pycom04g03730

Belongs to the carbohydrate kinase PfkB family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
3334968 .. 3337819
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03730.3

Sequence Viewer

Length: 990 bp
ATGGCTAACAATGGCGTACGGCAGACCGGAAAGGGTATGATCGTGAGTTTCGGCGAGATGCTGATCGACTTCGTCCCCACCGAATCGGGCGTTTCTCTTGCCGAAGCTCCTGGCTTCCTCAAAGCCCCCGGCGGGGCCCCCGCCAACGTGGCGATCGCCGTGGCTCGCCTCGGCGGAAAGGCCGCGTTCGTCGGCAAACTCGGCGACGACGAGTTCGGCCACATGCTCGCCGGCATCCTGAAGCAATACGGCGTCACTGGAGATGGCATCTCGTTCGATCAGGGCGCCCGCACCGCCTTGGCCTTCGTGACCCTACGCGCCGACGGTGAACGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGATATGCTGCTGAAGCCCGACGAGCTCAACATCGAGCTCATCAAATCCGCCAAAGTGTTCCACTATGGATCCATTAGCTTGATCGTGGAGCCGTGCAGATCGGCACATCTGAAGGCAATGGAGGTGGCTAAAGAAGCAGGTGCATTGCTCTCCTACGATCCGAACCTCCGGGAGCTGCTGTGGCCGTCGCGGGAAGAGGCAAAGAAGCAGATAATGAGCATATGGGATAAGGCCGATTTGATCAAGGTGAGTGATGTGGAGCTGGAGTTCCTTACAGGGAACCCCAACATTGATGATGCCAATGCCATGACTCTGTGGAGAGATAGCTTGAAGCTCCTCCTTGTCACTCTTGGTGAGAAGGGTTGCAGATACTACACCAAGAATTTCCGTGGAGTGGTGGAATCCTTCGAGGTCAAAGCCGTAGACACCACCGGTGCCGGTGATTCGTTTGTCGGTGCTCTCCTTGCGAAGATTGTCGATGATCACTCCATTCTTGAAGACGAGAAGAGGTTGAGGGAGGTACTTAAATTTGCAAATGCATGCGGAGCGATTACAACAACCAAGAAGGGAGCTATCCCCGCACTTCCCACCGAGTCTGAAGCCCTCACCCTCTTCAAAGAAAAATAG

Protein Analysis

330

Amino Acids

35.62

Weight (kDa)

5.46

Isoelectric Point (pI)

24.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 491
Acc36I ACCTGC 1 cut(s) 491
AccB1I GGYRCC 2 cut(s) 284, 797
AccI GTMKAC 1 cut(s) 786
AccII CGCG 3 cut(s) 185, 318, 553
AclWI GGATC 3 cut(s) 426, 439, 515
AcoI YGGCCR 2 cut(s) 217, 545
AcsI RAATTY 2 cut(s) 745, 890
AcuI CTGAAG 4 cut(s) 260, 395, 494, 981
AcyI GRCGYC 2 cut(s) 252, 285
AfaI GTAC 2 cut(s) 18, 885
AfiI CCNNNNNNNGG 3 cut(s) 132, 133, 757
AgeI ACCGGT 1 cut(s) 794
AgsI TTSAA 3 cut(s) 694, 860, 979
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 614, 646
AluBI AGCT 9 cut(s) 107, 388, 400, 441, 538, 625, 690, 697, 935
AluI AGCT 9 cut(s) 107, 388, 400, 441, 538, 625, 690, 697, 935
Alw21I GWGCWC 3 cut(s) 390, 402, 823
AlwI GGATC 3 cut(s) 426, 439, 515
AoxI GGCC 6 cut(s) 135, 180, 217, 300, 545, 594
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 370, 538
ApoI RAATTY 2 cut(s) 745, 890
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiGI ACCGGT 1 cut(s) 794
AsiSI GCGATCGC 1 cut(s) 156
AspLEI GCGC 3 cut(s) 287, 320, 362
AspS9I GGNCC 2 cut(s) 135, 136
AsuC2I CCSGG 2 cut(s) 129, 533
AsuHPI GGTGA 5 cut(s) 338, 622, 728, 815, 961
BaeGI GKGCMC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 431
BanI GGYRCC 2 cut(s) 284, 797
BanII GRGCYC 3 cut(s) 139, 390, 402
BbsI GAAGAC 1 cut(s) 867
Bbv12I GWGCWC 3 cut(s) 390, 402, 823
BbvI GCAGC 2 cut(s) 357, 525
BccI CCATC 1 cut(s) 257
BceAI ACGGC 6 cut(s) 35, 143, 265, 439, 532, 767
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 2 cut(s) 603, 844
BcnI CCSGG 2 cut(s) 129, 533
BfaI CTAG 1 cut(s) 357
BfoI RGCGCY 2 cut(s) 288, 363
BfuAI ACCTGC 1 cut(s) 491
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 3 cut(s) 183, 371, 539
BlsI GCNGC 3 cut(s) 184, 372, 540
Bme1390I CCNGG 3 cut(s) 111, 129, 533
BmgT120I GGNCC 2 cut(s) 135, 136
BmiI GGNNCC 9 cut(s) 136, 137, 138, 286, 353, 433, 453, 644, 799
BmrFI CCNGG 3 cut(s) 111, 129, 533
BmsI GCATC 4 cut(s) 48, 243, 276, 649
BpiI GAAGAC 1 cut(s) 867
BpmI CTGGAG 2 cut(s) 279, 647
BpuMI CCSGG 2 cut(s) 129, 533
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 2 cut(s) 252, 285
BsaJI CCNNGG 5 cut(s) 127, 159, 169, 297, 751
BsaWI WCCGGW 3 cut(s) 26, 348, 794
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 614, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 133, 757
Bse118I RCCGGY 3 cut(s) 230, 794, 800
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 486, 506
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 5 cut(s) 127, 159, 169, 297, 751
BseGI GGATG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 132, 133, 757
BseMI GCAATG 2 cut(s) 486, 506
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 2 cut(s) 357, 525
BsgI GTGCAG 1 cut(s) 478
Bsh1236I CGCG 3 cut(s) 185, 318, 553
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
BshNI GGYRCC 2 cut(s) 284, 797
BshTI ACCGGT 1 cut(s) 794
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 390, 402, 823
BsiSI CCGG 7 cut(s) 27, 129, 231, 349, 532, 795, 801
BsiWI CGTACG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 132, 133, 757
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 4 cut(s) 139, 390, 402, 823
BspANI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
BspFNI CGCG 3 cut(s) 185, 318, 553
BspLI GGNNCC 9 cut(s) 136, 137, 138, 286, 353, 433, 453, 644, 799
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 3 cut(s) 426, 439, 515
BspT107I GGYRCC 2 cut(s) 284, 797
BsrDI GCAATG 2 cut(s) 486, 506
BsrFI RCCGGY 3 cut(s) 230, 794, 800
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 3 cut(s) 230, 794, 800
BssECI CCNNGG 5 cut(s) 127, 159, 169, 297, 751
BssNI GRCGYC 2 cut(s) 252, 285
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 3 cut(s) 552, 863, 980
BstACI GRCGYC 2 cut(s) 252, 285
BstC8I GCNNGC 5 cut(s) 166, 228, 232, 289, 904
BstDSI CCRYGG 2 cut(s) 159, 751
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 3 cut(s) 185, 318, 553
BstH2I RGCGCY 2 cut(s) 288, 363
BstHHI GCGC 3 cut(s) 287, 320, 362
BstMCI CGRYCG 1 cut(s) 156
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 226, 906
BstSCI CCNGG 3 cut(s) 109, 127, 531
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 3 cut(s) 185, 318, 553
BstV1I GCAGC 2 cut(s) 357, 525
BstV2I GAAGAC 1 cut(s) 867
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
BtgI CCRYGG 2 cut(s) 159, 751
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 5 cut(s) 166, 228, 232, 289, 904
CfoI GCGC 3 cut(s) 287, 320, 362
Cfr10I RCCGGY 3 cut(s) 230, 794, 800
Cfr13I GGNCC 2 cut(s) 135, 136
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 17, 884
CspAI ACCGGT 1 cut(s) 794
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 4 cut(s) 223, 340, 670, 903
CviQI GTAC 2 cut(s) 17, 884
DinI GGCGCC 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 217, 545
Eam1104I CTCTTC 3 cut(s) 552, 863, 980
EarI CTCTTC 3 cut(s) 552, 863, 980
EciI GGCGGA 2 cut(s) 189, 400
Ecl136II GAGCTC 2 cut(s) 388, 400
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 3 cut(s) 139, 390, 402
Eco53kI GAGCTC 2 cut(s) 388, 400
Eco57I CTGAAG 4 cut(s) 260, 395, 494, 981
EcoICRI GAGCTC 2 cut(s) 388, 400
EcoO109I RGGNCCY 2 cut(s) 135, 136
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 3 cut(s) 139, 390, 402
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 4 cut(s) 226, 343, 673, 906
FaiI YATR 9 cut(s) 38, 224, 341, 368, 429, 584, 586, 671, 904
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 222, 339, 669, 902
FauI CCCGC 5 cut(s) 125, 148, 296, 546, 949
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 2 cut(s) 603, 844
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 3 cut(s) 183, 371, 539
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 3 cut(s) 139, 390, 402
Fsp4HI GCNGC 3 cut(s) 183, 371, 539
FspBI CTAG 1 cut(s) 357
GlaI GCGC 3 cut(s) 286, 319, 361
GluI GCNGC 3 cut(s) 183, 371, 539
GsuI CTGGAG 2 cut(s) 279, 647
HaeII RGCGCY 2 cut(s) 288, 363
HaeIII GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
HapII CCGG 7 cut(s) 27, 129, 231, 349, 532, 795, 801
HgaI GACGC 1 cut(s) 241
HhaI GCGC 3 cut(s) 287, 320, 362
Hin1I GRCGYC 2 cut(s) 252, 285
Hin1II CATG 4 cut(s) 226, 343, 673, 906
Hin6I GCGC 3 cut(s) 285, 318, 360
HinP1I GCGC 3 cut(s) 285, 318, 360
HinfI GANTC 5 cut(s) 83, 673, 764, 806, 956
HpaII CCGG 7 cut(s) 27, 129, 231, 349, 532, 795, 801
HphI GGTGA 5 cut(s) 338, 622, 728, 815, 961
Hpy166II GTNNAC 2 cut(s) 329, 787
Hpy188I TCNGA 3 cut(s) 474, 525, 961
Hpy188III TCNNGA 4 cut(s) 43, 238, 307, 857
Hpy8I GTNNAC 2 cut(s) 329, 787
Hpy99I CGWCG 6 cut(s) 194, 209, 212, 326, 386, 553
HpyAV CCTTC 5 cut(s) 313, 469, 715, 778, 922
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 147, 331
HpyCH4V TGCA 5 cut(s) 459, 506, 729, 896, 902
HpySE526I ACGT 2 cut(s) 147, 331
Hsp92I GRCGYC 2 cut(s) 252, 285
Hsp92II CATG 4 cut(s) 226, 343, 673, 906
HspAI GCGC 3 cut(s) 285, 318, 360
KasI GGCGCC 1 cut(s) 284
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Ksp22I TGATCA 2 cut(s) 603, 844
LmnI GCTCC 7 cut(s) 112, 451, 535, 622, 702, 908, 932
Lsp1109I GCAGC 2 cut(s) 357, 525
LweI GCATC 4 cut(s) 48, 243, 276, 649
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 147, 331
MaeIII GTNAC 3 cut(s) 253, 307, 706
MboII GAAGA 5 cut(s) 569, 844, 872, 880, 967
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 4 cut(s) 139, 390, 402, 823
MluCI AATT 2 cut(s) 745, 890
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 2 cut(s) 667, 965
Mph1103I ATGCAT 1 cut(s) 904
MroNI GCCGGC 1 cut(s) 230
MseI TTAA 1 cut(s) 888
MspI CCGG 7 cut(s) 27, 129, 231, 349, 532, 795, 801
MspR9I CCNGG 3 cut(s) 111, 129, 533
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 3 cut(s) 185, 318, 553
NaeI GCCGGC 1 cut(s) 232
NarI GGCGCC 1 cut(s) 285
NciI CCSGG 2 cut(s) 129, 533
NdeI CATATG 1 cut(s) 584
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 4 cut(s) 226, 343, 673, 906
NlaIV GGNNCC 9 cut(s) 136, 137, 138, 286, 353, 433, 453, 644, 799
NmeAIII GCCGAG 2 cut(s) 150, 180
NmuCI GTSAC 3 cut(s) 253, 307, 706
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 2 cut(s) 226, 906
PaeI GCATGC 1 cut(s) 906
PaqCI CACCTGC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 207
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 83, 764, 806
Pfl23II CGTACG 1 cut(s) 16
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 3 cut(s) 184, 372, 540
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 2 cut(s) 667, 964
PluTI GGCGCC 1 cut(s) 288
PpsI GAGTC 2 cut(s) 667, 964
Psp124BI GAGCTC 2 cut(s) 390, 402
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 16
PspN4I GGNNCC 9 cut(s) 136, 137, 138, 286, 353, 433, 453, 644, 799
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 135, 136
PsuI RGATCY 1 cut(s) 431
PsyI GACNNNGTC 1 cut(s) 71
PvuI CGATCG 1 cut(s) 156
RgaI GCGATCGC 1 cut(s) 156
RsaI GTAC 2 cut(s) 18, 885
RsaNI GTAC 2 cut(s) 17, 884
SacI GAGCTC 2 cut(s) 390, 402
SaqAI TTAA 1 cut(s) 888
SatI GCNGC 3 cut(s) 183, 371, 539
Sau96I GGNCC 2 cut(s) 135, 136
SchI GAGTC 2 cut(s) 667, 965
ScrFI CCNGG 3 cut(s) 111, 129, 533
SduI GDGCHC 4 cut(s) 139, 390, 402, 823
SfaAI GCGATCGC 1 cut(s) 156
SfaNI GCATC 4 cut(s) 48, 243, 276, 649
SfoI GGCGCC 1 cut(s) 286
SgfI GCGATCGC 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 794
SphI GCATGC 1 cut(s) 906
Sse9I AATT 2 cut(s) 745, 890
SspDI GGCGCC 1 cut(s) 284
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 2 cut(s) 390, 402
StyD4I CCNGG 3 cut(s) 109, 127, 531
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 2 cut(s) 150, 334
TaqI TCGA 5 cut(s) 66, 276, 396, 771, 840
TasI AATT 2 cut(s) 745, 890
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 3 cut(s) 83, 764, 806
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 3 cut(s) 253, 307, 706
TseI GCWGC 2 cut(s) 370, 538
Tsp45I GTSAC 3 cut(s) 253, 307, 706
TspDTI ATGAA 1 cut(s) 328
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 71
XapI RAATTY 2 cut(s) 745, 890
XceI RCATGY 2 cut(s) 226, 906
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.