Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

34556577 .. 34557548

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGATGAGAAGGGTCTAATCGTGAGTTTCGGGGAGATGCTGATCGACTTCGTGCCCACCGTTTCGGGTGTTTCGCTAGCAGAAGCCCCGGCTTTCTTGAAAGCCCCAGGTGGCGCCCCCGCCAACGTGGCGATCGCTGTGGCTCGGCTCGGCGGCAACTCCTCCTTCGTCGGAAAGCTCGGCGCCGACGAGTTCGGGCACATGCTCGCTGGAATCTTGAAGGACAATGGTGTCTCCGGGCAGGGCATCTTGTTCGACCAAGGCGCACGCACCGCTCTGGCCTTCGTAACCCTACGCGCTGACGGAGAGCGCGAGTTCATGTTCTACCGAAACCCTAGCGCTGATATGCTGCTCAAGCCCGAAGAGCTCAATTTCGAGCTGATCAGATCAGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATTGTGGAACCATGTAGGTCGGCACATCTAAAGGCAATGGAGGTCGCTAAAGATGCTGGTGCCTTGCTTTCCTACGACCCGAACCTCCGGCTACCACTGTGGCCCTCACCGGAGGAGGCACGCGAGCAGATAATGAGTATATGGGAAAAGGCTGAAGTCATCAAGGTTAGTGATGTGGAGCTTGAGTTTCTCACCGGAAATCCCAACATTGATGATGAATCAGCCATGACTCTGTGGCACCTCAACTTGAAGCTCCTCCTCGTTACTCTTGGTGAAAAGGGTTGCAGATACTACACCAAGAATTTTCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGAGCTGGTGATTCATTTGTGGGTGCTCTGCTCGCAAAGATTGTTGATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTTGCAAATGCATGTGGAGCAATAACAACTACTAAGAAGGGAGCAATTCCTGCACTCCCCACTGAGTCTGAGGTCCTCGCCTTAATCAAAGGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

324

Amino Acids

34.76

Weight (kDa)

4.99

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	7 - 312	3.3e-74	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccB1I	GGYRCC	4 cut(s)	116, 185, 485, 663
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	3 cut(s)	300, 315, 549
AciI	CCGC	4 cut(s)	123, 156, 276, 764
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	727, 872
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	2 cut(s)	117, 186
AfaI	GTAC	1 cut(s)	867
AfeI	AGCGCT	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	103, 223, 676
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	8 cut(s)	181, 370, 382, 423, 607, 679, 749, 782
AluI	AGCT	8 cut(s)	181, 370, 382, 423, 607, 679, 749, 782
Alw21I	GWGCWC	2 cut(s)	372, 805
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	421
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	2 cut(s)	282, 527
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	727, 872
AsiSI	GCGATCGC	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
AspS9I	GGNCC	2 cut(s)	528, 946
AsuC2I	CCSGG	2 cut(s)	92, 241
AsuHPI	GGTGA	4 cut(s)	525, 610, 710, 797
AsuNHI	GCTAGC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	946
BaeGI	GKGCMC	2 cut(s)	60, 204
BanI	GGYRCC	4 cut(s)	116, 185, 485, 663
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	372, 805
BbvI	GCAGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	92, 241
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	80, 339
BfoI	RGCGCY	3 cut(s)	120, 189, 345
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	157, 353
BlsI	GCNGC	2 cut(s)	158, 354
BmcAI	AGTACT	1 cut(s)	867
Bme1390I	CCNGG	3 cut(s)	92, 111, 241
Bme18I	GGWCC	1 cut(s)	946
BmgT120I	GGNCC	2 cut(s)	528, 946
BmiI	GGNNCC	5 cut(s)	118, 187, 435, 487, 665
BmrFI	CCNGG	3 cut(s)	92, 111, 241
BmsI	GCATC	3 cut(s)	30, 258, 469
BmtI	GCTAGC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	341, 629
BpuMI	CCSGG	2 cut(s)	92, 241
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	117, 186
BsaJI	CCNNGG	3 cut(s)	90, 109, 262
BsaWI	WCCGGW	2 cut(s)	535, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bse1I	ACTGG	1 cut(s)	781
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	90, 109, 262
BseGI	GGATG	1 cut(s)	743
BseJI	GATNNNNATC	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	927, 933
BseNI	ACTGG	1 cut(s)	781
BseRI	GAGGAG	4 cut(s)	154, 554, 671, 674
BseSI	GKGCMC	2 cut(s)	60, 204
BseXI	GCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	3 cut(s)	300, 315, 549
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	284, 529
BshNI	GGYRCC	4 cut(s)	116, 185, 485, 663
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	372, 805
BsiSI	CCGG	5 cut(s)	92, 240, 514, 536, 621
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	284, 529
Bsp1286I	GDGCHC	4 cut(s)	60, 204, 372, 805
Bsp143I	GATC	5 cut(s)	45, 135, 384, 389, 413
BspACI	CCGC	4 cut(s)	123, 156, 276, 764
BspANI	GGCC	2 cut(s)	284, 529
BspCNI	CTCAG	2 cut(s)	928, 934
BspFNI	CGCG	3 cut(s)	300, 315, 549
BspLI	GGNNCC	5 cut(s)	118, 187, 435, 487, 665
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	4 cut(s)	116, 185, 485, 663
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	3 cut(s)	90, 109, 262
BssMI	GATC	5 cut(s)	45, 135, 384, 389, 413
BssNI	GRCGYC	2 cut(s)	117, 186
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	64, 525
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	2 cut(s)	117, 186
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	6 cut(s)	81, 210, 271, 547, 551, 810
BstDEI	CTNAG	3 cut(s)	906, 936, 942
BstF5I	GGATG	1 cut(s)	743
BstFNI	CGCG	3 cut(s)	300, 315, 549
BstH2I	RGCGCY	3 cut(s)	120, 189, 345
BstHHI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
BstKTI	GATC	5 cut(s)	48, 138, 387, 392, 416
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	5 cut(s)	45, 135, 384, 389, 413
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 275, 358, 367, 479, 809, 890, 923
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	208, 888
BstSCI	CCNGG	3 cut(s)	90, 109, 239
BstSLI	GKGCMC	2 cut(s)	60, 204
BstUI	CGCG	3 cut(s)	300, 315, 549
BstV1I	GCAGC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	284, 529
BtsCI	GGATG	1 cut(s)	743
BtsIMutI	CAGTG	2 cut(s)	521, 933
Cac8I	GCNNGC	6 cut(s)	81, 210, 271, 547, 551, 810
CfoI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
Cfr13I	GGNCC	2 cut(s)	528, 946
Csp6I	GTAC	1 cut(s)	866
CviAII	CATG	6 cut(s)	205, 322, 438, 652, 755, 885
CviQI	GTAC	1 cut(s)	866
DdeI	CTNAG	3 cut(s)	906, 936, 942
DinI	GGCGCC	2 cut(s)	118, 187
DpnI	GATC	5 cut(s)	47, 137, 386, 391, 415
DpnII	GATC	5 cut(s)	45, 135, 384, 389, 413
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	946
Eco47III	AGCGCT	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	946
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	372
EgeI	GGCGCC	2 cut(s)	118, 187
EheI	GGCGCC	2 cut(s)	118, 187
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	6 cut(s)	208, 325, 441, 655, 758, 888
FatI	CATG	6 cut(s)	204, 321, 437, 651, 754, 884
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	157, 353
FokI	GGATG	1 cut(s)	750
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	157, 353
FspBI	CTAG	2 cut(s)	80, 339
GlaI	GCGC	6 cut(s)	118, 187, 268, 301, 314, 343
GluI	GCNGC	2 cut(s)	157, 353
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	3 cut(s)	120, 189, 345
HaeIII	GGCC	2 cut(s)	284, 529
HapII	CCGG	5 cut(s)	92, 240, 514, 536, 621
HhaI	GCGC	6 cut(s)	119, 188, 269, 302, 315, 344
Hin1I	GRCGYC	2 cut(s)	117, 186
Hin1II	CATG	6 cut(s)	208, 325, 441, 655, 758, 888
Hin6I	GCGC	6 cut(s)	117, 186, 267, 300, 313, 342
HinP1I	GCGC	6 cut(s)	117, 186, 267, 300, 313, 342
HindIII	AAGCTT	2 cut(s)	421, 747
HinfI	GANTC	5 cut(s)	216, 644, 655, 788, 938
HpaII	CCGG	5 cut(s)	92, 240, 514, 536, 621
HphI	GGTGA	4 cut(s)	525, 610, 710, 797
Hpy188I	TCNGA	3 cut(s)	176, 389, 943
Hpy188III	TCNNGA	4 cut(s)	25, 100, 220, 839
Hpy99I	CGWCG	2 cut(s)	176, 194
HpyAV	CCTTC	5 cut(s)	7, 178, 217, 295, 904
HpyCH4III	ACNGT	2 cut(s)	64, 525
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	711, 878, 884, 926
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 275, 358, 367, 479, 809, 890, 923
HpyF3I	CTNAG	3 cut(s)	906, 936, 942
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	117, 186
Hsp92II	CATG	6 cut(s)	208, 325, 441, 655, 758, 888
HspAI	GCGC	6 cut(s)	117, 186, 267, 300, 313, 342
KasI	GGCGCC	2 cut(s)	116, 185
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	45, 135, 384, 389, 413
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	5 cut(s)	604, 684, 779, 890, 914
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	3 cut(s)	30, 258, 469
MaeI	CTAG	2 cut(s)	80, 339
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	289, 688, 757
MalI	GATC	5 cut(s)	47, 137, 386, 391, 415
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	5 cut(s)	45, 135, 384, 389, 413
MboII	GAAGA	1 cut(s)	377
MhlI	GDGCHC	4 cut(s)	60, 204, 372, 805
MluCI	AATT	4 cut(s)	373, 727, 872, 918
Mly113I	GGCGCC	2 cut(s)	117, 186
MlyI	GAGTC	2 cut(s)	649, 947
MmeI	TCCRAC	1 cut(s)	154
Mph1103I	ATGCAT	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	1 cut(s)	956
MspI	CCGG	5 cut(s)	92, 240, 514, 536, 621
MspR9I	CCNGG	3 cut(s)	92, 111, 241
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	3 cut(s)	300, 315, 549
MwoI	GCNNNNNNNGC	8 cut(s)	131, 275, 358, 367, 479, 809, 890, 923
NarI	GGCGCC	2 cut(s)	117, 186
NciI	CCSGG	2 cut(s)	92, 241
NdeII	GATC	5 cut(s)	45, 135, 384, 389, 413
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	6 cut(s)	208, 325, 441, 655, 758, 888
NlaIV	GGNNCC	5 cut(s)	118, 187, 435, 487, 665
NmeAIII	GCCGAG	3 cut(s)	127, 132, 162
NsiI	ATGCAT	1 cut(s)	886
NspI	RCATGY	2 cut(s)	208, 888
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 189, 312
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	216, 644, 788
PkrI	GCNGC	2 cut(s)	158, 354
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	2 cut(s)	649, 946
PluTI	GGCGCC	2 cut(s)	120, 189
PpsI	GAGTC	2 cut(s)	649, 946
PpuMI	RGGWCCY	1 cut(s)	946
Psp124BI	GAGCTC	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	5 cut(s)	118, 187, 435, 487, 665
PspPI	GGNCC	2 cut(s)	528, 946
PspPPI	RGGWCCY	1 cut(s)	946
PvuI	CGATCG	1 cut(s)	138
RgaI	GCGATCGC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	867
RsaNI	GTAC	1 cut(s)	866
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	956
SatI	GCNGC	2 cut(s)	157, 353
Sau3AI	GATC	5 cut(s)	45, 135, 384, 389, 413
Sau96I	GGNCC	2 cut(s)	528, 946
ScaI	AGTACT	1 cut(s)	867
SchI	GAGTC	2 cut(s)	649, 947
ScrFI	CCNGG	3 cut(s)	92, 111, 241
SduI	GDGCHC	4 cut(s)	60, 204, 372, 805
SfaAI	GCGATCGC	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	30, 258, 469
SfoI	GGCGCC	2 cut(s)	118, 187
SgfI	GCGATCGC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	946
SmlI	CTYRAG	2 cut(s)	356, 608
SmoI	CTYRAG	2 cut(s)	356, 608
Sse9I	AATT	4 cut(s)	373, 727, 872, 918
SsiI	CCGC	4 cut(s)	123, 156, 276, 764
SspDI	GGCGCC	2 cut(s)	116, 185
SspMI	CTAG	2 cut(s)	80, 339
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	90, 109, 239
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	64, 525
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	48, 258, 378
TasI	AATT	4 cut(s)	373, 727, 872, 918
TatI	WGTACW	1 cut(s)	865
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	216, 644, 788
Tru1I	TTAA	1 cut(s)	956
Tru9I	TTAA	1 cut(s)	956
TscAI	CASTG	2 cut(s)	528, 940
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	310, 657, 743, 780
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	528, 940
VpaK11BI	GGWCC	1 cut(s)	946
XapI	RAATTY	2 cut(s)	727, 872
XceI	RCATGY	2 cut(s)	208, 888
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	80, 339
ZrmI	AGTACT	1 cut(s)	867
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.