Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025697.1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

16584 .. 16908

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025697.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 325 bp

atggctaatgagaagggtctgatcgtgagtttcggggagatgctgatcgacttcgtccccaccgtttcgggcgtttcactggccgaagccccagctttcttgaaggcccccggtggcgcccccgccaacgtggcgatcgctgtggctcggctcggtggcaactcctccttcattgggaagctcggcgacgacgagttcgggcacatgctctccggaatcttgaaagagaacggtgtctccgggaagggcatcctgttcgaccaaaatgcacgcaccgctctggcattcgtgaccctacgcgccgacggagagcgcgagttcatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

108

Amino Acids

11.17

Weight (kDa)

4.99

Isoelectric Point (pI)

17.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	2 cut(s)	300, 315
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	2 cut(s)	123, 276
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	103, 223
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	95, 181
AluI	AGCT	2 cut(s)	95, 181
Alw26I	GTCTC	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	2 cut(s)	81, 105
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsiSI	GCGATCGC	1 cut(s)	138
AspLEI	GCGC	3 cut(s)	119, 302, 315
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	2 cut(s)	111, 241
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	116
BcgI	CGANNNNNNTGC	4 cut(s)	238, 248, 272, 282
BcnI	CCSGG	2 cut(s)	111, 241
BcoDI	GTCTC	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	111, 241
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	108, 118
BmrFI	CCNGG	2 cut(s)	111, 241
BmsI	GCATC	2 cut(s)	30, 258
BpuMI	CCSGG	2 cut(s)	111, 241
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 221, 224, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	2 cut(s)	300, 315
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	83, 107
BshNI	GGYRCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	111, 213, 240
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	83, 107
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	21, 45, 135
BspACI	CCGC	2 cut(s)	123, 276
BspANI	GGCC	2 cut(s)	83, 107
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	2 cut(s)	300, 315
BspLI	GGNNCC	2 cut(s)	108, 118
BspT107I	GGYRCC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	21, 45, 135
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	64, 233
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	2 cut(s)	300, 315
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	3 cut(s)	119, 302, 315
BstKTI	GATC	3 cut(s)	24, 48, 138
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	21, 45, 135
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 275
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	109, 239
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	2 cut(s)	300, 315
BsuRI	GGCC	2 cut(s)	83, 107
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	3 cut(s)	119, 302, 315
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	2 cut(s)	205, 322
CviJI	RGCY	8 cut(s)	5, 83, 89, 95, 107, 146, 151, 181
CviKI_1	RGCY	8 cut(s)	5, 83, 89, 95, 107, 146, 151, 181
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	3 cut(s)	23, 47, 137
DpnII	GATC	3 cut(s)	21, 45, 135
EaeI	YGGCCR	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	106
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
FaeI	CATG	2 cut(s)	208, 325
FaiI	YATR	2 cut(s)	206, 323
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	2 cut(s)	204, 321
FauI	CCCGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	236
GlaI	GCGC	3 cut(s)	118, 301, 314
GsaI	CCCAGC	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	83, 107
HapII	CCGG	3 cut(s)	111, 213, 240
HhaI	GCGC	3 cut(s)	119, 302, 315
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	208, 325
Hin6I	GCGC	3 cut(s)	117, 300, 313
HinP1I	GCGC	3 cut(s)	117, 300, 313
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	3 cut(s)	111, 213, 240
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	5 cut(s)	25, 100, 213, 220, 289
Hpy99I	CGWCG	3 cut(s)	191, 194, 308
HpyAV	CCTTC	4 cut(s)	7, 97, 178, 238
HpyCH4III	ACNGT	2 cut(s)	64, 233
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 275
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	208, 325
HspAI	GCGC	3 cut(s)	117, 300, 313
KasI	GGCGCC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	21, 45, 135
LpnPI	CCDG	7 cut(s)	65, 105, 124, 226, 253, 266, 266
LweI	GCATC	2 cut(s)	30, 258
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	23, 47, 137
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	3 cut(s)	21, 45, 135
MhlI	GDGCHC	1 cut(s)	204
Mly113I	GGCGCC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	175
MroI	TCCGGA	1 cut(s)	212
MspI	CCGG	3 cut(s)	111, 213, 240
MspR9I	CCNGG	2 cut(s)	111, 241
Mva1269I	GAATGC	1 cut(s)	284
MvnI	CGCG	2 cut(s)	300, 315
MwoI	GCNNNNNNNGC	2 cut(s)	131, 275
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	111, 241
NdeII	GATC	3 cut(s)	21, 45, 135
NlaIII	CATG	2 cut(s)	208, 325
NlaIV	GGNNCC	2 cut(s)	108, 118
NmeAIII	GCCGAG	2 cut(s)	127, 162
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 189, 312
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	216
PflFI	GACNNNGTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	239
Ple19I	CGATCG	1 cut(s)	138
PluTI	GGCGCC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	108, 118
PspPI	GGNCC	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	138
RgaI	GCGATCGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	21, 45, 135
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	111, 241
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	3 cut(s)	97, 132, 183
SfaAI	GCGATCGC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	30, 258
SfoI	GGCGCC	1 cut(s)	118
SgfI	GCGATCGC	1 cut(s)	138
SsiI	CCGC	2 cut(s)	123, 276
SspDI	GGCGCC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	109, 239
TaaI	ACNGT	2 cut(s)	64, 233
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	48, 258
TfiI	GAWTC	1 cut(s)	216
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	160, 310
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.