Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

36326932 .. 36327465

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG348300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTAATGAGAAGGGTCTGATTGTGAGTTTCGGGGAGATGCTGATCGACTTTGTGCCAACTGTTTCGGGAGTTTCACTGGCAGAATCCCCGGCTTTCTTGAAAGCCCCCGGTGGCGCCCCCGCCAACGTGGCGATCGCGGTGGCTCGGCTCGGTGGCAACGCCTCCTTCGTCGGGAAGCTCGGCGCCGACGAGTTCTGGCACATGCTTGCTGGAATCTTGAAGGAGAACGGTGTCTCCGGACAGGGCATCCTGTTGGACCAAGGCGCACGTACCGCTCTAGCCTTCGTGACCCTACGCGCTGATGGAGAGCGCGAGTTCATGTTCTACCGGAACCCTAGCGCTGATATGCTGCTCAAGCCCGAAGAGCTCAATTTCGAGCTGATCAGATCCGCCAAAGTGTTCCACTATGGATCAATAAGCTTGATTGTGGAACCATGCAGATCGCAAAAGATGCAGGTGCCTTGCTTTCCTACGACCCGAACCTCCGGCTACCACTGTGGCCCTCACCGGAGGAGGCACGCGAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

177

Amino Acids

19.16

Weight (kDa)

8.88

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	7 - 148	4.4e-30	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	448
AccB1I	GGYRCC	3 cut(s)	116, 185, 460
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	4 cut(s)	140, 300, 315, 524
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	4 cut(s)	123, 140, 276, 393
AclWI	GGATC	2 cut(s)	384, 421
AcyI	GRCGYC	2 cut(s)	117, 186
AfaI	GTAC	1 cut(s)	274
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	103, 223
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	181, 370, 382, 423
AluI	AGCT	4 cut(s)	181, 370, 382, 423
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	384, 421
Aor13HI	TCCGGA	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	1 cut(s)	352
AsiSI	GCGATCGC	1 cut(s)	138
AspLEI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
AspS9I	GGNCC	2 cut(s)	259, 503
AsuC2I	CCSGG	2 cut(s)	92, 111
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	3 cut(s)	116, 185, 460
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	92, 111
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	281, 339
BfoI	RGCGCY	3 cut(s)	120, 189, 345
BfuAI	ACCTGC	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	92, 111
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	259, 503
BmiI	GGNNCC	5 cut(s)	118, 187, 335, 435, 462
BmrFI	CCNGG	2 cut(s)	92, 111
BmsI	GCATC	3 cut(s)	30, 258, 444
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	2 cut(s)	92, 111
BsaAI	YACGTR	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	117, 186
BsaJI	CCNNGG	3 cut(s)	90, 109, 262
BsaWI	WCCGGW	3 cut(s)	239, 330, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	90, 109, 262
BseGI	GGATG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	4 cut(s)	140, 300, 315, 524
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	504
BshNI	GGYRCC	3 cut(s)	116, 185, 460
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	6 cut(s)	92, 111, 240, 331, 489, 511
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
BspACI	CCGC	4 cut(s)	123, 140, 276, 393
BspANI	GGCC	1 cut(s)	504
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	4 cut(s)	140, 300, 315, 524
BspLI	GGNNCC	5 cut(s)	118, 187, 335, 435, 462
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	384, 421
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	3 cut(s)	116, 185, 460
BsrBI	CCGCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	90, 109, 262
BssMI	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
BssNI	GRCGYC	2 cut(s)	117, 186
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	64, 233, 500
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	2 cut(s)	117, 186
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	210, 522, 526
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	4 cut(s)	140, 300, 315, 524
BstH2I	RGCGCY	3 cut(s)	120, 189, 345
BstHHI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
BstKTI	GATC	6 cut(s)	48, 138, 387, 392, 416, 446
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 275, 358, 367, 454
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	90, 109
BstUI	CGCG	4 cut(s)	140, 300, 315, 524
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	77, 496
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	210, 522, 526
CfoI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
Cfr13I	GGNCC	2 cut(s)	259, 503
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	205, 322, 438
CviQI	GTAC	1 cut(s)	273
DinI	GGCGCC	2 cut(s)	118, 187
DpnI	GATC	6 cut(s)	47, 137, 386, 391, 415, 445
DpnII	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	372
EgeI	GGCGCC	2 cut(s)	118, 187
EheI	GGCGCC	2 cut(s)	118, 187
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	208, 325, 441
FaiI	YATR	5 cut(s)	206, 323, 350, 411, 439
FatI	CATG	3 cut(s)	204, 321, 437
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	2 cut(s)	281, 339
GlaI	GCGC	6 cut(s)	118, 187, 268, 301, 314, 343
GluI	GCNGC	1 cut(s)	353
HaeII	RGCGCY	3 cut(s)	120, 189, 345
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	6 cut(s)	92, 111, 240, 331, 489, 511
HhaI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
Hin1I	GRCGYC	2 cut(s)	117, 186
Hin1II	CATG	3 cut(s)	208, 325, 441
Hin6I	GCGC	6 cut(s)	117, 186, 267, 300, 313, 342
HinP1I	GCGC	6 cut(s)	117, 186, 267, 300, 313, 342
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	2 cut(s)	86, 216
HpaII	CCGG	6 cut(s)	92, 111, 240, 331, 489, 511
HphI	GGTGA	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	21, 389
Hpy188III	TCNNGA	6 cut(s)	69, 100, 175, 220, 240, 289
Hpy99I	CGWCG	2 cut(s)	176, 194
HpyAV	CCTTC	4 cut(s)	7, 178, 217, 295
HpyCH4III	ACNGT	3 cut(s)	64, 233, 500
HpyCH4IV	ACGT	2 cut(s)	129, 271
HpyCH4V	TGCA	2 cut(s)	441, 457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 275, 358, 367, 454
HpySE526I	ACGT	2 cut(s)	129, 271
Hsp92I	GRCGYC	2 cut(s)	117, 186
Hsp92II	CATG	3 cut(s)	208, 325, 441
HspAI	GCGC	6 cut(s)	117, 186, 267, 300, 313, 342
KasI	GGCGCC	2 cut(s)	116, 185
Kpn2I	TCCGGA	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
LguI	GCTCTTC	1 cut(s)	360
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	3 cut(s)	30, 258, 444
MaeI	CTAG	2 cut(s)	281, 339
MaeII	ACGT	2 cut(s)	129, 271
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	6 cut(s)	47, 137, 386, 391, 415, 445
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	1 cut(s)	373
Mly113I	GGCGCC	2 cut(s)	117, 186
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	5 cut(s)	175, 496, 507, 510, 516
MroI	TCCGGA	1 cut(s)	239
MspI	CCGG	6 cut(s)	92, 111, 240, 331, 489, 511
MspR9I	CCNGG	2 cut(s)	92, 111
MvnI	CGCG	4 cut(s)	140, 300, 315, 524
MwoI	GCNNNNNNNGC	5 cut(s)	131, 275, 358, 367, 454
NarI	GGCGCC	2 cut(s)	117, 186
NciI	CCSGG	2 cut(s)	92, 111
NdeII	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
NlaIII	CATG	3 cut(s)	208, 325, 441
NlaIV	GGNNCC	5 cut(s)	118, 187, 335, 435, 462
NmeAIII	GCCGAG	2 cut(s)	127, 162
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 189
PfeI	GAWTC	2 cut(s)	86, 216
PkrI	GCNGC	1 cut(s)	354
Ple19I	CGATCG	1 cut(s)	138
PluTI	GGCGCC	2 cut(s)	120, 189
Ppu21I	YACGTR	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	372
PspN4I	GGNNCC	5 cut(s)	118, 187, 335, 435, 462
PspPI	GGNCC	2 cut(s)	259, 503
PsuI	RGATCY	1 cut(s)	389
PvuI	CGATCG	1 cut(s)	138
RgaI	GCGATCGC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	6 cut(s)	45, 135, 384, 389, 413, 443
Sau96I	GGNCC	2 cut(s)	259, 503
ScrFI	CCNGG	2 cut(s)	92, 111
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	132, 183, 274, 372, 384, 425, 462, 488
SfaAI	GCGATCGC	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	30, 258, 444
SfoI	GGCGCC	2 cut(s)	118, 187
SgfI	GCGATCGC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	4 cut(s)	123, 140, 276, 393
SspDI	GGCGCC	2 cut(s)	116, 185
SspMI	CTAG	2 cut(s)	281, 339
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	90, 109
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	64, 233, 500
TaiI	ACGT	2 cut(s)	132, 274
TaqI	TCGA	2 cut(s)	48, 378
TasI	AATT	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	86, 216
TscAI	CASTG	2 cut(s)	84, 503
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	84, 503
VpaK11BI	GGWCC	1 cut(s)	259
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	2 cut(s)	281, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.