Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

19030671 .. 19036260

Gene Structure 5590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0214800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGTGGCCACCGCAGCTTCCAGCTTCGCGCTTCACACGCGCATCTCAGCCGCTCCCCGAGCCCTAAACCCTAACCGCGTCCAAACGATGTCGTCTTGCTCCCCTCTCCGAGCCTCCCTCTCCTCCAACTTCCTCTCGCCCTTCGCCGGCGGCAGCGTCACCTCCGACTTCTCCGGCCACAAGCTCCGCCCTTCCTCTCTCAATCCGGCGCCGTCTCGTGGCTCTAAGCCCAAACGCGGTGTCGTCACCATGGTTATTCCATTTCAAAGGGGAAGTGCATGGGAGCAACCACCTCCAGACCTGGCATCATATCTATACAAGAATCGGATTGTTTACTTGGGAATGTCGCTTGTTCCTTCAGTAACCGAGTTGATTCTTGCAGAATTTCTCTACCTTCAGTATGAGGACGATACAAAGCCTATCTACTTGTACATAAATTCCACTGGAACTACCAAGGGTGGTGAGAAATTGGGTTACGAGACAGAGGCTCTTGCAATATATGATGTCATGAGGTATGTCAAGCCACCAATATTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCCGCTTTACTCTTGGCTGCTGGTGCAAAAGGAAACCGTTCTGCGTTACCCTCATCAACAATCATGATAAAGCAGCCAATTGCAAGGTTCCAAGGTCAAGCAACAGATATTGAACTTGCAAGAAAAGAAGTGAAGAATGTGAAAGACGAGTTGGTCAAGCTCTTTGCTAAGCATGTTGGAAAATCGACTGAGCAAATTGAAGCGGACATTAGACGTCCAAAATATTTTAGTCCCAGCGAGGCAGTTGAATATGGCATCATAGACAAGGTACTGTACAATGAGAGGGGTCATAAAGACAGGGGAGTAGTTGCTGACCTGAAAAAGGCACAGCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

301

Amino Acids

32.99

Weight (kDa)

9.45

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	101 - 281	2.7e-52	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AatII	GACGTC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	4 cut(s)	32, 43, 81, 240
AciI	CCGC	8 cut(s)	15, 54, 79, 153, 190, 240, 570, 770
AcoI	YGGCCR	2 cut(s)	9, 178
AcsI	RAATTY	2 cut(s)	386, 439
AcuI	CTGAAG	2 cut(s)	345, 383
AcyI	GRCGYC	2 cut(s)	212, 781
AfaI	GTAC	3 cut(s)	434, 837, 842
AfiI	CCNNNNNNNGG	4 cut(s)	149, 221, 239, 889
AgsI	TTSAA	4 cut(s)	269, 680, 767, 815
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	5 cut(s)	20, 27, 187, 727, 898
AluI	AGCT	5 cut(s)	20, 27, 187, 727, 898
Alw26I	GTCTC	2 cut(s)	222, 476
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	2 cut(s)	9, 178
ApeKI	GCWGC	4 cut(s)	17, 156, 584, 640
ApoI	RAATTY	2 cut(s)	386, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	3 cut(s)	34, 45, 214
AsuHPI	GGTGA	3 cut(s)	154, 241, 476
AvaI	CYCGRG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	558, 590
BauI	CACGAG	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	29, 168, 571, 652
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	222, 476
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	7 cut(s)	18, 54, 154, 157, 570, 585, 641
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	7 cut(s)	19, 55, 155, 158, 571, 586, 642
Bme1390I	CCNGG	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	213, 656
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	3 cut(s)	54, 317, 831
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	735
BsaHI	GRCGYC	2 cut(s)	212, 781
BsaJI	CCNNGG	3 cut(s)	252, 456, 658
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 221, 239, 889
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	252, 456, 658
BseLI	CCNNNNNNNGG	4 cut(s)	149, 221, 239, 889
BseMII	CTCAG	2 cut(s)	63, 747
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	4 cut(s)	29, 168, 571, 652
BseYI	CCCAGC	1 cut(s)	800
Bsh1236I	CGCG	4 cut(s)	32, 43, 81, 240
BshFI	GGCC	2 cut(s)	11, 180
BshNI	GGYRCC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	150, 177, 209
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	4 cut(s)	149, 221, 239, 889
BsmAI	GTCTC	2 cut(s)	222, 476
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	783
BsnI	GGCC	2 cut(s)	11, 180
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp1407I	TGTACA	2 cut(s)	432, 840
Bsp1720I	GCTNAGC	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	8 cut(s)	15, 54, 79, 153, 190, 240, 570, 770
BspANI	GGCC	2 cut(s)	11, 180
BspCNI	CTCAG	2 cut(s)	62, 748
BspFNI	CGCG	4 cut(s)	32, 43, 81, 240
BspHI	TCATGA	2 cut(s)	510, 630
BspLI	GGNNCC	2 cut(s)	213, 656
BspT107I	GGYRCC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	149
BsrGI	TGTACA	2 cut(s)	432, 840
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	252, 456, 658
BssNI	GRCGYC	2 cut(s)	212, 781
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	3 cut(s)	252, 456, 658
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	605, 840
BstACI	GRCGYC	2 cut(s)	212, 781
BstAUI	TGTACA	2 cut(s)	432, 840
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	49, 228, 735, 756
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	887
BstFNI	CGCG	4 cut(s)	32, 43, 81, 240
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	3 cut(s)	34, 45, 214
BstMAI	GTCTC	2 cut(s)	222, 476
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 40, 62, 590
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	303
BstUI	CGCG	4 cut(s)	32, 43, 81, 240
BstV1I	GCAGC	4 cut(s)	29, 168, 571, 652
BsuRI	GGCC	2 cut(s)	11, 180
BtgI	CCRYGG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	2 cut(s)	510, 630
CfoI	GCGC	3 cut(s)	34, 45, 214
Cfr10I	RCCGGY	1 cut(s)	149
CseI	GACGC	2 cut(s)	70, 148
Csp6I	GTAC	3 cut(s)	433, 836, 841
CviAII	CATG	5 cut(s)	253, 282, 511, 631, 740
CviQI	GTAC	3 cut(s)	433, 836, 841
DdeI	CTNAG	4 cut(s)	49, 228, 735, 756
DinI	GGCGCC	1 cut(s)	213
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	2 cut(s)	9, 178
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	3 cut(s)	252, 456, 658
Eco24I	GRGCYC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	345, 383
Eco88I	CYCGRG	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	3 cut(s)	252, 456, 658
EcoT38I	GRGCYC	1 cut(s)	67
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
ErhI	CCWWGG	3 cut(s)	252, 456, 658
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	5 cut(s)	256, 285, 514, 634, 743
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	5 cut(s)	252, 281, 510, 630, 739
Fnu4HI	GCNGC	7 cut(s)	18, 54, 154, 157, 570, 585, 641
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	7 cut(s)	18, 54, 154, 157, 570, 585, 641
GlaI	GCGC	3 cut(s)	33, 44, 213
GluI	GCNGC	7 cut(s)	18, 54, 154, 157, 570, 585, 641
GsaI	CCCAGC	1 cut(s)	804
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	11, 180
HapII	CCGG	3 cut(s)	150, 177, 209
HgaI	GACGC	2 cut(s)	70, 148
HhaI	GCGC	3 cut(s)	34, 45, 214
Hin1I	GRCGYC	2 cut(s)	212, 781
Hin1II	CATG	5 cut(s)	256, 285, 514, 634, 743
Hin6I	GCGC	3 cut(s)	32, 43, 212
HinP1I	GCGC	3 cut(s)	32, 43, 212
HinfI	GANTC	2 cut(s)	325, 376
HpaII	CCGG	3 cut(s)	150, 177, 209
HphI	GGTGA	3 cut(s)	154, 241, 476
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	113, 169, 330
Hpy188III	TCNNGA	3 cut(s)	299, 511, 631
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	4 cut(s)	154, 204, 369, 407
HpyCH4III	ACNGT	2 cut(s)	605, 840
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	6 cut(s)	281, 383, 497, 593, 650, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 40, 62, 590
HpyF3I	CTNAG	4 cut(s)	49, 228, 735, 756
HpySE526I	ACGT	1 cut(s)	781
Hsp92I	GRCGYC	2 cut(s)	212, 781
Hsp92II	CATG	5 cut(s)	256, 285, 514, 634, 743
HspAI	GCGC	3 cut(s)	32, 43, 212
KasI	GGCGCC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
LmnI	GCTCC	4 cut(s)	61, 107, 192, 286
Lsp1109I	GCAGC	4 cut(s)	29, 168, 571, 652
LweI	GCATC	3 cut(s)	54, 317, 831
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	5 cut(s)	160, 247, 364, 476, 612
MbiI	CCGCTC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	712
MfeI	CAATTG	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	5 cut(s)	386, 439, 470, 645, 762
MluNI	TGGCCA	1 cut(s)	11
Mly113I	GGCGCC	1 cut(s)	212
MmeI	TCCRAC	3 cut(s)	153, 192, 724
Mox20I	TGGCCA	1 cut(s)	11
MreI	CGCCGGCG	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	3 cut(s)	150, 177, 209
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	4 cut(s)	32, 43, 81, 240
MwoI	GCNNNNNNNGC	4 cut(s)	17, 40, 62, 590
NaeI	GCCGGC	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	252
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	5 cut(s)	256, 285, 514, 634, 743
NlaIV	GGNNCC	2 cut(s)	213, 656
NmuCI	GTSAC	2 cut(s)	160, 247
NspI	RCATGY	1 cut(s)	743
PagI	TCATGA	2 cut(s)	510, 630
PdiI	GCCGGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	325, 376
PkrI	GCNGC	7 cut(s)	19, 55, 155, 158, 571, 586, 642
PluTI	GGCGCC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	213, 656
RsaI	GTAC	3 cut(s)	434, 837, 842
RsaNI	GTAC	3 cut(s)	433, 836, 841
SatI	GCNGC	7 cut(s)	18, 54, 154, 157, 570, 585, 641
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	54, 317, 831
SfoI	GGCGCC	1 cut(s)	213
SgrAI	CRCCGGYG	1 cut(s)	149
Sse9I	AATT	5 cut(s)	386, 439, 470, 645, 762
SsiI	CCGC	8 cut(s)	15, 54, 79, 153, 190, 240, 570, 770
SspDI	GGCGCC	1 cut(s)	211
SspI	AATATT	2 cut(s)	534, 791
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	3 cut(s)	252, 456, 658
TaaI	ACNGT	2 cut(s)	605, 840
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	1 cut(s)	752
TasI	AATT	5 cut(s)	386, 439, 470, 645, 762
TatI	WGTACW	2 cut(s)	432, 840
TauI	GCSGC	3 cut(s)	56, 156, 572
TfiI	GAWTC	2 cut(s)	325, 376
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	160, 247
TseI	GCWGC	4 cut(s)	17, 156, 584, 640
Tsp45I	GTSAC	2 cut(s)	160, 247
TspRI	CASTG	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	887
XapI	RAATTY	2 cut(s)	386, 439
XceI	RCATGY	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	604
ZraI	GACGTC	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.