Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

1314996 .. 1317616

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGACAAGGTGGAGCAGGAGGTGGAGAAGGTGAAGAAGGAGTGGGACGACACCTACAACAATGTCGTAGATCAAATCAAAGCCATCGAGAACTACGGCAAGTCGCCTTCTTCTTCTTCTTCTTCTACTGCCGGTGCGGAGCTAGAGCCGAAGAAGGACTCGCTGCCCAGATTGAAGGGCCTCGCGCAAGACGGCTTGTCGTTGCTCAATTCTCTGCAGTTCAAGCTCGATCTGTTCGCTCCTCAATTGCCGACCAACGATCAGGTCCAGTCCGCCAAGGCCTTGCTCGAGTCCTGGAAAAATCGATCCCAGAGTTTGAGGTTGAGTATGAGGAATGCGAATTTGCAAGCGAATGAGAATATTAGGAAAGCTGCTCAGGAAGAGAGGGAACTTCTATTGGGAGGTGGAGGAGAGTCCACAACTCGCAGGCGAAACTTGCAGACAAAGGCTGGCATGACATCTGCCGCAGAAAGCATCACAGAGAGCCTTAGGCGGACTCGTCAACTAATGGTTCAGGAGGTGGAAAGGAGCACAGGCACACTCCAGACTTTCGAGGAATCTACTGGAGTACTGAAGAAGGCTGAGACTGAATACAAAGGACACCGGAGTTTGTTAATGCGTACCAGAAACCTACTATCCACAATGCAACGCCAAGATATCATTGACAGGGTGATAATTTCAGTGGGATTTTTCCTGTTTACATGTGCGGTTCTTTATGTTGTTTCGAAGCGCATTGGTATACTGACGTTGCAGAGGAAGGTCACAGCTGCTTTCAAGGCCGGTATGGTTGGGAAAGAACTCCAGCCTGGAGCTGTTGGCAACGGTGTAAATCATGCCCCGGTCTATGACAATGTAGTTCATAAAGTTCAGGAACCTTTAGAAAGATTAATGCACGATGAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

301

Amino Acids

33.63

Weight (kDa)

9.28

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec20	PF03908	154 - 245	6.4e-29	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	1 cut(s)	185
AciI	CCGC	5 cut(s)	137, 273, 465, 493, 707
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	570, 622
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	3 cut(s)	175, 223, 775
AhdI	GACNNNNNGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	293, 805
AluBI	AGCT	5 cut(s)	142, 226, 371, 767, 812
AluI	AGCT	5 cut(s)	142, 226, 371, 767, 812
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	178, 279, 777
ApeKI	GCWGC	3 cut(s)	163, 371, 767
ApoI	RAATTY	1 cut(s)	340
AseI	ATTAAT	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	187, 732
AspS9I	GGNCC	2 cut(s)	178, 265
AsuC2I	CCSGG	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	43, 682
AsuII	TTCGAA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	150, 358, 754
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	112, 208
BciT130I	CCWGG	2 cut(s)	295, 807
BcnI	CCSGG	1 cut(s)	839
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	4 cut(s)	164, 372, 465, 768
BlsI	GCNGC	4 cut(s)	165, 373, 466, 769
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	3 cut(s)	295, 807, 839
Bme18I	GGWCC	1 cut(s)	265
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	178, 265
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	3 cut(s)	295, 807, 839
BmsI	GCATC	1 cut(s)	483
BpmI	CTGGAG	4 cut(s)	527, 585, 785, 828
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	725
BpuMI	CCSGG	1 cut(s)	839
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	276, 837
BsaWI	WCCGGW	1 cut(s)	603
Bse118I	RCCGGY	2 cut(s)	131, 779
Bse1I	ACTGG	2 cut(s)	268, 568
Bse21I	CCTNAGG	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	295, 807
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	276, 837
BseMII	CTCAG	2 cut(s)	389, 573
BseNI	ACTGG	2 cut(s)	268, 568
BseRI	GAGGAG	2 cut(s)	231, 423
BseXI	GCAGC	3 cut(s)	150, 358, 754
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	180, 281, 779
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	533
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	4 cut(s)	132, 604, 780, 839
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	180, 281, 779
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	70, 229, 259, 305
BspACI	CCGC	5 cut(s)	137, 273, 465, 493, 707
BspANI	GGCC	3 cut(s)	180, 281, 779
BspCNI	CTCAG	2 cut(s)	388, 574
BspDI	ATCGAT	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	873
BspMAI	CTGCAG	1 cut(s)	219
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	725
BsrFI	RCCGGY	2 cut(s)	131, 779
BsrI	ACTGG	2 cut(s)	268, 568
BssAI	RCCGGY	2 cut(s)	131, 779
BssECI	CCNNGG	2 cut(s)	276, 837
BssMI	GATC	4 cut(s)	70, 229, 259, 305
BssNAI	GTATAC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	276
Bst1107I	GTATAC	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	295, 807
Bst4CI	ACNGT	1 cut(s)	824
Bst6I	CTCTTC	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	3 cut(s)	348, 428, 451
BstDEI	CTNAG	3 cut(s)	375, 488, 582
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	187, 732
BstKTI	GATC	4 cut(s)	73, 232, 262, 308
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	4 cut(s)	70, 229, 259, 305
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 436, 776
BstNI	CCWGG	2 cut(s)	295, 807
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	293, 805, 837
BstSFI	CTRYAG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	150, 358, 754
BstZ17I	GTATAC	1 cut(s)	740
Bsu15I	ATCGAT	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	180, 281, 779
BsuTUI	ATCGAT	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	3 cut(s)	348, 428, 451
CfoI	GCGC	2 cut(s)	187, 732
Cfr10I	RCCGGY	2 cut(s)	131, 779
Cfr13I	GGNCC	2 cut(s)	178, 265
ClaI	ATCGAT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	569, 621
CviAII	CATG	3 cut(s)	454, 702, 833
CviQI	GTAC	2 cut(s)	569, 621
DdeI	CTNAG	3 cut(s)	375, 488, 582
DpnI	GATC	4 cut(s)	72, 231, 261, 307
DpnII	GATC	4 cut(s)	70, 229, 259, 305
DriI	GACNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	375
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	2 cut(s)	262, 508
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	293, 805
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	457, 705, 836
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	453, 701, 832
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	4 cut(s)	164, 372, 465, 768
Fsp4HI	GCNGC	4 cut(s)	164, 372, 465, 768
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	2 cut(s)	186, 731
GluI	GCNGC	4 cut(s)	164, 372, 465, 768
GsuI	CTGGAG	4 cut(s)	527, 585, 785, 828
HaeIII	GGCC	3 cut(s)	180, 281, 779
HapII	CCGG	4 cut(s)	132, 604, 780, 839
HhaI	GCGC	2 cut(s)	187, 732
Hin1II	CATG	3 cut(s)	457, 705, 836
Hin6I	GCGC	2 cut(s)	185, 730
HinP1I	GCGC	2 cut(s)	185, 730
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HinfI	GANTC	5 cut(s)	158, 290, 413, 496, 557
HpaII	CCGG	4 cut(s)	132, 604, 780, 839
HphI	GGTGA	2 cut(s)	43, 682
Hpy166II	GTNNAC	4 cut(s)	417, 503, 699, 740
Hpy188III	TCNNGA	5 cut(s)	88, 377, 515, 544, 869
Hpy8I	GTNNAC	4 cut(s)	417, 503, 699, 740
HpyAV	CCTTC	7 cut(s)	22, 31, 117, 148, 169, 571, 751
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	6 cut(s)	217, 346, 439, 646, 751, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 436, 776
HpyF3I	CTNAG	3 cut(s)	375, 488, 582
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	3 cut(s)	457, 705, 836
HspAI	GCGC	2 cut(s)	185, 730
Kzo9I	GATC	4 cut(s)	70, 229, 259, 305
LmnI	GCTCC	5 cut(s)	13, 139, 244, 528, 809
Lsp1109I	GCAGC	3 cut(s)	150, 358, 754
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	72, 231, 261, 307
MboI	GATC	4 cut(s)	70, 229, 259, 305
MboII	GAAGA	9 cut(s)	46, 102, 105, 108, 111, 114, 163, 392, 586
MfeI	CAATTG	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	4 cut(s)	208, 245, 340, 675
MlyI	GAGTC	4 cut(s)	152, 299, 422, 490
MseI	TTAA	2 cut(s)	614, 887
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	4 cut(s)	132, 604, 780, 839
MspR9I	CCNGG	3 cut(s)	295, 807, 839
MunI	CAATTG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	295, 807
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	223, 436, 776
NciI	CCSGG	1 cut(s)	839
NdeII	GATC	4 cut(s)	70, 229, 259, 305
NlaIII	CATG	3 cut(s)	457, 705, 836
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	1 cut(s)	760
NspI	RCATGY	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	725
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	281
PciI	ACATGT	1 cut(s)	701
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	165, 373, 466, 769
PleI	GAGTC	4 cut(s)	152, 298, 421, 490
PpsI	GAGTC	4 cut(s)	152, 298, 421, 490
PscI	ACATGT	1 cut(s)	701
PshBI	ATTAAT	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	293, 805
PspGI	CCWGG	2 cut(s)	293, 805
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	2 cut(s)	178, 265
PspXI	VCTCGAGB	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	2 cut(s)	570, 622
RsaNI	GTAC	2 cut(s)	569, 621
SaqAI	TTAA	2 cut(s)	614, 887
SatI	GCNGC	4 cut(s)	164, 372, 465, 768
Sau3AI	GATC	4 cut(s)	70, 229, 259, 305
Sau96I	GGNCC	2 cut(s)	178, 265
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	4 cut(s)	152, 299, 422, 490
ScrFI	CCNGG	3 cut(s)	295, 807, 839
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	215
Sfr274I	CTCGAG	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	208, 245, 340, 675
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	5 cut(s)	137, 273, 465, 493, 707
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	293, 805, 837
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	6 cut(s)	87, 228, 288, 304, 552, 725
TasI	AATT	4 cut(s)	208, 245, 340, 675
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	614, 887
Tru9I	TTAA	2 cut(s)	614, 887
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	3 cut(s)	163, 371, 767
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	1 cut(s)	848
TspRI	CASTG	1 cut(s)	687
VpaK11BI	GGWCC	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	887
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	705
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.