Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010033.1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

5520 .. 6135

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010033.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgccggtgccttactttcctacgacccgaacctccgactaccattgtgggccttcacctgagaaggcacgcgaacaaataataagtatatgggaaaaggcaggagtgattaagatcctccttgtcactcttggtgaaaagggttgcagatactacactaagaatttccgtggatgtgtggaagcttttcatgtaactgcggtagatactactggtgctggtgattcatttgtgggtgctctgctcgcaaagattgttaatgaccaatctgttcttgatgatgagcaaaggttaagggaagtactcaaattcgcaaatgcatgtggagcaataacaactactaagaagagagcaattcctgcactccccacagagtccgaactccgaagtcctcgccctaatcaaagaggcataatcaatcttttagtttttgttttttgtaatagcatagattctttttgcagttcatccatctttcgaggacttctgcatgtgtttttaaacttcattgcttttgatttgagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

175

Amino Acids

19.46

Weight (kDa)

8.78

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	163, 308
AfaI	GTAC	1 cut(s)	303
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	163, 308
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	48, 146, 233
BanI	GGYRCC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	1 cut(s)	479
BmcAI	AGTACT	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	179, 467
BseJI	GATNNNNATC	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	5
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	70, 246
BstDEI	CTNAG	3 cut(s)	60, 159, 342
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	179, 467
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 326, 359
BstNSI	RCATGY	2 cut(s)	324, 494
BstUI	CGCG	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	179, 467
Cac8I	GCNNGC	2 cut(s)	70, 246
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	3 cut(s)	191, 321, 491
CviJI	RGCY	2 cut(s)	52, 185
CviKI_1	RGCY	2 cut(s)	52, 185
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	60, 159, 342
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	3 cut(s)	194, 324, 494
FaiI	YATR	7 cut(s)	89, 91, 192, 322, 413, 449, 492
FatI	CATG	3 cut(s)	190, 320, 490
FokI	GGATG	2 cut(s)	186, 454
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	194, 324, 494
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	3 cut(s)	224, 374, 452
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	48, 146, 233
Hpy188I	TCNGA	3 cut(s)	37, 379, 386
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	58, 63
HpyCH4V	TGCA	5 cut(s)	147, 320, 362, 462, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 326, 359
HpyF3I	CTNAG	3 cut(s)	60, 159, 342
Hsp92II	CATG	3 cut(s)	194, 324, 494
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	6 cut(s)	18, 72, 87, 198, 204, 372
MaeIII	GTNAC	2 cut(s)	124, 193
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	163, 308, 354
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	43, 128, 401, 402, 473
Mph1103I	ATGCAT	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	4 cut(s)	111, 258, 293, 500
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	245, 326, 359
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	3 cut(s)	194, 324, 494
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	2 cut(s)	324, 494
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	224, 452
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	111, 258, 293, 500
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	4 cut(s)	35, 61, 187, 293
Sse9I	AATT	3 cut(s)	163, 308, 354
SsiI	CCGC	1 cut(s)	200
TaqI	TCGA	1 cut(s)	478
TasI	AATT	3 cut(s)	163, 308, 354
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	224, 452
Tru1I	TTAA	4 cut(s)	111, 258, 293, 500
Tru9I	TTAA	4 cut(s)	111, 258, 293, 500
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	179, 216, 456, 496
TspGWI	ACGGA	1 cut(s)	158
XapI	RAATTY	2 cut(s)	163, 308
XceI	RCATGY	2 cut(s)	324, 494
XmnI	GAANNNNTTC	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.