Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

55572046 .. 55573095

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCCTTCAATCCAATCCTGTATATCTTACAACTATCATTATTTCTTTCTCCTCCTATACCCACCAAACAACCTCCTCCTCTGTTTACTATCTTTGTCTCTGGGAGATGCTGATCGACTTCGTGCCCAACGTTTCGAGGGTTTCACTGGCCGAAGCCCAGCTTTCTTGAAGGCCCCCTGTGGCTCCCCCGCCAACGTGGCAATCGCTGTGGCTCGGTACGGCGGCAACTCGTCTTTCGTCGGGAAGCTTGGTGACGACGAGTTCGGGCACATGCTCGCTGGAATCTTGAAAGAGAACGGTGTCTCCGGGCAGGGCATCCTGTTCGACCAAAACGCATGCACCGCTCTGGCCTTTGTCACCCTGCGCGCTGATGGAGAACGCGAGTTCATGTTTTACCGGAACCCTAGCGCCGATATGCTGCTCAAGCCCGAAGAGCTCAATTTGGAGCTGATCAGATCCGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATCGTTGAGCCATGCAAGTCGGCACATCTGAAGGCAATGGAGGTCGCAAAAGATGCTGGTGCATTACTTTCCTACGATCCGAACCTCCGACTACCATTGTGGCCTTCACCTGAGAAGGCACGAGAACAAATAATGAATATATGGGAAAAGGCAGAACTGCAGAAATACTACACTAAGAATTTCCGTGGATGTGTGGAAGCTTTTCGTGTAACTGCGGTAGATATTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGGCGCTCGCAAAGATTGTTGATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTCGCAAATGCATGTGGAGCAATAACAACTACTAAGAAGGGAGCAATTCCTGCACTCCCCACAGAGTCCGAAGTCCTCGCCCTAATCAAAGAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

305

Amino Acids

33.42

Weight (kDa)

5.9

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	46 - 217	3.9e-31	pfkB family carbohydrate kinase
PfkB	PF00294	220 - 294	3.9e-13	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	344
AccII	CGCG	2 cut(s)	366, 381
AciI	CCGC	5 cut(s)	189, 222, 342, 459, 707
AclI	AACGTT	1 cut(s)	130
AclWI	GGATC	3 cut(s)	450, 487, 563
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	670, 818
AcuI	CTGAAG	1 cut(s)	542
AfaI	GTAC	2 cut(s)	218, 813
AgsI	TTSAA	3 cut(s)	9, 169, 289
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	6 cut(s)	161, 247, 436, 448, 489, 692
AluI	AGCT	6 cut(s)	161, 247, 436, 448, 489, 692
Alw21I	GWGCWC	2 cut(s)	438, 748
Alw26I	GTCTC	2 cut(s)	102, 307
AlwI	GGATC	3 cut(s)	450, 487, 563
AoxI	GGCC	4 cut(s)	148, 171, 348, 593
ApeKI	GCWGC	1 cut(s)	418
ApoI	RAATTY	2 cut(s)	670, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	4 cut(s)	366, 368, 410, 754
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	4 cut(s)	263, 349, 591, 740
BaeGI	GKGCMC	2 cut(s)	127, 270
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	612
Bbv12I	GWGCWC	2 cut(s)	438, 748
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	102, 307
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	650
BfoI	RGCGCY	2 cut(s)	411, 755
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	2 cut(s)	223, 419
BlsI	GCNGC	2 cut(s)	224, 420
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	3 cut(s)	174, 184, 401
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	3 cut(s)	97, 324, 535
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	676
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse1I	ACTGG	2 cut(s)	151, 724
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	2 cut(s)	315, 686
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	151, 724
BsePI	GCGCGC	1 cut(s)	364
BseRI	GAGGAG	3 cut(s)	41, 65, 68
BseSI	GKGCMC	2 cut(s)	127, 270
BseXI	GCAGC	1 cut(s)	405
BseYI	CCCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	2 cut(s)	366, 381
BshFI	GGCC	4 cut(s)	150, 173, 350, 595
BsiHKAI	GWGCWC	2 cut(s)	438, 748
BsiSI	CCGG	2 cut(s)	306, 397
BsmAI	GTCTC	2 cut(s)	102, 307
BsnI	GGCC	4 cut(s)	150, 173, 350, 595
Bsp1286I	GDGCHC	4 cut(s)	127, 270, 438, 748
Bsp143I	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
BspACI	CCGC	5 cut(s)	189, 222, 342, 459, 707
BspANI	GGCC	4 cut(s)	150, 173, 350, 595
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	2 cut(s)	366, 381
BspLI	GGNNCC	3 cut(s)	174, 184, 401
BspMAI	CTGCAG	1 cut(s)	654
BspPI	GGATC	3 cut(s)	450, 487, 563
BspQI	GCTCTTC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	151, 724
BssECI	CCNNGG	1 cut(s)	676
BssHII	GCGCGC	1 cut(s)	364
BssMI	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	426
BstAPI	GCANNNNNTGC	2 cut(s)	545, 869
BstC8I	GCNNGC	4 cut(s)	276, 337, 366, 756
BstDEI	CTNAG	3 cut(s)	603, 666, 852
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	2 cut(s)	315, 686
BstFNI	CGCG	2 cut(s)	366, 381
BstH2I	RGCGCY	2 cut(s)	411, 755
BstHHI	GCGC	4 cut(s)	366, 368, 410, 754
BstKTI	GATC	6 cut(s)	115, 453, 458, 482, 495, 571
BstMAI	GTCTC	2 cut(s)	102, 307
BstMBI	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 341, 424, 433, 545, 836, 869
BstNSI	RCATGY	3 cut(s)	274, 339, 834
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	650
BstSLI	GKGCMC	2 cut(s)	127, 270
BstUI	CGCG	2 cut(s)	366, 381
BstV1I	GCAGC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	4 cut(s)	150, 173, 350, 595
BtgI	CCRYGG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	315, 686
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	4 cut(s)	276, 337, 366, 756
CfoI	GCGC	4 cut(s)	366, 368, 410, 754
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	217, 812
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	5 cut(s)	271, 336, 388, 504, 831
CviQI	GTAC	2 cut(s)	217, 812
DdeI	CTNAG	3 cut(s)	603, 666, 852
DpnI	GATC	6 cut(s)	114, 452, 457, 481, 494, 570
DpnII	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	5 cut(s)	274, 339, 391, 507, 834
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	5 cut(s)	270, 335, 387, 503, 830
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	223, 419
FokI	GGATG	2 cut(s)	302, 693
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	223, 419
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	4 cut(s)	365, 367, 409, 753
GluI	GCNGC	2 cut(s)	223, 419
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	411, 755
HaeIII	GGCC	4 cut(s)	150, 173, 350, 595
HapII	CCGG	2 cut(s)	306, 397
HhaI	GCGC	4 cut(s)	366, 368, 410, 754
Hin1II	CATG	5 cut(s)	274, 339, 391, 507, 834
Hin6I	GCGC	4 cut(s)	364, 366, 408, 752
HinP1I	GCGC	4 cut(s)	364, 366, 408, 752
HindIII	AAGCTT	3 cut(s)	245, 487, 690
HinfI	GANTC	3 cut(s)	282, 731, 884
HpaII	CCGG	2 cut(s)	306, 397
HphI	GGTGA	4 cut(s)	263, 349, 591, 740
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	5 cut(s)	455, 522, 573, 581, 889
Hpy188III	TCNNGA	4 cut(s)	166, 241, 286, 785
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	2 cut(s)	242, 260
HpyAV	CCTTC	6 cut(s)	15, 163, 517, 601, 606, 850
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	2 cut(s)	130, 195
HpyCH4V	TGCA	6 cut(s)	339, 507, 554, 652, 830, 872
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 341, 424, 433, 545, 836, 869
HpyF3I	CTNAG	3 cut(s)	603, 666, 852
HpySE526I	ACGT	2 cut(s)	130, 195
Hsp92II	CATG	5 cut(s)	274, 339, 391, 507, 834
HspAI	GCGC	4 cut(s)	364, 366, 408, 752
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	4 cut(s)	188, 445, 836, 860
Lsp1109I	GCAGC	1 cut(s)	405
LweI	GCATC	3 cut(s)	97, 324, 535
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	130, 195
MaeIII	GTNAC	3 cut(s)	251, 355, 700
MalI	GATC	6 cut(s)	114, 452, 457, 481, 494, 570
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
MboII	GAAGA	1 cut(s)	443
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	4 cut(s)	127, 270, 438, 748
MluCI	AATT	4 cut(s)	439, 670, 818, 864
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	1 cut(s)	604
Mph1103I	ATGCAT	1 cut(s)	832
MroXI	GAANNNNTTC	1 cut(s)	693
MspI	CCGG	2 cut(s)	306, 397
MspR9I	CCNGG	1 cut(s)	307
MvnI	CGCG	2 cut(s)	366, 381
MwoI	GCNNNNNNNGC	7 cut(s)	197, 341, 424, 433, 545, 836, 869
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
NlaIII	CATG	5 cut(s)	274, 339, 391, 507, 834
NlaIV	GGNNCC	3 cut(s)	174, 184, 401
NmuCI	GTSAC	2 cut(s)	251, 355
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	3 cut(s)	274, 339, 834
PaeI	GCATGC	1 cut(s)	339
PauI	GCGCGC	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	282, 731
PkrI	GCNGC	2 cut(s)	224, 420
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Psp124BI	GAGCTC	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	174, 184, 401
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	455
PteI	GCGCGC	1 cut(s)	364
RsaI	GTAC	2 cut(s)	218, 813
RsaNI	GTAC	2 cut(s)	217, 812
SacI	GAGCTC	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	2 cut(s)	223, 419
Sau3AI	GATC	6 cut(s)	112, 450, 455, 479, 492, 568
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	4 cut(s)	127, 270, 438, 748
SfaNI	GCATC	3 cut(s)	97, 324, 535
SfcI	CTRYAG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	4 cut(s)	439, 670, 818, 864
SsiI	CCGC	5 cut(s)	189, 222, 342, 459, 707
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	2 cut(s)	133, 198
TaqI	TCGA	3 cut(s)	115, 135, 324
TasI	AATT	4 cut(s)	439, 670, 818, 864
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	282, 731
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	251, 355
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	2 cut(s)	251, 355
TspDTI	ATGAA	3 cut(s)	376, 641, 723
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	670, 818
XceI	RCATGY	3 cut(s)	274, 339, 834
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	813
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.