180, 795, 892
EcoT22I	ATGCAT	2 cut(s)	252, 841
EcoT38I	GRGCYC	1 cut(s)	562
FaeI	CATG	3 cut(s)	161, 616, 719
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	3 cut(s)	157, 612, 715
FauI	CCCGC	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	3 cut(s)	567, 728, 761
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	406, 738
HapII	CCGG	3 cut(s)	24, 150, 804
HgaI	GACGC	2 cut(s)	124, 906
HhaI	GCGC	1 cut(s)	751
Hin1II	CATG	3 cut(s)	161, 616, 719
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HindIII	AAGCTT	2 cut(s)	368, 849
HinfI	GANTC	5 cut(s)	431, 451, 525, 598, 966
HpaII	CCGG	3 cut(s)	24, 150, 804
HphI	GGTGA	9 cut(s)	31, 163, 287, 521, 554, 593, 886, 908, 1023
Hpy166II	GTNNAC	5 cut(s)	178, 187, 701, 790, 921
Hpy188I	TCNGA	3 cut(s)	44, 74, 226
Hpy188III	TCNNGA	4 cut(s)	194, 444, 515, 855
Hpy8I	GTNNAC	5 cut(s)	178, 187, 701, 790, 921
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	5 cut(s)	200, 208, 871, 879, 946
HpyCH4III	ACNGT	7 cut(s)	55, 88, 175, 394, 820, 910, 1025
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	5 cut(s)	242, 250, 353, 839, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	757
HpyF3I	CTNAG	1 cut(s)	536
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	3 cut(s)	161, 616, 719
HspAI	GCGC	1 cut(s)	749
Kzo9I	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	3 cut(s)	229, 826, 889
MabI	ACCWGGT	2 cut(s)	180, 892
MaeI	CTAG	3 cut(s)	567, 728, 761
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	4 cut(s)	19, 35, 47, 1019
MalI	GATC	7 cut(s)	128, 144, 156, 513, 588, 726, 987
MboI	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
MboII	GAAGA	6 cut(s)	50, 59, 372, 440, 983, 1020
MflI	RGATCY	2 cut(s)	142, 586
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	2 cut(s)	406, 738
MluCI	AATT	3 cut(s)	109, 660, 958
MluI	ACGCGT	1 cut(s)	133
MluNI	TGGCCA	2 cut(s)	406, 738
MlyI	GAGTC	3 cut(s)	440, 460, 592
MmeI	TCCRAC	3 cut(s)	154, 804, 862
MnlI	CCTC	9 cut(s)	68, 113, 124, 406, 475, 531, 577, 636, 778
Mox20I	TGGCCA	2 cut(s)	406, 738
Mph1103I	ATGCAT	2 cut(s)	252, 841
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	2 cut(s)	406, 738
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	2 cut(s)	358, 744
Msp20I	TGGCCA	2 cut(s)	406, 738
MspI	CCGG	3 cut(s)	24, 150, 804
MspR9I	CCNGG	3 cut(s)	182, 797, 894
MvaI	CCWGG	3 cut(s)	182, 797, 894
MvnI	CGCG	3 cut(s)	135, 195, 939
MwoI	GCNNNNNNNGC	1 cut(s)	757
NdeII	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
NlaIII	CATG	3 cut(s)	161, 616, 719
NlaIV	GGNNCC	3 cut(s)	417, 588, 802
NmuCI	GTSAC	2 cut(s)	19, 47
NruI	TCGCGA	1 cut(s)	195
NsiI	ATGCAT	2 cut(s)	252, 841
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	525, 966
PflMI	CCANNNNNTGG	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	3 cut(s)	439, 459, 592
PpsI	GAGTC	3 cut(s)	439, 459, 592
PsiI	TTATAA	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	3 cut(s)	180, 795, 892
PspEI	GGTNACC	1 cut(s)	19
PspGI	CCWGG	3 cut(s)	180, 795, 892
PspN4I	GGNNCC	3 cut(s)	417, 588, 802
PspPI	GGNCC	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	661, 693
PsuI	RGATCY	2 cut(s)	142, 586
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	4 cut(s)	424, 501, 542, 702
RsaNI	GTAC	4 cut(s)	423, 500, 541, 701
RseI	CAYNNNNRTG	2 cut(s)	358, 744
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	7 cut(s)	126, 142, 154, 511, 586, 724, 985
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	3 cut(s)	440, 460, 592
ScrFI	CCNGG	3 cut(s)	182, 797, 894
SduI	GDGCHC	1 cut(s)	562
SexAI	ACCWGGT	2 cut(s)	180, 892
SfaNI	GCATC	3 cut(s)	229, 826, 889
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	2 cut(s)	358, 744
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	109, 660, 958
SsiI	CCGC	3 cut(s)	204, 387, 570
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	3 cut(s)	567, 728, 761
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	180, 795, 892
TaaI	ACNGT	7 cut(s)	55, 88, 175, 394, 820, 910, 1025
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	105, 125, 969
TasI	AATT	3 cut(s)	109, 660, 958
TatI	WGTACW	2 cut(s)	422, 499
TfiI	GAWTC	2 cut(s)	525, 966
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	4 cut(s)	700, 825, 876, 995
TseFI	GTSAC	2 cut(s)	19, 47
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	2 cut(s)	19, 47
TspDTI	ATGAA	3 cut(s)	466, 704, 875
TspGWI	ACGGA	2 cut(s)	372, 478
TspRI	CASTG	4 cut(s)	700, 825, 876, 995
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	660, 958
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	3 cut(s)	567, 728, 761
Zsp2I	ATGCAT	2 cut(s)	252, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.