Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

14889686 .. 14890105

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTAATGACAAGGGTCTAATCGTCAGTTTCGGGGAGATGCTGATTGACTTCGTTCCCACAGTTTCAGGTGTTTCACTGGCCGAAGCTCCAGGGTTCTTGAATGCCCCCGGTGGCGCCCCAGCCAACGTGGCCATTGCTGTCTCTCGGCTCGGCGGCAACGCCTCCTTCGTTGGGAAGCTCGGTGACGACGAGTTCGGGCACATGCTGGCCGGAATCTTGAAGGAGAATAACGTCTCAGGAGAAGGCATCATGTTCGACCAAGGTGCACGCACCGCTCTGGCCTTTGTGACCCTACGCGCCGACGGAGAGCGCGAGTTCATGTTCTACAGGAACCCTAGCGCTGATATGCTGCTCATGCCCGAAGAGCTCAACTTGGAGCTGATTAAATCAGCTAGTGTTTCATTATGGATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

140

Amino Acids

14.72

Weight (kDa)

4.56

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	7 - 134	4.6e-29	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	2 cut(s)	300, 315
AciI	CCGC	2 cut(s)	156, 276
AclWI	GGATC	2 cut(s)	406, 419
AcoI	YGGCCR	3 cut(s)	81, 132, 210
AcyI	GRCGYC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	103, 223
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	5 cut(s)	89, 181, 370, 382, 395
AluI	AGCT	5 cut(s)	89, 181, 370, 382, 395
Alw21I	GWGCWC	2 cut(s)	271, 372
Alw26I	GTCTC	2 cut(s)	148, 241
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	406, 419
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	4 cut(s)	81, 132, 210, 282
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	4 cut(s)	119, 302, 315, 344
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	2 cut(s)	204, 271
BalI	TGGCCA	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	271, 372
BbvI	GCAGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	4 cut(s)	238, 248, 272, 282
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	148, 241
BfaI	CTAG	2 cut(s)	339, 396
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	2 cut(s)	120, 345
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	157, 353
BlsI	GCNGC	2 cut(s)	158, 354
Bme1390I	CCNGG	2 cut(s)	93, 111
BmiI	GGNNCC	3 cut(s)	118, 335, 413
BmrFI	CCNGG	2 cut(s)	93, 111
BmsI	GCATC	2 cut(s)	30, 258
BoxI	GACNNNNGTC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	92, 109, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	92, 109, 262
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	84
BseSI	GKGCMC	2 cut(s)	204, 271
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	2 cut(s)	300, 315
BshFI	GGCC	4 cut(s)	83, 134, 212, 284
BshNI	GGYRCC	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	271, 372
BsiSI	CCGG	2 cut(s)	111, 213
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	148, 241
BsmBI	CGTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	83, 134, 212, 284
Bsp1286I	GDGCHC	3 cut(s)	204, 271, 372
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	156, 276
BspANI	GGCC	4 cut(s)	83, 134, 212, 284
BspCNI	CTCAG	1 cut(s)	251
BspFNI	CGCG	2 cut(s)	300, 315
BspLI	GGNNCC	3 cut(s)	118, 335, 413
BspPI	GGATC	2 cut(s)	406, 419
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	92, 109, 262
BssMI	GATC	1 cut(s)	411
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	210, 271
BstDEI	CTNAG	1 cut(s)	238
BstFNI	CGCG	2 cut(s)	300, 315
BstH2I	RGCGCY	2 cut(s)	120, 345
BstHHI	GCGC	4 cut(s)	119, 302, 315, 344
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	2 cut(s)	148, 241
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 275, 358, 367
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	208
BstPAI	GACNNNNGTC	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	91, 109
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	2 cut(s)	204, 271
BstUI	CGCG	2 cut(s)	300, 315
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	83, 134, 212, 284
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	210, 271
CfoI	GCGC	4 cut(s)	119, 302, 315, 344
CviAII	CATG	4 cut(s)	205, 253, 322, 358
DdeI	CTNAG	1 cut(s)	238
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
EaeI	YGGCCR	3 cut(s)	81, 132, 210
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	372
Eco47III	AGCGCT	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	4 cut(s)	208, 256, 325, 361
FaiI	YATR	6 cut(s)	206, 254, 323, 350, 359, 409
FatI	CATG	4 cut(s)	204, 252, 321, 357
Fnu4HI	GCNGC	2 cut(s)	157, 353
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	157, 353
FspBI	CTAG	2 cut(s)	339, 396
GlaI	GCGC	4 cut(s)	118, 301, 314, 343
GluI	GCNGC	2 cut(s)	157, 353
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	2 cut(s)	120, 345
HaeIII	GGCC	4 cut(s)	83, 134, 212, 284
HapII	CCGG	2 cut(s)	111, 213
HhaI	GCGC	4 cut(s)	119, 302, 315, 344
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	208, 256, 325, 361
Hin6I	GCGC	4 cut(s)	117, 300, 313, 342
HinP1I	GCGC	4 cut(s)	117, 300, 313, 342
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	111, 213
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	100, 220, 240
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	2 cut(s)	194, 308
HpyAV	CCTTC	3 cut(s)	178, 217, 239
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	129, 234
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 275, 358, 367
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	2 cut(s)	129, 234
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	208, 256, 325, 361
HspAI	GCGC	4 cut(s)	117, 300, 313, 342
KasI	GGCGCC	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	411
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	94, 379
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	2 cut(s)	30, 258
MaeI	CTAG	2 cut(s)	339, 396
MaeII	ACGT	2 cut(s)	129, 234
MaeIII	GTNAC	2 cut(s)	185, 289
MalI	GATC	1 cut(s)	413
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	1 cut(s)	411
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	3 cut(s)	204, 271, 372
MlsI	TGGCCA	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	2 cut(s)	111, 213
MspR9I	CCNGG	2 cut(s)	93, 111
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	2 cut(s)	300, 315
MwoI	GCNNNNNNNGC	4 cut(s)	131, 275, 358, 367
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	4 cut(s)	208, 256, 325, 361
NlaIV	GGNNCC	3 cut(s)	118, 335, 413
NmeAIII	GCCGAG	2 cut(s)	127, 132
NmuCI	GTSAC	2 cut(s)	185, 289
NspI	RCATGY	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 189, 312
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	158, 354
PluTI	GGCGCC	1 cut(s)	120
PshAI	GACNNNNGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	118, 335, 413
PsuI	RGATCY	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	157, 353
Sau3AI	GATC	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	93, 111
SduI	GDGCHC	3 cut(s)	204, 271, 372
SetI	ASST	9 cut(s)	73, 91, 132, 183, 237, 268, 372, 384, 397
SfaNI	GCATC	2 cut(s)	30, 258
SfcI	CTRYAG	1 cut(s)	328
SfoI	GGCGCC	1 cut(s)	118
SsiI	CCGC	2 cut(s)	156, 276
SspDI	GGCGCC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	339, 396
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	91, 109
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	2 cut(s)	132, 237
TaqI	TCGA	1 cut(s)	258
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	185, 289
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	2 cut(s)	185, 289
TspDTI	ATGAA	2 cut(s)	310, 393
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	84
VneI	GTGCAC	1 cut(s)	267
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	2 cut(s)	339, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.