Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

57009715 .. 57010991

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTTTGAGATTGGGATTCGGATTGCGTTTATGGTGTGGTTCCAATGGAGGAATCCATGGACTTTCGGGTGAAAACCCGCTCCCAGCTTTCTTGAAGGCCCCCGGTGGCGCCCCCGCCAACGTGGCAATCGCTGTGGCTCGGCACGGCGGGAACTCCTCTTTCGTCGGGAAGATTGGTGACGACGAGTTCGGGCAAATGCTCGCTGGAATCTTGAAAGAGAACGGTGTCTCCGGGCAGGGCATCCTGTTCAACCAAAACGCACGCACCGCTCTGGCCTTTGTCACCCTGCACGCTGATGGAGAACTCATGTTTTACCGGAACCCTAGCGCCGATATGCTGCTCAAGCCCGAAGAGCTCAATTTGGAGCTGATCAGATGCGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATCGTTGAGCCATGCAGGTCGGCACATCTGAAGGCAATGGAGGTCGCAAAAGATGCCGGTGCCTTACTTTCCTACGACCCGAACCTCCGACTACCATTGTGGCCTTCACCTGAGAAGGCACGCGAACAAATAATGAGTATATGGGAAAAGGCAGAAGTGATTAAGCTCCTCCTTGTCACTCTTGGTGAAAAGGGTTGCAGATACTACACTAAGAATTTCCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTCGCAAAGATTGTTAATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

258

Amino Acids

27.78

Weight (kDa)

6.32

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	30 - 193	1.1e-31	pfkB family carbohydrate kinase
PfkB	PF00294	189 - 246	1.5e-15	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccB1I	GGYRCC	2 cut(s)	110, 473
AccBSI	CCGCTC	2 cut(s)	82, 272
AccII	CGCG	1 cut(s)	537
AciI	CCGC	5 cut(s)	80, 117, 150, 270, 665
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	768
AgsI	TTSAA	3 cut(s)	97, 217, 253
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	6 cut(s)	89, 358, 370, 411, 580, 650
AluI	AGCT	6 cut(s)	89, 358, 370, 411, 580, 650
Alw21I	GWGCWC	2 cut(s)	360, 706
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	3 cut(s)	99, 276, 515
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	628
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	3 cut(s)	113, 332, 383
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	105, 235
AsuHPI	GGTGA	6 cut(s)	83, 191, 277, 513, 611, 698
BanI	GGYRCC	2 cut(s)	110, 473
BanII	GRGCYC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	360, 706
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	163
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	105, 235
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	2 cut(s)	114, 333
BfuAI	ACCTGC	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	2 cut(s)	105, 235
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	5 cut(s)	43, 102, 112, 323, 475
BmrFI	CCNGG	2 cut(s)	105, 235
BmsI	GCATC	3 cut(s)	252, 368, 457
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	105, 235
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	58, 103, 634
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	58, 103, 634
BseGI	GGATG	2 cut(s)	243, 644
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	2 cut(s)	148, 572
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	3 cut(s)	101, 278, 517
BshNI	GGYRCC	2 cut(s)	110, 473
BsiHKAI	GWGCWC	2 cut(s)	360, 706
BsiSI	CCGG	4 cut(s)	105, 234, 319, 471
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	101, 278, 517
Bsp1286I	GDGCHC	2 cut(s)	360, 706
Bsp143I	GATC	3 cut(s)	372, 401, 414
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	5 cut(s)	80, 117, 150, 270, 665
BspANI	GGCC	3 cut(s)	101, 278, 517
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	5 cut(s)	43, 102, 112, 323, 475
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	348
BspT107I	GGYRCC	2 cut(s)	110, 473
BsrBI	CCGCTC	2 cut(s)	82, 272
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	58, 103, 634
BssMI	GATC	3 cut(s)	372, 401, 414
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	5 cut(s)	204, 265, 294, 535, 711
BstDEI	CTNAG	2 cut(s)	525, 624
BstDSI	CCRYGG	2 cut(s)	58, 634
BstF5I	GGATG	2 cut(s)	243, 644
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	2 cut(s)	114, 333
BstHHI	GCGC	3 cut(s)	113, 332, 383
BstKTI	GATC	3 cut(s)	375, 404, 417
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	372, 401, 414
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 269, 346, 355, 467, 710
BstSCI	CCNGG	2 cut(s)	103, 233
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	101, 278, 517
BtgI	CCRYGG	2 cut(s)	58, 634
BtsCI	GGATG	2 cut(s)	243, 644
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	5 cut(s)	204, 265, 294, 535, 711
CfoI	GCGC	3 cut(s)	113, 332, 383
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	4 cut(s)	59, 310, 426, 656
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	525, 624
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	3 cut(s)	374, 403, 416
DpnII	GATC	3 cut(s)	372, 401, 414
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	4 cut(s)	62, 313, 429, 659
FaiI	YATR	9 cut(s)	34, 60, 311, 338, 399, 427, 554, 556, 657
FatI	CATG	4 cut(s)	58, 309, 425, 655
FauI	CCCGC	3 cut(s)	87, 124, 143
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	230, 651
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	3 cut(s)	112, 331, 382
GluI	GCNGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	2 cut(s)	114, 333
HaeIII	GGCC	3 cut(s)	101, 278, 517
HapII	CCGG	4 cut(s)	105, 234, 319, 471
HhaI	GCGC	3 cut(s)	113, 332, 383
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	62, 313, 429, 659
Hin6I	GCGC	3 cut(s)	111, 330, 381
HinP1I	GCGC	3 cut(s)	111, 330, 381
HindIII	AAGCTT	2 cut(s)	409, 648
HinfI	GANTC	4 cut(s)	18, 54, 210, 689
HpaII	CCGG	4 cut(s)	105, 234, 319, 471
HphI	GGTGA	6 cut(s)	83, 191, 277, 513, 611, 698
Hpy188I	TCNGA	4 cut(s)	23, 377, 444, 503
Hpy188III	TCNNGA	4 cut(s)	94, 169, 214, 740
Hpy99I	CGWCG	2 cut(s)	170, 188
HpyAV	CCTTC	4 cut(s)	91, 439, 523, 528
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	292, 429, 612
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 269, 346, 355, 467, 710
HpyF3I	CTNAG	2 cut(s)	525, 624
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	62, 313, 429, 659
HspAI	GCGC	3 cut(s)	111, 330, 381
KasI	GGCGCC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	372, 401, 414
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	3 cut(s)	87, 367, 585
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	3 cut(s)	252, 368, 457
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	4 cut(s)	179, 283, 589, 658
MalI	GATC	3 cut(s)	374, 403, 416
MbiI	CCGCTC	2 cut(s)	82, 272
MboI	GATC	3 cut(s)	372, 401, 414
MboII	GAAGA	2 cut(s)	184, 365
MhlI	GDGCHC	2 cut(s)	360, 706
MluCI	AATT	2 cut(s)	361, 628
Mly113I	GGCGCC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	6 cut(s)	44, 169, 448, 509, 593, 753
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	576, 723
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	4 cut(s)	105, 234, 319, 471
MspR9I	CCNGG	2 cut(s)	105, 235
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	6 cut(s)	125, 269, 346, 355, 467, 710
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	2 cut(s)	105, 235
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	372, 401, 414
NlaIII	CATG	4 cut(s)	62, 313, 429, 659
NlaIV	GGNNCC	5 cut(s)	43, 102, 112, 323, 475
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	179, 283, 589
PciSI	GCTCTTC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	18, 54, 210, 689
PkrI	GCNGC	1 cut(s)	342
PluTI	GGCGCC	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	5 cut(s)	43, 102, 112, 323, 475
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	576, 723
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	372, 401, 414
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	768
ScrFI	CCNGG	2 cut(s)	105, 235
SduI	GDGCHC	2 cut(s)	360, 706
SfaNI	GCATC	3 cut(s)	252, 368, 457
SfoI	GGCGCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	361, 628
SsiI	CCGC	5 cut(s)	80, 117, 150, 270, 665
SspDI	GGCGCC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	103, 233
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	126
TasI	AATT	2 cut(s)	361, 628
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	4 cut(s)	18, 54, 210, 689
Tru1I	TTAA	2 cut(s)	576, 723
Tru9I	TTAA	2 cut(s)	576, 723
TseFI	GTSAC	3 cut(s)	179, 283, 589
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	3 cut(s)	179, 283, 589
TspDTI	ATGAA	2 cut(s)	644, 681
TspGWI	ACGGA	1 cut(s)	623
XapI	RAATTY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.