Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

1267675 .. 1269033

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCGCCTCCGTTGATCCTTTGGTCGTCGGCCGCGTGATCGGCGATGTGGTCGACATGTTTGTCCCGACTGTGAACATGTCTGTTTACTTTGGTTCAAAGCACGTCACCAATGGCTGTGACATCAAACCCTCCATCGCCGTTAGCCCTCCAAAAGTGACCTTCTCCGGTCACCCCGGCGAGCTTTACACCCTGGTCATGACTGATCCCGATGCTCCGAGTCCAAGTGAGCCTAGCATGCGAGAATGGGTTCATTGGATTATGGCTGATATCCCTGGAGGAACGAATCCTATTAGAGGAAAAGAGATACTGCCCTACGTCGGACCAAGGCCACCGGTGGGAATTCACCGTTATATTTTGGTGCTGTTTCAGCAGAAGATGCCTATGGGACTCGTGGATCAACCCCCGACTCGAGCCCATTTCAACACTCGCTATTTCGCAGCGCAGCTTGACCTAGGCCTGCCCGTGTCCACCGTGTATTTTAATTCACAGAAGGAGCCGGCCAACCGGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

172

Amino Acids

19.0

Weight (kDa)

8.76

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	47 - 150	2.9e-18	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	6, 34
AclWI	GGATC	3 cut(s)	11, 200, 405
AcoI	YGGCCR	3 cut(s)	3, 31, 501
AcsI	RAATTY	1 cut(s)	342
AfiI	CCNNNNNNNGG	4 cut(s)	296, 320, 338, 510
AflIII	ACRYGT	2 cut(s)	57, 78
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	99, 424
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	192, 274
AluBI	AGCT	2 cut(s)	184, 448
AluI	AGCT	2 cut(s)	184, 448
AlwI	GGATC	3 cut(s)	11, 200, 405
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	5 cut(s)	3, 31, 329, 457, 501
ApeKI	GCWGC	2 cut(s)	440, 445
ApoI	RAATTY	1 cut(s)	342
AsiGI	ACCGGT	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	3 cut(s)	100, 164, 338
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	323
AvrII	CCTAGG	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	452, 457
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	194, 276
BcnI	CCSGG	1 cut(s)	177
BfaI	CTAG	2 cut(s)	234, 455
BisI	GCNGC	4 cut(s)	6, 34, 441, 446
BlnI	CCTAGG	1 cut(s)	454
BlsI	GCNGC	4 cut(s)	7, 35, 442, 447
Bme1390I	CCNGG	3 cut(s)	177, 194, 276
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	411
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	3 cut(s)	177, 194, 276
BmsI	GCATC	2 cut(s)	202, 369
BpmI	CTGGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	5 cut(s)	175, 192, 274, 326, 454
BsaWI	WCCGGW	3 cut(s)	167, 334, 507
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 320, 338, 510
Bse118I	RCCGGY	2 cut(s)	334, 499
BseBI	CCWGG	2 cut(s)	194, 276
BseDI	CCNNGG	5 cut(s)	175, 192, 274, 326, 454
BseLI	CCNNNNNNNGG	4 cut(s)	296, 320, 338, 510
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	452, 457
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	5, 33, 331, 459, 503
BshTI	ACCGGT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	5 cut(s)	168, 177, 335, 500, 508
BslFI	GGGAC	2 cut(s)	50, 402
BslI	CCNNNNNNNGG	4 cut(s)	296, 320, 338, 510
BsmFI	GGGAC	2 cut(s)	50, 402
BsnI	GGCC	5 cut(s)	5, 33, 331, 459, 503
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	16, 39, 205, 397
BspACI	CCGC	2 cut(s)	6, 34
BspANI	GGCC	5 cut(s)	5, 33, 331, 459, 503
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	11, 200, 405
BsrFI	RCCGGY	2 cut(s)	334, 499
BssAI	RCCGGY	2 cut(s)	334, 499
BssECI	CCNNGG	5 cut(s)	175, 192, 274, 326, 454
BssMI	GATC	4 cut(s)	16, 39, 205, 397
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	326, 454
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	194, 276
Bst4CI	ACNGT	3 cut(s)	73, 350, 475
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	4 cut(s)	182, 239, 461, 501
BstEII	GGTNACC	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	4 cut(s)	19, 42, 208, 400
BstMBI	GATC	4 cut(s)	16, 39, 205, 397
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 238, 370, 379
BstNI	CCWGG	2 cut(s)	194, 276
BstNSI	RCATGY	3 cut(s)	61, 82, 241
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	175, 192, 274
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	452, 457
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	5 cut(s)	5, 33, 331, 459, 503
BtgZI	GCGATG	2 cut(s)	60, 121
BtrI	CACGTC	1 cut(s)	106
Cac8I	GCNNGC	4 cut(s)	182, 239, 461, 501
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	2 cut(s)	334, 499
Cfr13I	GGNCC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	4 cut(s)	58, 79, 199, 238
DpnI	GATC	4 cut(s)	18, 41, 207, 399
DpnII	GATC	4 cut(s)	16, 39, 205, 397
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	3 cut(s)	3, 31, 501
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	326, 454
Eco147I	AGGCCT	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	411
Eco91I	GGTNACC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	192, 274
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	326, 454
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	326, 454
FaeI	CATG	4 cut(s)	61, 82, 202, 241
FaiI	YATR	7 cut(s)	59, 80, 200, 239, 263, 354, 386
FaqI	GGGAC	2 cut(s)	50, 402
FatI	CATG	4 cut(s)	57, 78, 198, 237
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	6, 34, 441, 446
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	4 cut(s)	6, 34, 441, 446
FspBI	CTAG	2 cut(s)	234, 455
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	4 cut(s)	6, 34, 441, 446
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	5 cut(s)	5, 33, 331, 459, 503
HapII	CCGG	5 cut(s)	168, 177, 335, 500, 508
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	61, 82, 202, 241
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	220, 286, 390, 409
HpaII	CCGG	5 cut(s)	168, 177, 335, 500, 508
HphI	GGTGA	3 cut(s)	100, 164, 338
Hpy166II	GTNNAC	4 cut(s)	55, 76, 88, 471
Hpy188I	TCNGA	2 cut(s)	219, 323
Hpy188III	TCNNGA	3 cut(s)	67, 199, 209
Hpy8I	GTNNAC	4 cut(s)	55, 76, 88, 471
Hpy99I	CGWCG	2 cut(s)	32, 323
HpyAV	CCTTC	2 cut(s)	172, 487
HpyCH4III	ACNGT	3 cut(s)	73, 350, 475
HpyCH4IV	ACGT	2 cut(s)	105, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 238, 370, 379
HpySE526I	ACGT	2 cut(s)	105, 318
Hsp92II	CATG	4 cut(s)	61, 82, 202, 241
HspAI	GCGC	1 cut(s)	443
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	16, 39, 205, 397
LmnI	GCTCC	2 cut(s)	220, 496
LpnPI	CCDG	9 cut(s)	179, 181, 190, 206, 261, 288, 348, 473, 513
Lsp1109I	GCAGC	2 cut(s)	452, 457
LweI	GCATC	2 cut(s)	202, 369
MaeI	CTAG	2 cut(s)	234, 455
MaeII	ACGT	2 cut(s)	105, 318
MaeIII	GTNAC	4 cut(s)	106, 119, 157, 170
MalI	GATC	4 cut(s)	18, 41, 207, 399
MboI	GATC	4 cut(s)	16, 39, 205, 397
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	2 cut(s)	342, 484
MlyI	GAGTC	3 cut(s)	229, 384, 403
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	19, 142, 159, 272, 290, 504
MroNI	GCCGGC	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	483
MspI	CCGG	5 cut(s)	168, 177, 335, 500, 508
MspR9I	CCNGG	3 cut(s)	177, 194, 276
MvaI	CCWGG	2 cut(s)	194, 276
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	42, 238, 370, 379
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	16, 39, 205, 397
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	4 cut(s)	61, 82, 202, 241
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	4 cut(s)	106, 119, 157, 170
NspI	RCATGY	3 cut(s)	61, 82, 241
PaeI	GCATGC	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	411
PagI	TCATGA	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	459
PciI	ACATGT	2 cut(s)	57, 78
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	7, 35, 442, 447
PleI	GAGTC	3 cut(s)	228, 384, 403
PpsI	GAGTC	3 cut(s)	228, 384, 403
PscI	ACATGT	2 cut(s)	57, 78
Psp6I	CCWGG	2 cut(s)	192, 274
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	192, 274
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	323
PspXI	VCTCGAGB	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	6, 34, 441, 446
Sau3AI	GATC	4 cut(s)	16, 39, 205, 397
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	3 cut(s)	229, 384, 403
ScrFI	CCNGG	3 cut(s)	177, 194, 276
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	6 cut(s)	108, 164, 186, 321, 450, 456
SfaNI	GCATC	2 cut(s)	202, 369
Sfr274I	CTCGAG	1 cut(s)	411
SgrAI	CRCCGGYG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	342, 484
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	2 cut(s)	6, 34
SspMI	CTAG	2 cut(s)	234, 455
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	175, 192, 274
StyI	CCWWGG	2 cut(s)	326, 454
TaaI	ACNGT	3 cut(s)	73, 350, 475
TaiI	ACGT	2 cut(s)	108, 321
TaqI	TCGA	2 cut(s)	54, 412
TasI	AATT	2 cut(s)	342, 484
TauI	GCSGC	2 cut(s)	8, 36
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	4 cut(s)	106, 119, 157, 170
TseI	GCWGC	2 cut(s)	440, 445
Tsp45I	GTSAC	4 cut(s)	106, 119, 157, 170
TspDTI	ATGAA	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	3 cut(s)	61, 82, 241
XhoI	CTCGAG	1 cut(s)	411
XmaJI	CCTAGG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	234, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.