Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

12669298 .. 12669453

Gene Structure 156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCTCGCTGGAATCTTGAAAGAGAACGGTGTCTCCGGGCAGGGCATCCTGTTCAACCAAAACGCACGCACCGCTCTGGCCTTTGTCACCCTGCGCGCTGATGGAGAACTCATGTTTCACCGGAACCCTATCGCCGATATGCTGCTCAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

51

Amino Acids

5.55

Weight (kDa)

8.36

Isoelectric Point (pI)

3.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	19, 55
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	96, 98
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	79, 110
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
BseGI	GGATG	1 cut(s)	45
BsePI	GCGCGC	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	36, 121
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	74
BssHII	GCGCGC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	6, 67, 96
BstF5I	GGATG	1 cut(s)	45
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	96, 98
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 148
BstSCI	CCNGG	1 cut(s)	35
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	45
Cac8I	GCNNGC	3 cut(s)	6, 67, 96
CfoI	GCGC	2 cut(s)	96, 98
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	2 cut(s)	80, 151
CviKI_1	RGCY	2 cut(s)	80, 151
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	113, 140
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	2 cut(s)	95, 97
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	36, 121
HhaI	GCGC	2 cut(s)	96, 98
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	2 cut(s)	94, 96
HinP1I	GCGC	2 cut(s)	94, 96
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	36, 121
HphI	GGTGA	2 cut(s)	79, 110
Hpy188III	TCNNGA	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 148
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	2 cut(s)	94, 96
LpnPI	CCDG	6 cut(s)	26, 49, 62, 62, 104, 134
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	85
MbiI	CCGCTC	1 cut(s)	74
MspI	CCGG	2 cut(s)	36, 121
MspR9I	CCNGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	71, 148
NciI	CCSGG	1 cut(s)	37
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	85
PauI	GCGCGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	125
PteI	GCGCGC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	37
SfaNI	GCATC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.