Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

32287496 .. 32288473

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACTAATGAGAAGGGTCTGATCGTGAGTTTCGGGGAGATGCTGATCGACTTTGTGCCAACCGTTTTCGGTGTTTCACTGGCTGAAGCTCCGGCTTTCTTGAAAGCCCCCAGTGGCCCCCCTACCAACGTGGCAATCGCAGTGGCTCGGCTCGGCGGCAACTCCTCATTTGTCGGGAAGCTTGGTGCCAATGATCGAGAGAATGGTGTCTCCAACCAGGGCATCTTGTTCGACCAAGGCGCACGCACTACTCTGGCCTTCGTGACCCTACGCGCCGATGGAGAGCACGAGTTCATGTTCTATTGTAACCCTAATGCAGATATGCTGCTCAAGCCCGAAGAGCTCAATTTCGAGCTGATCAGATCCGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATAGTAGAACCATCCAGGTCGGCACATCTAAAGGCAATGGAGGTCTCTAAAGATGCCGGTGCCCTGCTTTCCTACGACCCGAATCTTCGGCTAACACTGTGGCCCTCACCGAAGGAGGCACGCGAGCAGATAATGAGTATATGGGAAAAGGCAGAAGTGATCAAGGTCAGTGATGTGGAGCTTGAATTCCTCACAGGAAATCCCATCATTGATGATGAATCTACAATGACTCTGTGGCACTCTAACTTGAAGCTCCTCCTTGTCACTCTTGGCAAAAAGGGTTACAGATACTACACGAAGAATTTCTATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTTGCAAAGATTGTTGATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGCAGTACTCAAATTCGCTAATGCATGTGGAGCAATAACAACTACTAAGAAGGGAGCAATTCATGCACTGCCCACTGAGTCTGAAGTCCTCGCCCTAATCAAAGGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

303

Amino Acids

32.89

Weight (kDa)

5.5

Isoelectric Point (pI)

24.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	7 - 291	2.5e-49	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	185, 458
AccII	CGCG	2 cut(s)	273, 522
AciI	CCGC	2 cut(s)	156, 366
AclWI	GGATC	2 cut(s)	357, 394
AcsI	RAATTY	3 cut(s)	584, 700, 809
AcuI	CTGAAG	2 cut(s)	105, 900
AfaI	GTAC	1 cut(s)	804
AgsI	TTSAA	3 cut(s)	103, 584, 649
AjnI	CCWGG	2 cut(s)	216, 413
AluBI	AGCT	7 cut(s)	89, 181, 343, 355, 396, 580, 652
AluI	AGCT	7 cut(s)	89, 181, 343, 355, 396, 580, 652
Alw21I	GWGCWC	3 cut(s)	288, 345, 742
Alw26I	GTCTC	2 cut(s)	214, 448
AlwI	GGATC	2 cut(s)	357, 394
AoxI	GGCC	3 cut(s)	115, 255, 500
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	3 cut(s)	584, 700, 809
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	242, 275
AspS9I	GGNCC	2 cut(s)	116, 501
AsuHPI	GGTGA	2 cut(s)	498, 734
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	2 cut(s)	185, 458
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	287
Bbv12I	GWGCWC	3 cut(s)	288, 345, 742
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	272, 418, 611
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	218, 415
BclI	TGATCA	2 cut(s)	357, 558
BcoDI	GTCTC	2 cut(s)	214, 448
BisI	GCNGC	2 cut(s)	157, 326
BlsI	GCNGC	2 cut(s)	158, 327
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	218, 415
BmgT120I	GGNCC	2 cut(s)	116, 501
BmiI	GGNNCC	3 cut(s)	118, 187, 460
BmrFI	CCNGG	2 cut(s)	218, 415
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	30, 231, 442
BmuI	ACTGGG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	217, 235
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	3 cut(s)	84, 111, 718
Bse3DI	GCAATG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	218, 415
BseDI	CCNNGG	2 cut(s)	217, 235
BseGI	GGATG	1 cut(s)	410
BseJI	GATNNNNATC	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	3 cut(s)	84, 111, 718
BseRI	GAGGAG	2 cut(s)	154, 644
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	273, 522
BshFI	GGCC	3 cut(s)	117, 257, 502
BshNI	GGYRCC	2 cut(s)	185, 458
BsiHKAI	GWGCWC	3 cut(s)	288, 345, 742
BsiSI	CCGG	2 cut(s)	92, 456
BsmAI	GTCTC	2 cut(s)	214, 448
BsnI	GGCC	3 cut(s)	117, 257, 502
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	4 cut(s)	288, 345, 463, 742
Bsp143I	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
BspACI	CCGC	2 cut(s)	156, 366
BspANI	GGCC	3 cut(s)	117, 257, 502
BspCNI	CTCAG	1 cut(s)	865
BspFNI	CGCG	2 cut(s)	273, 522
BspLI	GGNNCC	3 cut(s)	118, 187, 460
BspPI	GGATC	2 cut(s)	357, 394
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	2 cut(s)	185, 458
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	84, 111, 718
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	217, 235
BssMI	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	218, 415
Bst4CI	ACNGT	2 cut(s)	64, 498
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	4 cut(s)	244, 520, 524, 747
BstDEI	CTNAG	2 cut(s)	843, 873
BstF5I	GGATG	1 cut(s)	410
BstFNI	CGCG	2 cut(s)	273, 522
BstHHI	GCGC	2 cut(s)	242, 275
BstKTI	GATC	7 cut(s)	24, 48, 196, 360, 365, 389, 561
BstMAI	GTCTC	2 cut(s)	214, 448
BstMBI	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 340, 746, 827, 860
BstNI	CCWGG	2 cut(s)	218, 415
BstNSI	RCATGY	1 cut(s)	825
BstSCI	CCNGG	2 cut(s)	216, 413
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	2 cut(s)	273, 522
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	117, 257, 502
BtsCI	GGATG	1 cut(s)	410
BtsI	GCAGTG	2 cut(s)	147, 863
BtsIMutI	CAGTG	7 cut(s)	77, 118, 147, 494, 574, 863, 870
Cac8I	GCNNGC	4 cut(s)	244, 520, 524, 747
CfoI	GCGC	2 cut(s)	242, 275
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	116, 501
Csp6I	GTAC	1 cut(s)	803
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	3 cut(s)	295, 822, 860
CviQI	GTAC	1 cut(s)	803
DdeI	CTNAG	2 cut(s)	843, 873
DpnI	GATC	7 cut(s)	23, 47, 195, 359, 364, 388, 560
DpnII	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	105, 900
EcoICRI	GAGCTC	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	216, 413
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	3 cut(s)	298, 825, 863
FaiI	YATR	9 cut(s)	296, 323, 384, 539, 541, 708, 823, 861, 907
FatI	CATG	3 cut(s)	294, 821, 859
FbaI	TGATCA	2 cut(s)	357, 558
Fnu4HI	GCNGC	2 cut(s)	157, 326
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	157, 326
GlaI	GCGC	2 cut(s)	241, 274
GluI	GCNGC	2 cut(s)	157, 326
HaeIII	GGCC	3 cut(s)	117, 257, 502
HapII	CCGG	2 cut(s)	92, 456
HhaI	GCGC	2 cut(s)	242, 275
Hin1II	CATG	3 cut(s)	298, 825, 863
Hin6I	GCGC	2 cut(s)	240, 273
HinP1I	GCGC	2 cut(s)	240, 273
HindIII	AAGCTT	2 cut(s)	179, 394
HinfI	GANTC	5 cut(s)	481, 617, 628, 725, 875
HpaII	CCGG	2 cut(s)	92, 456
HphI	GGTGA	2 cut(s)	498, 734
Hpy188I	TCNGA	3 cut(s)	21, 362, 880
Hpy188III	TCNNGA	6 cut(s)	25, 100, 175, 197, 262, 776
HpyAV	CCTTC	4 cut(s)	7, 268, 505, 841
HpyCH4III	ACNGT	2 cut(s)	64, 498
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	317, 749, 821, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 340, 746, 827, 860
HpyF3I	CTNAG	2 cut(s)	843, 873
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	298, 825, 863
HspAI	GCGC	2 cut(s)	240, 273
Ksp22I	TGATCA	2 cut(s)	357, 558
Kzo9I	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	5 cut(s)	94, 577, 657, 827, 851
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	3 cut(s)	30, 231, 442
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	262, 305, 661, 680
MalI	GATC	7 cut(s)	23, 47, 195, 359, 364, 388, 560
MboI	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
MboII	GAAGA	3 cut(s)	350, 476, 709
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	4 cut(s)	288, 345, 463, 742
MluCI	AATT	5 cut(s)	346, 584, 700, 809, 855
MlyI	GAGTC	2 cut(s)	622, 884
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	175, 433, 508, 514, 599, 665, 789, 896
Mph1103I	ATGCAT	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	701
MspI	CCGG	2 cut(s)	92, 456
MspR9I	CCNGG	2 cut(s)	218, 415
MvaI	CCWGG	2 cut(s)	218, 415
MvnI	CGCG	2 cut(s)	273, 522
MwoI	GCNNNNNNNGC	5 cut(s)	331, 340, 746, 827, 860
NdeII	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
NlaIII	CATG	3 cut(s)	298, 825, 863
NlaIV	GGNNCC	3 cut(s)	118, 187, 460
NmeAIII	GCCGAG	2 cut(s)	127, 132
NmuCI	GTSAC	2 cut(s)	262, 661
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	1 cut(s)	825
PciSI	GCTCTTC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	3 cut(s)	481, 617, 725
PkrI	GCNGC	2 cut(s)	158, 327
PleI	GAGTC	2 cut(s)	622, 883
PpsI	GAGTC	2 cut(s)	622, 883
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	216, 413
PspGI	CCWGG	2 cut(s)	216, 413
PspN4I	GGNNCC	3 cut(s)	118, 187, 460
PspPI	GGNCC	2 cut(s)	116, 501
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	804
RsaNI	GTAC	1 cut(s)	803
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	333
SatI	GCNGC	2 cut(s)	157, 326
Sau3AI	GATC	7 cut(s)	21, 45, 193, 357, 362, 386, 558
Sau96I	GGNCC	2 cut(s)	116, 501
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	2 cut(s)	622, 884
ScrFI	CCNGG	2 cut(s)	218, 415
SduI	GDGCHC	4 cut(s)	288, 345, 463, 742
SfaNI	GCATC	3 cut(s)	30, 231, 442
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	346, 584, 700, 809, 855
SsiI	CCGC	2 cut(s)	156, 366
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	216, 413
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	64, 498
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	48, 196, 231, 351
TasI	AATT	5 cut(s)	346, 584, 700, 809, 855
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	481, 617, 725
TscAI	CASTG	7 cut(s)	84, 118, 147, 501, 574, 870, 877
TseFI	GTSAC	2 cut(s)	262, 661
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	2 cut(s)	262, 661
TspDTI	ATGAA	4 cut(s)	283, 630, 717, 848
TspRI	CASTG	7 cut(s)	84, 118, 147, 501, 574, 870, 877
XapI	RAATTY	3 cut(s)	584, 700, 809
XceI	RCATGY	1 cut(s)	825
XmnI	GAANNNNTTC	1 cut(s)	701
ZrmI	AGTACT	1 cut(s)	804
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.